TCONS_00052163 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052163
Unique NameTCONS_00052163
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1816

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052163 ID=TCONS_00052163|Name=TCONS_00052163|organism=Clytia hemisphaerica|type=transcript|length=1816bp
CCAGGCTAGAAAATATGAGAAAATGAACAGCAGAGGTGACCTACCAAACC
ATCAAAACAGATATGACGTGTACAACTGGTTGTCACAGCTTACAACAAAA
GAACCTTTAATCAACCAATGGTTAAACGAAGGAGATGGAAACCATGTCAT
TGAATTGTATAAAAACAATGGAAACCAATCGAATGGACCAAGTCTATGGG
TATGGGTGGTTTGTTTTCTATCAGTGGCTGTGATTTGTATGGGTATTGTG
ATTCTGATTGGATTGGGAAAGTGTTGCAAATGGGAACCAAGCCATGGAAA
AAATTACGATTTATGGAAATTGACCAAGACTGGTGCTCGAAAGTTGTGCA
AAAAAGCATCAAGGAATCAAGGGCGCAACGATAGAAATGAAAATGGTGAC
CCTTATGAGAGGCCAGTAGCCATGCAATTAGATGAAATTATTGTGTACCA
ACAAGGACGAAGAGTGACTCtcgaaaatgatgaaaaaactcAATTGTTGA
AAGAAACCATAGAGAACCAACAAAGTGATTCTGATCGAAGTTCACCATTT
TCGCCTCAACGATCTTCAAAGAGAGCAAGTTCCAAACACAATAGCGTGCA
TTTCAGCCCAGACCGCGTTTCTTCACCTAGCCTGAAAGCGAAACAAGCTT
TAcaaaaaattaaatgtttaaCAAAAACACTATCAGCCTCTGGGACAACA
CCTGATAATAAACCAACAGTTGAGAATTTCCAGGCTAGACCTTTACCTCC
ATTGCCAACTTCACCAGAGTTTGTTCTACAAGAAGATTCACCTTTCAAAA
TTCACAGTCTATTTGACACTAGCCTGGATGAGCAACGTCATAACTCACAC
GGTGAGACAAAGGCTAAATTAAAATTAGAAGACCTTGAAAGACGCCTCCA
AAAGAACTCTAGTCAACAAGACTTATACTTGATTGACTTTAcatcaaaaa
ggaaaaacacTTTATCGGAATTTAGAAAACATAAATCGACCTATAAAAAT
CGTGCAAAGGAGATAAGTATGTTTGAGATGCTGCGGAATCGATCTAGTTC
CATCGATGAGCGATTATCAGAAGCATCATTGAAACGACAGCGAACTCGCG
TAAGACGATCACGAAGTTTAGACGACTTGGATAATGTTACGGTAAACGAA
ATCTATGTCGATATCAAAACGTATGAGGAAGTACCTGAAGAAATGCAAAA
ACAAACCCCCCTGAAAGAACCATACGATAGCAACCGTGTAACGGAATATT
CACCTAGAGACGGGGGCTTAGCTATGATGTCTCCCCGAGACGGGGGTATG
ACAGTTAGTACAAATACAATTTATGGTACAATCAAAGGTGAAAACGCATA
CGCAAGAATCACCGACCTACCTGCGGTTGCAAATCGATTAGCAATACAGA
ACCGCCCAATGCCGCCCACTCCAACTTTACTGGACTTGTGTTTCATGAAG
CAGAATCCCGCCTTGCCACCCCATCAACAGaataaaaaaccaaaaaacca
tATCTATCAGAGAGCAAATCGCGGGAGACCTCTTTCGCAACAATTTCCAT
CTTTTAGAAGTAGTATTTCAGGTACAAGCGGACCCTATGCCAAGATCAAC
GATGTTATGGGCTTACcaagaaattcaagattttattCATCAAGTTAATA
TTATCATAGATTTCGAACTGTAAAGGGTGTAGATTTGTTGCAGTTTTAAT
GCATCTTATTTTTGTGTAAATAGAAAAGGCAGtttatattttgatgaaat
aaaaaatcattcatACCATGTCTTTTTTGCTCAGCTCTCTCCAAAAGTGT
GTGATAGAAGTGGTCT
Run BLAST on NCBI

transcript from alignment at scaffold_211:17365..22065-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052163 ID=TCONS_00052163|Name=TCONS_00052163|organism=Clytia hemisphaerica|type=transcript|length=4701bp|location=Sequence derived from alignment at scaffold_211:17365..22065- (Clytia hemisphaerica)
CCAGGCTAGAAAATATGAGAAAATGAACAGCAGAGGTGACCTACCAAACC
ATCAAAACAGATATGACGTGTACAACTGGTTGTCACAGCTTACAACAAAA
GAACCTTTAATCAACCAATGGTTAAACGAAGGAGATGGAAACCATGTCAT
TGAATTGTATAAAAACAATGGAAACCAATCGAATGGACCAAGTAAGTTAA
ACTCTCAACCTTTTACTTGGACCCAATAGGGGTTGAAATAGCGAGTTTGT
GTGTTTTTCTGCAACGGAAACGGATAGCTTCAGACCAGCTGAGGACGACG
GTAAAAAAAGGCACTTTTACTGTCCTCGACTTTGCGGGTCAGAACAGCGG
GTTTTTTTTAATCCGCTGGATACACTCTTCATTACAAACAAGAGTCCCTT
TAAAAATGATTTCCCTTTCAACTCCTTCAAAATCTAATAAAAATACATCT
TACATAACACGAAAAAGCCTGAAATTCCAAAGAATTTTCTCCACCCATTT
CTGGTCGACCATGGTTCAAATGGTTACTTCTTAAAACAGATACTTGGTGT
ATCGATTATTTGTCTAAAGTAGTCAATACCAGCAATATTTATGTGAATTT
TTCAGGTCTATGGGTATGGGTGGTTTGTTTTCTATCAGTGGCTGTGATTT
GTATGGGTATTGTGATTCTGATTGGATTGGGAAAGTGTTGCAAATGGTAA
GTCTTCATTTTAGAATCTGTTTTACCGAGATGGGGAATCCGACTTTGGAG
TGAGTTTAGAGCGAATCAACACATGTCAGANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCTCCACCCATTTCTGGTC
GACCATGGTTCAAATGGTTACTTCTTAAAACAGATACTTGGTGTATCGAT
TATTTGTCTAAAGTAGTCAATACCAGCAATATTTATGTGAATTTTTCAGG
TCTATGGGTATGGGTGGTTTGTTTTCTATCAGTGGCTGTGATTTGTATGG
GTATTGTGATTCTGATTGGATTGGGAAAGTGTTGCAAATGGTAAGTCTTC
ATTTTAGAATCTGTTTTACCGAGATGGGGAATCCGACTTTGGAGTGAGTT
TAGAGCGAATCAACACATGTCAGACACCGATAGAGGAAATTTTACAAACA
CCAATTTCATTGGTTTTGATAGTTGAAAGGAAAGATTTGCACTTGAAACA
TCCCTGTCACACAGCCCCGGTGAAACCCATAGTGAGGATAAATAGGAATT
TTAATTTTTCTGCGGTCAAAGGTCATTGGGGATGGTATTGGAGAGCAATT
TTTTCCATTGAATTTTTTAAATGGGATGAAAACAAAGTTTTCTAGTGGGG
CTGAAATTGTTGGGTATTTCTCCCACCGGGACGGAATTTTTGGCTAAATT
GTTGAGTGAGGCGGGTCTGTGACAAAGGGATGTCTTGAAAATCGTTAACG
ATTATCCAAATGAAACTGTATGGACTGGCGTTTCTTGTCGGGAAGAAAAT
ATTCAAAAACACTGAATAATCGATCATGGTTGTTACCATTTCCAACTACC
TCGTAACCAATATTTTTTTAATGTATTCGTTGTTTTAACTTAAATTACTG
ACTTTGCGAGAAAAGATCACTTTTATTAGAAATCGGTGTCGAATAAAGAT
TTGGCAGTACAGATAACGAAGTGACGGTTCTCAAAACAATACATGCTGAA
TGATATCACTTTTATTTTCAAACAGGGAACCAAGCCATGGAAAAAATTAC
GATTTATGGAAATTGACCAAGACTGGTGCTCGAAAGTTGTGCAAAAAGTA
GGTCTTTATTTTATCGTTTATCAGTACTTTTCTTAATAATGCGATTGTTC
TTTTAAAGAAAGCTAACTTGGGACACTACTCTTGGGCGGTACTTTTCTCT
AATTTAATTTTTGCAATGAGAATTCTAATTCTTTTATTCAGAGCATCAAG
GAATCAAGGGCGCAACGATAGAAATGGTATGACGTTTGTTTCTTTGTAAA
CCTACTCGAGGAAGGTAGAAGTACAAATAGTCTCTCGAAACCTAGCCAAA
CGTTAATTTAGTTATCCACGATTAACTTCAAATCTAATTGGGTAGAAAAC
TTTTCAATTCGCCAAAATCAATTAGCCAGGGGATGCTTAGTAGATCCCAG
AGTATATTCGACACAAAACAGATTGAATGTTTTTATTGGTTGTTCTGAAA
GAAAGGTTCACTCCTCAATGCTGATAGCCATAAAATTAAATTCATTGATT
CATAGAAAATGGTGACCCTTATGAGAGGCCAGTAGCCATGCAATTAGATG
AAATTATTGTGTACCAACAAGGACGAAGAGTGACTCTCGAAAATGATGAA
AAAACTCAATTGTTGAAAGAAACCATAGAGAACCAACAAAGTGGTAAGAA
ATTCTAGATCTCAAATGTAACAGAAGACAAGAACTGAAATTCCACAAAAA
AAATTTATGTTGTCTGTAGCATTATTACATTCAGCTTTCTTTTTAAATTA
AGATGGCATGAAAAGGTATAAAGTTTTTTTTTGGATTTCAAATGCGCGTA
CACCCCTTAACTAGGTCTTAGGTCCATACCTAACAAAGATTGGGCCATCT
CATATAATGCCAGTGGCACTTGATGGGTTAATCAGACAAGTCTTGACCGA
AGGTCTTCAACAATAGCCTACAAATTCAGTAAACTTAACTCCTTGAATTC
GTATTTTTTTAGATTCTGATCGAAGTTCACCATTTTCGCCTCAACGATCT
TCAAAGAGAGCAAGTTCCAAACACAATAGCGTGCATTTCAGCCCAGACCG
CGTTTCTTCACCTAGCCTGAAAGCGAAACAAGCTTTACAAAAAATTAAAT
GTTTAACAAAAACACTATCAGCCTCTGGGACAACACCTGATAATAAACCA
ACAGTTGAGAATTTCCAGGCTAGACCTTTACCTCCATTGCCAACTTCACC
AGAGTTTGTTCTACAAGAAGATTCACCTTTCAAAATTCACAGTCTATTTG
ACACTAGCCTGGATGAGCAACGTCATAACTCACACGGTGAGACAAAGGCT
AAATTAAAATTAGAAGACCTTGAAAGACGCCTCCAAAAGAACTCTAGTCA
ACAAGACTTATACTTGATTGACTTTACATCAAAAAGGAAAAACACTTTAT
CGGAATTTAGAAAACATAAATCGACCTATAAAAATCGTGCAAAGGAGATA
AGTATGTTTGAGATGCTGCGGAATCGATCTAGTTCCATCGATGAGCGATT
ATCAGAAGCATCATTGAAACGACAGCGAACTCGCGTAAGACGATCACGAA
GTTTAGACGACTTGGATAATGTTACGGTAAACGAAATCTATGTCGATATC
AAAACGTATGAGGAAGTACCTGAAGAAATGCAAAAACAAACCCCCCTGAA
AGAACCATACGATAGCAACCGTGTAACGGAATATTCACCTAGAGACGGGG
GCTTAGCTATGATGTCTCCCCGAGACGGGGGTATGACAGTTAGTACAAAT
ACAATTTATGGTACAATCAAAGGTGAAAACGCATACGCAAGAATCACCGA
CCTACCTGCGGTTGCAAATCGATTAGCAATACAGAACCGCCCAATGCCGC
CCACTCCAACTTTACTGGACTTGTGTTTCATGAAGCAGAATCCCGCCTTG
CCACCCCATCAACAGAATAAAAAACCAAAAAACCATATCTATCAGAGAGC
AAATCGCGGGAGACCTCTTTCGCAACAATTTCCATCTTTTAGAAGTAGTA
TTTCAGGTACAAGCGGACCCTATGCCAAGATCAACGATGTTATGGGCTTA
CCAAGAAATTCAAGATTTTATTCATCAAGTTAATATTATCATAGATTTCG
AACTGTAAAGGGTGTAGATTTGTTGCAGTTTTAATGCATCTTATTTTTGT
GTAAATAGAAAAGGCAGTTTATATTTTGATGAAATAAAAAATCATTCATA
CCATGTCTTTTTTGCTCAGCTCTCTCCAAAAGTGTGTGATAGAAGTGGTC
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033029XLOC_033029Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052163-exon-scaffold_211-1575043694:21875..22065TCONS_00052163-exon-scaffold_211-1575043694:21875..22065Clytia hemisphaericaexon
TCONS_00052163-exon-scaffold_211-1575043694:20326..20416TCONS_00052163-exon-scaffold_211-1575043694:20326..20416Clytia hemisphaericaexon
TCONS_00052163-exon-scaffold_211-1575043694:19569..19640TCONS_00052163-exon-scaffold_211-1575043694:19569..19640Clytia hemisphaericaexon
TCONS_00052163-exon-scaffold_211-1575043694:19390..19424TCONS_00052163-exon-scaffold_211-1575043694:19390..19424Clytia hemisphaericaexon
TCONS_00052163-exon-scaffold_211-1575043694:18973..19110TCONS_00052163-exon-scaffold_211-1575043694:18973..19110Clytia hemisphaericaexon
TCONS_00052163-exon-scaffold_211-1575043694:17365..18653TCONS_00052163-exon-scaffold_211-1575043694:17365..18653Clytia hemisphaericaexon
TCONS_00052163-exon-scaffold_211-1510915933:21875..22065TCONS_00052163-exon-scaffold_211-1510915933:21875..22065Clytia hemisphaericaexon
TCONS_00052163-exon-scaffold_211-1510915933:20326..20416TCONS_00052163-exon-scaffold_211-1510915933:20326..20416Clytia hemisphaericaexon
TCONS_00052163-exon-scaffold_211-1510915933:19569..19640TCONS_00052163-exon-scaffold_211-1510915933:19569..19640Clytia hemisphaericaexon
TCONS_00052163-exon-scaffold_211-1510915933:19390..19424TCONS_00052163-exon-scaffold_211-1510915933:19390..19424Clytia hemisphaericaexon
TCONS_00052163-exon-scaffold_211-1510915933:18973..19110TCONS_00052163-exon-scaffold_211-1510915933:18973..19110Clytia hemisphaericaexon
TCONS_00052163-exon-scaffold_211-1510915933:17365..18653TCONS_00052163-exon-scaffold_211-1510915933:17365..18653Clytia hemisphaericaexon
TCONS_00052163-exon-scaffold_211-1491911889:21875..22065TCONS_00052163-exon-scaffold_211-1491911889:21875..22065Clytia hemisphaericaexon
TCONS_00052163-exon-scaffold_211-1491911889:20326..20416TCONS_00052163-exon-scaffold_211-1491911889:20326..20416Clytia hemisphaericaexon
TCONS_00052163-exon-scaffold_211-1491911889:19569..19640TCONS_00052163-exon-scaffold_211-1491911889:19569..19640Clytia hemisphaericaexon
TCONS_00052163-exon-scaffold_211-1491911889:19390..19424TCONS_00052163-exon-scaffold_211-1491911889:19390..19424Clytia hemisphaericaexon
TCONS_00052163-exon-scaffold_211-1491911889:18973..19110TCONS_00052163-exon-scaffold_211-1491911889:18973..19110Clytia hemisphaericaexon
TCONS_00052163-exon-scaffold_211-1491911889:17365..18653TCONS_00052163-exon-scaffold_211-1491911889:17365..18653Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_211supercontigscaffold_211:17365..22065 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.167057	0.107643	0.424944	0.464652	0	0.0117631	0.0425752	0.0398584	0.0744155	0.0691317	0.134389	0.0367579	0.78582	0.602538	0.40766	0.39014	7.96815	14.548	0.727519	0.638506	4.65328	4.24789	1.67283	2.98021	4.1836	4.08281	2.61852	3.26301	0.0857631	0.0873791
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052163 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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