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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052139 ID=TCONS_00052139|Name=TCONS_00052139|organism=Clytia hemisphaerica|type=transcript|length=1274bp
CTTACTTTTTATACTGTCGATCTGGCTCTGAATTACGTCACCGAGCTTTT
CTTTTATATTATCGAGGAAAACCGAAAAACCAGATTTCCGATTTTCTTAA
TGACGTcacttgtaaatatttttatttttcactgatttttatttcctttt
ttcattaaaaaattaatatcaAATACAAGGTTGATTTTTTCTTCGttgaa
gattttcgaaaaatgaaataaaataaaatatgtaaaataaaaagtagctt
tgaaaaaatattaaagcaATAATTTCATACCTCTACAACGAGATGATAAA
ATATCGTAATATTTTAATAATAACCTAAAATATTAGGTATAATGTAATTG
AAGAGATTGTAATAATTTTTCTATAAGGATAAAGTTCTTGAACAAATTGT
GAACAAGAATTGCTATTTATGATCAGTTTACCGCCAGAAAGACaattttt
ccttataattaAAGTCGTGACAGAAATTCCGTGTTTGGTAATTTTTTCCT
AACCTCTCTTCAAATTATTTGTACTTCATAAAACTTCCTAAATATATGGA
TAATGATATTTGAACATAGTTGACAAAATGTGCTATGGAACATCCATATT
TGGTAATTATTTCTTACCTAAACTTTTGTACCAAAGGTGTGCCTATAATT
ATAAAACTTCCTAAATATGTGGATAATAATAAAACctatatgaatatttt
tttaaatgctcaCAGATAAAAACTACTTTATTTTACATATTCGTCAAAAT
ATGGAGAATCACTATCCCAAGGTATCCGCTAATTTTCCGTTTCCGACTTG
TTTTTTGTTGACCGTTGCTGGATCGTTTCCGTTTTACGCCCATCGCCACG
TCGAAAAATTGATACAGGGATGCGATATTGAAACTGTTGAAAATGGAGTC
GTAATCTTTCATGATTTCGTCCCCGATTTTTGCCAACTGCTCAGCGATCT
CGGTACTGATCGTGTATTTCCGGCACACTCTCTTAAATGCCATGACTTTC
TCCGTACTATCGGATAAGCTGACGGAACGTCGTTTTGGCGTTACCGTCAT
ATTAGAGAAATCAAATCTGACGGTGGTGGTTGGCGTATTTTTGGGCGTCC
GTGGTGATAATAGTTTGCTGCGTGGGAAGCAGTCGTCAGTGGAGCTATAT
GAGCGGCGCTTAACCATTCTGTTTAAAATATATATGACCAAACGGTTGGT
TGTATTCTATGTTAATGTCCAATACTTCGGTTTTTTATCCTATTTGTCAC
GTATCtttctttcttccttttttt Run BLAST on NCBI protein sequence of TCONS_00052139-protein >TCONS_00052139-protein ID=TCONS_00052139-protein|Name=TCONS_00052139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
MVKRRSYSSTDDCFPRSKLLSPRTPKNTPTTTVRFDFSNMTVTPKRRSVS
LSDSTEKVMAFKRVCRKYTISTEIAEQLAKIGDEIMKDYDSIFNSFNIAS
LYQFFDVAMGVKRKRSSNGQQKTSRKRKISGYLGIVILHILTNM Run BLAST on NCBI transcript from alignment at scaffold_210:131830..133103 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052139 ID=TCONS_00052139|Name=TCONS_00052139|organism=Clytia hemisphaerica|type=transcript|length=1274bp|location=Sequence derived from alignment at scaffold_210:131830..133103 (Clytia hemisphaerica)
aaaaaaaggaagaaagaaaGATACGTGACAAATAGGATAAAAAACCGAAG
TATTGGACATTAACATAGAATACAACCAACCGTTTGGTCATATATATTTT
AAACAGAATGGTTAAGCGCCGCTCATATAGCTCCACTGACGACTGCTTCC
CACGCAGCAAACTATTATCACCACGGACGCCCAAAAATACGCCAACCACC
ACCGTCAGATTTGATTTCTCTAATATGACGGTAACGCCAAAACGACGTTC
CGTCAGCTTATCCGATAGTACGGAGAAAGTCATGGCATTTAAGAGAGTGT
GCCGGAAATACACGATCAGTACCGAGATCGCTGAGCAGTTGGCAAAAATC
GGGGACGAAATCATGAAAGATTACGACTCCATTTTCAACAGTTTCAATAT
CGCATCCCTGTATCAATTTTTCGACGTGGCGATGGGCGTAAAACGGAAAC
GATCCAGCAACGGTCAACAAAAAACAAGTCGGAAACGGAAAATTAGCGGA
TACCTTGGGATAGTGATTCTCCATATTTTGACGAATATGTAAAATAAAGT
AGTTTTTATCTGtgagcatttaaaaaaatattcatatagGTTTTATTATT
ATCCACATATTTAGGAAGTTTTATAATTATAGGCACACCTTTGGTACAAA
AGTTTAGGTAAGAAATAATTACCAAATATGGATGTTCCATAGCACATTTT
GTCAACTATGTTCAAATATCATTATCCATATATTTAGGAAGTTTTATGAA
GTACAAATAATTTGAAGAGAGGTTAGGAAAAAATTACCAAACACGGAATT
TCTGTCACGACTTtaattataaggaaaaattGTCTTTCTGGCGGTAAACT
GATCATAAATAGCAATTCTTGTTCACAATTTGTTCAAGAACTTTATCCTT
ATAGAAAAATTATTACAATCTCTTCAATTACATTATACCTAATATTTTAG
GTTATTATTAAAATATTACGATATTTTATCATCTCGTTGTAGAGGTATGA
AATTATtgctttaatattttttcaaagctactttttattttacatatttt
attttatttcatttttcgaaaatcttcaaCGAAGAAAAAATCAACCTTGT
ATTtgatattaattttttaatgaaaaaaggaaataaaaatcagtgaaaaa
taaaaatatttacaagtgACGTCATTAAGAAAATCGGAAATCTGGTTTTT
CGGTTTTCCTCGATAATATAAAAGAAAAGCTCGGTGACGTAATTCAGAGC
CAGATCGACAGTATAAAAAGTAAG Coding sequence (CDS) from alignment at scaffold_210:131830..133103 >TCONS_00052139 ID=TCONS_00052139|Name=TCONS_00052139|organism=Clytia hemisphaerica|type=CDS|length=435bp|location=Sequence derived from alignment at scaffold_210:131830..133103 (Clytia hemisphaerica)
ATGGTTAAGCGCCGCTCATATAGCTCCACTGACGACTGCTTCCCACGCAG
CAAACTATTATCACCACGGACGCCCAAAAATACGCCAACCACCACCGTCA
GATTTGATTTCTCTAATATGACGGTAACGCCAAAACGACGTTCCGTCAGC
TTATCCGATAGTACGGAGAAAGTCATGGCATTTAAGAGAGTGTGCCGGAA
ATACACGATCAGTACCGAGATCGCTGAGCAGTTGGCAAAAATCGGGGACG
AAATCATGAAAGATTACGACTCCATTTTCAACAGTTTCAATATCGCATCC
CTGTATCAATTTTTCGACGTGGCGATGGGCGTAAAACGGAAACGATCCAG
CAACGGTCAACAAAAAACAAGTCGGAAACGGAAAATTAGCGGATACCTTG
GGATAGTGATTCTCCATATTTTGACGAATATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052139-exon-scaffold_210-1491911889:131830..133103 | TCONS_00052139-exon-scaffold_210-1491911889:131830..133103 | Clytia hemisphaerica | exon |
| TCONS_00052139-exon-scaffold_210-1510915933:131830..133103 | TCONS_00052139-exon-scaffold_210-1510915933:131830..133103 | Clytia hemisphaerica | exon |
| TCONS_00052139-exon-scaffold_210-1575043694:131830..133103 | TCONS_00052139-exon-scaffold_210-1575043694:131830..133103 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_210 | supercontig | scaffold_210:131830..133103 . |
Blast
The following BLAST results are available for this feature:
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