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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052182 ID=TCONS_00052182|Name=TCONS_00052182|organism=Clytia hemisphaerica|type=transcript|length=2195bpRun BLAST on NCBI protein sequence of TCONS_00052182-protein >TCONS_00052182-protein ID=TCONS_00052182-protein|Name=TCONS_00052182-protein|organism=Clytia hemisphaerica|type=polypeptide|length=643bp MRKQCFCYVILPTFSIIGILGISWLVAAFIEIFTNNLTMIRILDRNLLGNRun BLAST on NCBI transcript from alignment at scaffold_212:84750..117268+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052182 ID=TCONS_00052182|Name=TCONS_00052182|organism=Clytia hemisphaerica|type=transcript|length=32519bp|location=Sequence derived from alignment at scaffold_212:84750..117268+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_212:84750..117268+ >TCONS_00052182 ID=TCONS_00052182|Name=TCONS_00052182|organism=Clytia hemisphaerica|type=CDS|length=25116bp|location=Sequence derived from alignment at scaffold_212:84750..117268+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052182 vs. Swiss-Prot (Human)
Match: TMM62 (Transmembrane protein 62 OS=Homo sapiens GN=TMEM62 PE=1 SV=1) HSP 1 Score: 275.018 bits (702), Expect = 2.111e-81 Identity = 180/501 (35.93%), Postives = 282/501 (56.29%), Query Frame = 3
Query: 276 GDTKDKLFWFVQVSDIHLSQYRNYNYQLSQFRMFCSNLLKRIGPELVIITGDLTDAKDQTMQGSEQYIKEWRTYNQLVKHCTKNIPKAKWLDVRGNHDSFNVPSLNKHWNLYEEYAASQQKFSSGLHHYIHQTKYGKYAFTGIDIAXXXXXXXXXXXXALPTEENMKAIEHYSSQSFKYNGTVWYGHYPLS-ITTKAHELRILLSSGIAYLCGHLHKFP-LLPHMHAIHNEGLRELELSDWKYTRKFRLAAFDHDSFSFVDVTYPIETIVLFTNPVDARYMVQGKTPLHQIKSSTHIRFLLFASQDIDSMKVRVFIDDEILCKETNRQGPLNTCSWNPSKYQYRIHKIQVVIENGKGIEEYSME-FSL-DGTRIPLGIRSVILILTDLCTMLRALFXXXXXXXXXXXXXXKTKATTNKSIGICQGFLQQYAPYVHNVINRDVIFWKIIWYNVYIALGPHCIGFFVPNSLGMQFAYGIWTNGTFLPGTLTFFYTSINILVFN 1766
GD+ +FW +Q+SDIHLS++R+ + FCS + I P LV+ TGDLTDAK + GS Q+ EW+TY ++K T+ + K KWLD++GNHD+FN+PSL+ N Y +Y+A ++ G HY+H T +G Y+F +D NPGP RP+NFF + ++ M+ + + +S + N T+W+GH+ S I + + +R ++SS IAYLCGHLH L+P +H H +G ELE+ DWK R++R+ AFDHD FSF D+ + +VL TNP Y PL ++ STHIR L F+ I S+ V+ ID L + + GP+ WNP Y H I+V++++ G + FS+ + + + ++ TD M R LFVL V+ + I I+ + + + GF+ + +H + ++ ++ ++ +Y LGP G + G F++GI+ NG FL G++TF + + FN
Sbjct: 51 GDSN--IFWGLQISDIHLSRFRDPGRAV-DLEKFCSETIDIIQPALVLATGDLTDAKTKEQLGSRQHEVEWQTYQGILKK-TRVMEKTKWLDIKGNHDAFNIPSLDSIKNYYRKYSAVRR---DGSFHYVHSTPFGNYSFICVDATVNPGPKRPYNFFGILDKKKMEELLLLAKESSRSNHTIWFGHFTTSTILSPSPGIRSIMSSAIAYLCGHLHTLGGLMPVLHTRHFQGTLELEVGDWKDNRRYRIFAFDHDLFSFADLIFGKWPVVLITNPKSLLYSCGEHEPLERLLHSTHIRVLAFSLSSITSVTVK--IDGVHLGQAVHVSGPIFVLKWNPRNYSSGTHNIEVIVQDSAGRSKSVHHIFSVQENNHLSFDPLASFILRTDHYIMARVLFVLIVLSQLTILIIFRYRGY--PELKEPSGFINLTSFSLHVLSKINIFYYSVLLLTLYTVLGPWFFGEIIDGKFGCCFSFGIFVNGHFLQGSITFIIGILQLAFFN 540 The following BLAST results are available for this feature:
BLAST of TCONS_00052182 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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