TCONS_00052170 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052170
Unique NameTCONS_00052170
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length625

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052170 ID=TCONS_00052170|Name=TCONS_00052170|organism=Clytia hemisphaerica|type=transcript|length=625bp
GGGCTGCCATCTTGACTGCACCGTCGGGTAAGTCAGCCATTGATAAATCA
CGCTTTTTCATTCCCAGCCCACTTCCTTCACCCAAAGAACGTTTCTTTTT
CAAAGGTGGTATAAAGCCGCTGGCTTCCACGGAACGTCGTTTTCGTAGAT
TCAAACCACTTCCCTCTTCCATGGAGCGCCGTTTAAGCAAATTTACTCCA
CTTCCCTCTTCGATGGAGCGCCGTTTGCGTAAATTCAAAACACTTCCCTC
TTCCATGGAGCGCCGTTTGCGCAAATTTAATCCACTACCTTCATCGATGG
AGCGCCGCCTCAAATTCATTCCACTGCTTTCTCCAACAGATCTTTGCTTT
CTAGCGAAAGATCCGCTTCCCTCTTCTAAAGAACGTCTTCTACGAACAGG
AGTTGCGCCACTGCCTTCAGAAATAGAGCGTTTCTTCTTAGTTTCTGTAG
CAAGGTCTTTGTCAGCAGCTCGTTTACCAGGCATAGATTTGATGTGTTTG
TAAGGAACAAAATCGAGGAtgtctctcttcttttgtttttccttgGCGGC
TTTTTGTCCATATTTCTGAACAAATTCTCCTTCGTCACCATCTCCGATGG
TCATTCGACGGTATTCGAAACGAGA
Run BLAST on NCBI

protein sequence of TCONS_00052170-protein

>TCONS_00052170-protein ID=TCONS_00052170-protein|Name=TCONS_00052170-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
SRFEYRRMTIGDGDEGEFVQKYGQKAAKEKQKKRDILDFVPYKHIKSMPG
KRAADKDLATETKKKRSISEGSGATPVRRRRSLEEGSGSFARKQRSVGES
SGMNLRRRSIDEGSGLNLRKRRSMEEGSVLNLRKRRSIEEGSGVNLLKRR
SMEEGSGLNLRKRRSVEASGFIPPLKKKRSLGEGSGLGMKKRDLSMADLP
DGAVKMAA
Run BLAST on NCBI

transcript from alignment at scaffold_211:41945..42569

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052170 ID=TCONS_00052170|Name=TCONS_00052170|organism=Clytia hemisphaerica|type=transcript|length=625bp|location=Sequence derived from alignment at scaffold_211:41945..42569 (Clytia hemisphaerica)
TCTCGTTTCGAATACCGTCGAATGACCATCGGAGATGGTGACGAAGGAGA
ATTTGTTCAGAAATATGGACAAAAAGCCGCcaaggaaaaacaaaagaaga
gagacaTCCTCGATTTTGTTCCTTACAAACACATCAAATCTATGCCTGGT
AAACGAGCTGCTGACAAAGACCTTGCTACAGAAACTAAGAAGAAACGCTC
TATTTCTGAAGGCAGTGGCGCAACTCCTGTTCGTAGAAGACGTTCTTTAG
AAGAGGGAAGCGGATCTTTCGCTAGAAAGCAAAGATCTGTTGGAGAAAGC
AGTGGAATGAATTTGAGGCGGCGCTCCATCGATGAAGGTAGTGGATTAAA
TTTGCGCAAACGGCGCTCCATGGAAGAGGGAAGTGTTTTGAATTTACGCA
AACGGCGCTCCATCGAAGAGGGAAGTGGAGTAAATTTGCTTAAACGGCGC
TCCATGGAAGAGGGAAGTGGTTTGAATCTACGAAAACGACGTTCCGTGGA
AGCCAGCGGCTTTATACCACCTTTGAAAAAGAAACGTTCTTTGGGTGAAG
GAAGTGGGCTGGGAATGAAAAAGCGTGATTTATCAATGGCTGACTTACCC
GACGGTGCAGTCAAGATGGCAGCCC

Coding sequence (CDS) from alignment at scaffold_211:41945..42569

>TCONS_00052170 ID=TCONS_00052170|Name=TCONS_00052170|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at scaffold_211:41945..42569 (Clytia hemisphaerica)
TCTCGTTTCGAATACCGTCGAATGACCATCGGAGATGGTGACGAAGGAGA
ATTTGTTCAGAAATATGGACAAAAAGCCGCcaaggaaaaacaaaagaaga
gagacaTCCTCGATTTTGTTCCTTACAAACACATCAAATCTATGCCTGGT
AAACGAGCTGCTGACAAAGACCTTGCTACAGAAACTAAGAAGAAACGCTC
TATTTCTGAAGGCAGTGGCGCAACTCCTGTTCGTAGAAGACGTTCTTTAG
AAGAGGGAAGCGGATCTTTCGCTAGAAAGCAAAGATCTGTTGGAGAAAGC
AGTGGAATGAATTTGAGGCGGCGCTCCATCGATGAAGGTAGTGGATTAAA
TTTGCGCAAACGGCGCTCCATGGAAGAGGGAAGTGTTTTGAATTTACGCA
AACGGCGCTCCATCGAAGAGGGAAGTGGAGTAAATTTGCTTAAACGGCGC
TCCATGGAAGAGGGAAGTGGTTTGAATCTACGAAAACGACGTTCCGTGGA
AGCCAGCGGCTTTATACCACCTTTGAAAAAGAAACGTTCTTTGGGTGAAG
GAAGTGGGCTGGGAATGAAAAAGCGTGATTTATCAATGGCTGACTTACCC
GACGGTGCAGTCAAGATGGCAGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033035XLOC_033035Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052170-exon-scaffold_211-1491911889:41945..42569TCONS_00052170-exon-scaffold_211-1491911889:41945..42569Clytia hemisphaericaexon
TCONS_00052170-exon-scaffold_211-1510915933:41945..42569TCONS_00052170-exon-scaffold_211-1510915933:41945..42569Clytia hemisphaericaexon
TCONS_00052170-exon-scaffold_211-1575043694:41945..42569TCONS_00052170-exon-scaffold_211-1575043694:41945..42569Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052170-proteinTCONS_00052170-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_211supercontigscaffold_211:41945..42569 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.865791	0.969375	0	0.283725	0.91327	0.296626	16.1712	16.7862	7.82047	9.70995	11.611	5.18928	26.6273	28.734	12.1467	34.5093	23.9887	23.6259	0.578795	0.161772	9.08593	12.1879	8.304	8.44247	29.4589	39.6949	0.897073	0.785281	0.843441	0.440194
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052170 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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