Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052127 ID=TCONS_00052127|Name=TCONS_00052127|organism=Clytia hemisphaerica|type=transcript|length=6738bpRun BLAST on NCBI protein sequence of TCONS_00052127-protein >TCONS_00052127-protein ID=TCONS_00052127-protein|Name=TCONS_00052127-protein|organism=Clytia hemisphaerica|type=polypeptide|length=926bp MKRLDVDSALPVSSTDAGPSTLEEIPKCGTTLGILTLQRKQKEALRNTASRun BLAST on NCBI transcript from alignment at scaffold_210:127177..189387- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052127 ID=TCONS_00052127|Name=TCONS_00052127|organism=Clytia hemisphaerica|type=transcript|length=62211bp|location=Sequence derived from alignment at scaffold_210:127177..189387- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_210:127177..189387- >TCONS_00052127 ID=TCONS_00052127|Name=TCONS_00052127|organism=Clytia hemisphaerica|type=CDS|length=58401bp|location=Sequence derived from alignment at scaffold_210:127177..189387- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052127 vs. Swiss-Prot (Human)
Match: BTAF1 (TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1 PE=1 SV=2) HSP 1 Score: 1052.35 bits (2720), Expect = 0.000e+0 Identity = 556/903 (61.57%), Postives = 685/903 (75.86%), Query Frame = 2 Query: 1994 GILTLQRKQKEALRNTASRRGKLXXXXXXXXXXXXXXXXXAKEMGVTAALLKEIESDEANASLVVQRLGGTTALSTCAERMGEELPIILPALWDTCCNYVINTVKMSTDQVHN-----EAELKQIINSLQVLEATVLALHQSLKKQTKSLLPHLLNCFNYPYTSIRHMASRCFGVLSKVITTETMEIVLTKVVDVLKQSENVMCRQGAIEAIIHIIENLGMDXXXXXXXXXXXXXGRMSDHSEEIRLMATNCFATLVQLMPLEASIPDPPNMSNFLIKKKEDERHFLDQLLDGSKLDKFSIPVPIKCELRKYQQDGVNWLAFLKKYNLHGILCDDMGLGKTLQSICIMAADYHNMLKKFKISGKDEFRPKPSLVVCPPTLTGHWCYEVEKFCSKEHLNPLHYTGPPSERQRLQGQLKKHNLVVASYDIVRNDCDFFLLHHWNYCILDEGHIIKNSKTKLSKVIKQLRADHRVILSGTPIQNNVLELWSLFDFLMPGFLGSEREFTARFGRPILQSRDAKSSSKEQEAGALAMESLHKQTLPFLLRRVKEDVLQDLPPKIIQDYYCELSSLQVKLYEDFSRSKARRNVDSSVNS-----EEKEPQPKATGHIFQALQYLRKVCNHPSLVLTKSHPEYDTVIEDLRCEKSSLNDVQHSGKLVALKQLLLDCGIGVSDNNSSEDALTSVVSQHRALIFCQLKSMLNIVERDLLKAQMPSVTYSRLDGSVPAGSRHSIVQSFNNDPSIDVXXXXXXXXXXXXXXXXADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLIARGTLEEKIMGLQKFKLNIANSVITQDNSSLHSMDTSQILDLFTVDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXIMDEMDELWDEKQYENEYDLDNFMGSLK 4672 GI+TL R QK A T SRRG + + G + +L +E DEA +VQR G AL+T + G E+ + LP LWD + NT+ ++ + ++ ++++NSLQV E ++ L LPHL C YP T++RHMA+RC GV+SK+ T ETM I L KV+ L ++ + ++GAIEA+ ++E L + I+PYIVLL+VPVLGRMSD ++ +R MAT CFATL++LMPLEA IPDPPNMS LI+ K ERHFL+QLLDG KL+ + IPVPI ELRKYQQDGVNWLAFL KY LHGILCDDMGLGKTLQSICI+A D+ + +++ S E P PSLVVCPPTLTGHW EV KFCS+E+LNPLHYTGPP+ER RLQ Q+K+HNL+VASYD+VRND DFF +NYCILDEGH+IKN KTKLSK +KQL A++R+ILSGTPIQNNVLELWSLFDFLMPGFLG+ER+F AR+G+PIL SRDA+SSS+EQEAG LAM++LH+Q LPFLLRR+KEDVLQDLPPKIIQDYYC LS LQV+LYEDF++S+A+ +VD +V+S E ++P+ KATGH+FQALQYLRK+CNHP+LVLT HPE+ T E L + SSL+D+QH+ KL ALKQLLLDCG+G + ++SE SVV+QHR LIFCQLKSML+IVE DLLK +PSVTY RLDGS+P G RHSIV FNNDPSIDVLLLTTHVGGLGLNLTGADTV+FVEHDWNPM+DLQAMDRAHRIGQK+VVNVYRLI RGTLEEKIMGLQKFK+NIAN+VI+Q+NSSL SM T Q+LDLFT+D + A + T K+S+K+I++ + +LWD++QY++EY L+NFM SLK Sbjct: 969 GIITLYRHQKAAFAIT-SRRGPTPKAVKAQIADLPA--------GSSGNIL--VELDEAQKPYLVQRRGAEFALTTIVKHFGGEMAVKLPHLWDAMVGPLRNTIDINNFDGKSLLDKGDSPAQELVNSLQVFETAAASMDSELHPLLVQHLPHLYMCLQYPSTAVRHMAARCVGVMSKIATMETMNIFLEKVLPWLGAIDDSVKQEGAIEALACVMEQLDVGIVPYIVLLVVPVLGRMSDQTDSVRFMATQCFATLIRLMPLEAGIPDPPNMSAELIQLKAKERHFLEQLLDGKKLENYKIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLG--NGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDK---------DGKAEKADTSTSGKASMKSILENLSDLWDQEQYDSEYSLENFMHSLK 1849 HSP 2 Score: 340.117 bits (871), Expect = 5.660e-94 Identity = 247/619 (39.90%), Postives = 369/619 (59.61%), Query Frame = 3 Query: 3 QMIDVNTEWLEDVALKLLCVFALDRFGDYVSDEVVAPVHETCAQTLGTVLHHMPKGSVIKVLSVLIKLQTQEKHWQVRHGGLLGLKYMLAVRKDMAIELLPDTIPWILKGFQXXXXXXXXXXXXXXXXXXXXXGSHFQDEIPNMXXXXXXXXXXXXXXXASTNSVMMLLSSLITITTNSNDLPAMTELNELVPRLWPFFRHNISSVRLSSLKTLDILIDSS--KNTSWLSTILAEQMRHLYQRIILEESNEIRSMACEVWLKVLKAVPIHFLQQTVNWHAPTWFRLLIHPPNIPIDYSLLTYXXXXXXXXXXXXXXETTAE-----QYYVANINVAM-DQTTQDSLIFXXXXXXXXXXGNLFA--------IFTQD-----ATKQTLMFLLTAIETFIASSSGSKILVSALVLHEWA---KACP--NLQCPPTVVETLHRVLSNQIVYDELLYLHQRLQIDSQALVNAFAENGLDILRGAQVDSYTLDMSNVIAGSLYNESCKS--LPASALPMIQSRQRQLTTTIETFQNDYQKLHIRVLSSVAGSLIALNRLTEKLNPIIHPIMDSVKKEENTELQKRTAIALAQLLTLCKNRTPCPNAKIVKNLCTFVCSDPNHTP 1775 +MI + EWLED+ ++LLCVFALDRFGD+VSDEVVAPV ETCAQTLG VL HM + V K + VL+KL TQE+ W+VRHGGLLG+KY LAVR+D+ LLP + I++G QD DDDVRAVAAA+L+PV E L ++P ++ LWD LLELDDLTASTNS+M LLSSL+T L LVPR+WPF H ISSVR ++L+TL L+ + ++SWL IL + +RH++Q +LE S EI + +VW+++L + ++ W L++ P ++PID ++L + + ++ Q Y+A + M D T+D ++ AR+ AA+ +G L + TQ+ + Q L+F L S S + + ALV+ EWA K C L P +++ +LS + YDE+ R+Q + + L+++ A+ +++ + T+D ++ + +++NE+ S L L + S+++Q+ T+ ++Q L +RV + A ++++L +L EKLNPII P+M+++KKEENT +Q A +A+LL C RTPCPN+KI+KNLC+ +C DP TP Sbjct: 330 EMIQQHQEWLEDLVIRLLCVFALDRFGDFVSDEVVAPVRETCAQTLGVVLKHMNETGVHKTVDVLLKLLTQEQ-WEVRHGGLLGIKYALAVRQDVINTLLPKVLTRIIEGLQDLDDDVRAVAAASLVPVVESLVYLQTQKVPFIINTLWDALLELDDLTASTNSIMTLLSSLLTYP-QVQQCSIQQSLTVLVPRVWPFLHHTISSVRRAALETLFTLLSTQDQNSSSWLIPILPDMLRHIFQFCVLESSQEILDLIHKVWMELLSKASVQYVVAAACPWMGAWLCLMMQPSHLPIDLNMLLEVKARAKEKTGGKVRQGQSQNKEVLQEYIAGADTIMEDPATRDFVVMRARMMAAKLLGALCCCICDPGVNVVTQEIKPAESLGQLLLFHLN-------SKSALQRISVALVICEWAALQKECKAVTLAVQPRLLD----ILSEHLYYDEIAVPFTRMQNECKQLISSLADVHIEVGNRVNNNVLTIDQASDLVTTVFNEATSSFDLNPQVLQQLDSKRQQVQMTVTETNQEWQVLQLRVHTFAACAVVSLQQLPEKLNPIIKPLMETIKKEENTLVQNYAAQCIAKLLQQCTTRTPCPNSKIIKNLCSSLCVDPYLTP 935 The following BLAST results are available for this feature:
BLAST of TCONS_00052127 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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