TCONS_00052173 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052173
Unique NameTCONS_00052173
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length570

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052173 ID=TCONS_00052173|Name=TCONS_00052173|organism=Clytia hemisphaerica|type=transcript|length=570bp
tcacgccaatacttttggaaaaaatcaaaacaagtaagCAAAGAGTCAGA
AGTAACCAAATAACGCAAACAATAACGAAAGCAAAATGTCAAGATGGAGG
TCAACAAATATTTGAATCTGTTTTCAACACTAGATTGCATAATCTAGAGA
AGAAAATGGAGGAACTTATGGCTATAAACAAAGCATACGTCGCTAAAGAA
CCAAGACGGGCAACATATGCAGATATCACGAAGGAAGAGGTGAAGAAACA
AGAGGTTATCAttaagaaatttatcaaaaatgaaaaagaagaaagagaag
aagatcGCTGGAAGAACTTAACTAGATGTAACATCATTGTCCATCATTTA
GGTGAAAATAAAGATGAGAACAAAGAGGAACAGCGGGCCGGTGACAAAGA
TTACGTGGAGGGAGTTGTAGGAAATCGTATGGAATCAGACCAAGTTACAG
TAACTGTTAGGTGCACccaacaatttttaaatttatggtctttctttctt
tgttttttttcccaGGCCAGGCtacataccgtgaagtcgggtaacttgcg
gaggctaacatgcatagccc
Run BLAST on NCBI

protein sequence of TCONS_00052173-protein

>TCONS_00052173-protein ID=TCONS_00052173-protein|Name=TCONS_00052173-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
TPILLEKIKTSKQRVRSNQITQTITKAKCQDGGQQIFESVFNTRLHNLEK
KMEELMAINKAYVAKEPRRATYADITKEEVKKQEVIIKKFIKNEKEEREE
DRWKNLTRCNIIVHHLGENKDENKEEQRAGDKDYVEGVVGNRMESDQVTV
TVRCTQQFLNLWSFFLCFFSQARLHTVKSGNLRRLTCIA
Run BLAST on NCBI

transcript from alignment at scaffold_211:207549..208118

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052173 ID=TCONS_00052173|Name=TCONS_00052173|organism=Clytia hemisphaerica|type=transcript|length=570bp|location=Sequence derived from alignment at scaffold_211:207549..208118 (Clytia hemisphaerica)
gggctatgcatgttagcctccgcaagttacccgacttcacggtatgtaGC
CTGGCCtgggaaaaaaaacaaagaaagaaagaccataaatttaaaaattg
ttggGTGCACCTAACAGTTACTGTAACTTGGTCTGATTCCATACGATTTC
CTACAACTCCCTCCACGTAATCTTTGTCACCGGCCCGCTGTTCCTCTTTG
TTCTCATCTTTATTTTCACCTAAATGATGGACAATGATGTTACATCTAGT
TAAGTTCTTCCAGCgatcttcttctctttcttctttttcatttttgataa
atttcttaaTGATAACCTCTTGTTTCTTCACCTCTTCCTTCGTGATATCT
GCATATGTTGCCCGTCTTGGTTCTTTAGCGACGTATGCTTTGTTTATAGC
CATAAGTTCCTCCATTTTCTTCTCTAGATTATGCAATCTAGTGTTGAAAA
CAGATTCAAATATTTGTTGACCTCCATCTTGACATTTTGCTTTCGTTATT
GTTTGCGTTATTTGGTTACTTCTGACTCTTTGcttacttgttttgatttt
ttccaaaagtattggcgtga

Coding sequence (CDS) from alignment at scaffold_211:207549..208118

>TCONS_00052173 ID=TCONS_00052173|Name=TCONS_00052173|organism=Clytia hemisphaerica|type=CDS|length=567bp|location=Sequence derived from alignment at scaffold_211:207549..208118 (Clytia hemisphaerica)
ggctatgcatgttagcctccgcaagttacccgacttcacggtatgtaGCC
TGGCCtgggaaaaaaaacaaagaaagaaagaccataaatttaaaaattgt
tggGTGCACCTAACAGTTACTGTAACTTGGTCTGATTCCATACGATTTCC
TACAACTCCCTCCACGTAATCTTTGTCACCGGCCCGCTGTTCCTCTTTGT
TCTCATCTTTATTTTCACCTAAATGATGGACAATGATGTTACATCTAGTT
AAGTTCTTCCAGCgatcttcttctctttcttctttttcatttttgataaa
tttcttaaTGATAACCTCTTGTTTCTTCACCTCTTCCTTCGTGATATCTG
CATATGTTGCCCGTCTTGGTTCTTTAGCGACGTATGCTTTGTTTATAGCC
ATAAGTTCCTCCATTTTCTTCTCTAGATTATGCAATCTAGTGTTGAAAAC
AGATTCAAATATTTGTTGACCTCCATCTTGACATTTTGCTTTCGTTATTG
TTTGCGTTATTTGGTTACTTCTGACTCTTTGcttacttgttttgattttt
tccaaaagtattggcgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033038XLOC_033038Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052173-proteinTCONS_00052173-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052173-exon-scaffold_211-1491911889:207549..208118TCONS_00052173-exon-scaffold_211-1491911889:207549..208118Clytia hemisphaericaexon
TCONS_00052173-exon-scaffold_211-1510915933:207549..208118TCONS_00052173-exon-scaffold_211-1510915933:207549..208118Clytia hemisphaericaexon
TCONS_00052173-exon-scaffold_211-1575043694:207549..208118TCONS_00052173-exon-scaffold_211-1575043694:207549..208118Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_211supercontigscaffold_211:207549..208118 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.860469	0.643186	2.73217	1.88742	2.85029	1.11774	2.00556	2.24965	1.47494	1.30557	2.0434	1.96039	1.73412	2.1601	0.409733	0.544717	0.698422	0.783177	2.21217	1.57276	1.29808	1.31183	0.217213	0.867395	1.35471	2.15171	0.675672	0.568965	0.764517	0.339682
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052173 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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