TCONS_00052135 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052135
Unique NameTCONS_00052135
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length310

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052135 ID=TCONS_00052135|Name=TCONS_00052135|organism=Clytia hemisphaerica|type=transcript|length=310bp
GATTTGGCAAAATGCCCGGGTGACCAGCCACAGGACCCTGGTTGTTGACT
TTGAAGTAAAAATATAAAGGTATACCTCTATGATCCAGGGCTAACCTGGT
GTGTTAAAGCAATGTGGTCTTTAGTAATCTTTTCTTACAGAAGATTATGG
TACCACAACTGGTCCAGTAGCGATTGATGTTGGCCTTAGATCCAATGAAA
TAAATGGCCAGTTTTTGTATTATTGATTATATTATTTGATTATCTTTGat
acttattcactaattcttaatggagtgaattttttttctattttgtatac
tttttcttat
Run BLAST on NCBI

transcript from alignment at scaffold_210:28386..28695

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052135 ID=TCONS_00052135|Name=TCONS_00052135|organism=Clytia hemisphaerica|type=transcript|length=310bp|location=Sequence derived from alignment at scaffold_210:28386..28695 (Clytia hemisphaerica)
ataagaaaaagtatacaaaatagaaaaaaaattcactccattaagaatta
gtgaataagtatCAAAGATAATCAAATAATATAATCAATAATACAAAAAC
TGGCCATTTATTTCATTGGATCTAAGGCCAACATCAATCGCTACTGGACC
AGTTGTGGTACCATAATCTTCTGTAAGAAAAGATTACTAAAGACCACATT
GCTTTAACACACCAGGTTAGCCCTGGATCATAGAGGTATACCTTTATATT
TTTACTTCAAAGTCAACAACCAGGGTCCTGTGGCTGGTCACCCGGGCATT
TTGCCAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033015XLOC_033015Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052135-exon-scaffold_210-1491911889:28386..28695TCONS_00052135-exon-scaffold_210-1491911889:28386..28695Clytia hemisphaericaexon
TCONS_00052135-exon-scaffold_210-1510915933:28386..28695TCONS_00052135-exon-scaffold_210-1510915933:28386..28695Clytia hemisphaericaexon
TCONS_00052135-exon-scaffold_210-1575043694:28386..28695TCONS_00052135-exon-scaffold_210-1575043694:28386..28695Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_210supercontigscaffold_210:28386..28695 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
870.4	985.545	923.507	957.07	1.20475	1.51163	0.751608	0.874816	6.49643	17.9818	8.75097	7.49297	2.425	4.3062	10.3457	10.5726	14.5132	17.5119	1.52956	2.34342	38.0165	27.2949	517.345	429.093	0	1.43978	26.5564	40.5379	382.537	487.533
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052135 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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