TCONS_00052165 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052165
Unique NameTCONS_00052165
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length718

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052165 ID=TCONS_00052165|Name=TCONS_00052165|organism=Clytia hemisphaerica|type=transcript|length=718bp
AACCAAACCAGTTGTGGATAACAAGATGTCAATGATTGAAACAATGACCA
ATGAAATATTTGTACGTTGTGTCCATATCGTAATGTTCTGATGCCATGAA
GGCTGTATTGATGGCAATACATCCAATAATAATCCCCTCAAAGGCTGTAC
TTGATACAAATTTGAAGAAGAACGCGCGACAGCGAAGGCTAAAGGTAGGA
TTATCACCAAGCACTGGTGGCAGGGAATAATTAATCTCCTCTTTTTTCGC
TTTCGGTTTTTTCTTCTGTTCAACAGGAACAGTATACCGTTTGTTGCCAT
CAATCTCCTCTACGGGTGAGGGACCTTCTAAAAATTCCACATAATGTTCT
CCGTCGAATGAATACGTAGATGCGGTACGTTTGACTCTGTTCAGTTTCTC
AAGCTCGATTTCTGGGTCGGGATTGCCGTTGATCTCCATCTCGTACGAAG
CGCTGACGACGGCCAGCACAAGATTGAGTAGGTAAAATGGACCCAAGAAG
ACAGCCAATAAGAAATAGATCATGTACCATTCACCCATTGCTGATAtcac
ctgtaataaaacaaacaaatgaaGAATCATTACACGTTTTTNACAGCCAA
TAAGAAATAGATCATGTACCATTCACCCATTGCTGATAtcacctgtaata
aaacaaacaaatgaagaatcattacacgtttttttataagtacatccaaa
gtttttgaaacctttgaa
Run BLAST on NCBI

transcript from alignment at scaffold_211:71367..73467-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052165 ID=TCONS_00052165|Name=TCONS_00052165|organism=Clytia hemisphaerica|type=transcript|length=2101bp|location=Sequence derived from alignment at scaffold_211:71367..73467- (Clytia hemisphaerica)
AACCAAACCAGTTGTGGATAACAAGATGTCAATGATTGAAACAATGACCA
ATGTACCATCAAACATATTCCATTTATTCTTCAAATATCCTTTCAATGTG
TAACCCAATATTTTCATCACCATTTCAATTGCAAACATTGTCGTGAACAC
CTAATGTATTGAGAAAAAAAGGCAATGAAAGTTAGGTGCTTTGTAGTCAT
CCATTAACGGATTTGTGCTCCATATCAGGGCCTGCGCCACGATTTCGAAA
GTGAGGAGGCCAACAAAAATGTAGTGACTAAGGAGGCGCAACCGGTTTGC
GCCGACGGGCCGGAGAATTTTCGATTTTGACCTGTCTTATTTGGCTAAAA
CAGCTTCCTTTTTGTTCTGATTTTCTGAAAGAAAACTGTCAAGTTCGTTT
GTTTAAAACAAAAGAGTACAATTAGACTTATTTAAGTGTCCATCTGTCCC
CTTTTAGAAGGTTCTAAACCTTTTTATTGGCATGCGCACAGAAAAGAAAA
AAAATAATTAGGTGAAGGGAATTTTTTATTTTGCTTTGCAAAAAAGTGGG
GGGGGGGGCATGCCCCCCCCCCCCCCCCGGGGGGGGGGGGGGGGCATGCC
CCCCCCCCCCCCCCGGGGGGGGGGGGGGGGCATGCCCCCCCCCCCCCCCC
GGGGGGGGGGGGGGGGCATGCCCCCCCCGGCCCCCCGGTGGTGCGGGCCC
TGCATATATTATTCTACCTGCTGTTTTGTAGTGGTCTGCAATTCAGACTA
AGTGCTTTGCTATTTGCTGTCGAATTACAGTAAAGTCTCAATAAATCGAA
TGTTTTCTCGCCCCTTCAATTACCAATGCCTTCTAAACCTTATTCCAAAA
CTCGAAATTTCCTTAACTCAAACAAATTTACATTCTGTGTGCGGGTTCAA
GTTATATTGACTCAACTGTATATCACTTCCTTTCGTAGTAACTGAATTTT
CTAGGTCTTTTCAAGAAATTATGTCACGAATAGCTCTTGCCACATCTACA
AACGATTGCCCTTGAGATCTTTTTTATAGTTGAATTCAAGATAAATTTCA
TTAAAGGGACATAAAAGTAGTAAAATGTAAACATTGCGCGAACCACGTGT
CATTAAAGAGAACAATTAAAATCACGTGTCTAAAACAAACTTGTAAAAAA
ATTGAAACAATCAAAATCAGCCATAATTGTTTTTATTTTTTATTTTGACA
TGTGACATTTGTTTTGATTTTGTATCCCGCTGCATACGGTTTGTTTACAA
ATTTTGTCAGTACTTTTATGTNTATTTTGACATGTGACATTTGTTTTGAT
TTTGTATCCCGCTGCATACGGTTTGTTTACAAATTTTGTCAGTACTTTTA
TGTCCCTTTAAAACACTTTTTTGGGCAAGATTATTAAACCTCAGTTTTTT
TTAATTAAATGACTTACATAATTGCATATTTCCAGGAAATATTTGTACGT
TGTGTCCATATCGTAATGTTCTGATGCCATGAAGGCTGTATTGATGGCAA
TACATCCAATAATAATCCCCTCAAAGGCTGTACTTGATACAAATTTGAAG
AAGAACGCGCGACAGCGAAGGCTAAAGGTAGGATTATCACCAAGCACTGG
TGGCAGGGAATAATTAATCTCCTCTTTTTTCGCTTTCGGTTTTTTCTTCT
GTTCAACAGGAACAGTATACCGTTTGTTGCCATCAATCTCCTCTACGGGT
GAGGGACCTTCTAAAAATTCCACATAATGTTCTCCGTCGAATGAATACGT
AGATGCGGTACGTTTGACTCTGTTCAGTTTCTCAAGCTCGATTTCTGGGT
CGGGATTGCCGTTGATCTCCATCTCGTACGAAGCGCTGACGACGGCCAGC
ACAAGATTGAGTAGGTAAAATGGACCCAAGAAGACAGCCAATAAGAAATA
GATCATGTACCATTCACCCATTGCTGATATCACCTGTAATAAAACAAACA
AATGAAGAATCATTACACGTTTTTNACAGCCAATAAGAAATAGATCATGT
ACCATTCACCCATTGCTGATATCACCTGTAATAAAACAAACAAATGAAGA
ATCATTACACGTTTTTTTATAAGTACATCCAAAGTTTTTGAAACCTTTGA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033030XLOC_033030Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052165-exon-scaffold_211-1575043694:73416..73467TCONS_00052165-exon-scaffold_211-1575043694:73416..73467Clytia hemisphaericaexon
TCONS_00052165-exon-scaffold_211-1575043694:71367..72032TCONS_00052165-exon-scaffold_211-1575043694:71367..72032Clytia hemisphaericaexon
TCONS_00052165-exon-scaffold_211-1510915933:73416..73467TCONS_00052165-exon-scaffold_211-1510915933:73416..73467Clytia hemisphaericaexon
TCONS_00052165-exon-scaffold_211-1510915933:71367..72032TCONS_00052165-exon-scaffold_211-1510915933:71367..72032Clytia hemisphaericaexon
TCONS_00052165-exon-scaffold_211-1491911889:73416..73467TCONS_00052165-exon-scaffold_211-1491911889:73416..73467Clytia hemisphaericaexon
TCONS_00052165-exon-scaffold_211-1491911889:71367..72032TCONS_00052165-exon-scaffold_211-1491911889:71367..72032Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_211supercontigscaffold_211:71367..73467 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.010879	0.073763	0.707999	0.292994	0	0	0	0.520594	0.516203	0.305877	0.515485	0	0.52215	0.406869	0.201305	0.179709	0	0	0	0	0	0	0.251849	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052165 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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