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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052108 ID=TCONS_00052108|Name=TCONS_00052108|organism=Clytia hemisphaerica|type=transcript|length=1544bp
ccttttttttaaattgcgtTTTATTTGTAAGACTTGATCTgctggaaatt
tttcaattccagaactaaaaagccttaaaaatggaTGTTTTGGGACTTAC
ATCTAGCATTTTCAGCATTTTACtacacaaaatttaaaaaatttcagact
TAAAAAGGCTTTCTAATGGTCCCAATACCATTCTTACTCTCAaagttaca
agcttttatgccagtttttggatttgtttttcAATGAAGACCCTTgattt
ttcaatcatttcatTTTAGGATGGCGAGGTTCCTTCACTCAAAAACGTTC
TAGATGAACTTGGTTTGTCGTAGAATCTCCCccaaccaaaaaaaaacaaa
aaaaaacaggttCTGTTGATGTTTTAGTCCTTTAGAGCGAATTGGTCTTA
AACCATCGAGTAATGATATTTGATTGGTTTTATCATCTAAACCATCCCGA
AGACTAATTTTTCTGGAAAgctaattttcttataaatctCTACTATTTTT
CTTCGTAGGATTGATAATTGATTTAGCTTATTTGTCTAGTGTGTGTGTTT
TTAAAGTGTTGATTATTATTTTGACTCGTTATTTGTTTTCTTGTAACAAT
ATAGTGTTTTTCTTGCGATTATTTTTATATGGAAGACTATTTTCTAGATT
GCACCTTTGCTCAAAACTTTTCTAggtaaaaatgttgaatgtgAATGCGA
ATGTTGTGTTGTACTTTCAAGATACCTAGATTATTTTCAGGATTTGATTC
ATAGTTAATAATAAGCTTTTAGATTTCCCCTACCTATAGTATCTGTCCAT
GTAGATTTATTCAGATTTTCAATTACTAGAAAGTTCCGCGTGAAATCTCT
TGTCTTAATTTGGCTTAAACGCTGTTGACGTATTTTGAAATTGGAACCAT
TTTGCACATTTCAGTTAGGTTGTTTGTTATCATACTGATATTTTTGTTTG
TGGTCACgaaatctatttttaaagttatgTGAATGGACTTGATGAAACCA
CCGCTATCAGTTTTCAAGGATCTGTTTTCTACATTATCCAGTGATCTCGA
TAATTTGGTTATTAATTGGCTCCTTAAAACACCAATAAACGTACGATGGT
ATTTCTTTTTGTGATATTTAAACTTCATTGATCCCAAGAAGCTCCAATAT
GCTTCTTTCAATTGAGGGTTTAAAAACCAGCATTTTCTGAATCCACTTTT
AGCACTTACTTGTCCTTTAGATTTCATTCGAGCCAAACGGTAGAATTGGT
TTTCGACTATATATGTTTTTGTTATTTATGTTATATTGACAATTGTTAAT
TGTAAGggttttagatattttaagTTTAAAGTTGTTATTATTTTGACATC
TGATGTAtttatttgtcaatttttggtgTATTATTTTGTGTGCCTCATTG
CATTTTttcttttggtattttttagttgttttttgacgatacatttcaaa
ttttgtattAGAATATATTTATTACTATCTTAACAATActatgaatctta
aggaaaaagaaagataattgaAATACTTTTGTATTAGAGAAAAC Run BLAST on NCBI protein sequence of TCONS_00052108-protein >TCONS_00052108-protein ID=TCONS_00052108-protein|Name=TCONS_00052108-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MKSKGQVSAKSGFRKCWFLNPQLKEAYWSFLGSMKFKYHKKKYHRTFIGV
LRSQLITKLSRSLDNVENRSLKTDSGGFIKSIHITLKIDFVTTNKNISMI
TNNLTEMCKMVPISKYVNSV Run BLAST on NCBI transcript from alignment at scaffold_21:264614..266157 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052108 ID=TCONS_00052108|Name=TCONS_00052108|organism=Clytia hemisphaerica|type=transcript|length=1544bp|location=Sequence derived from alignment at scaffold_21:264614..266157 (Clytia hemisphaerica)
GTTTTCTCTAATACAAAAGTATTtcaattatctttctttttccttaagat
tcatagTATTGTTAAGATAGTAATAAATATATTCTaatacaaaatttgaa
atgtatcgtcaaaaaacaactaaaaaataccaaaagaaAAAATGCAATGA
GGCACACAAAATAATAcaccaaaaattgacaaataaaTACATCAGATGTC
AAAATAATAACAACTTTAAActtaaaatatctaaaaccCTTACAATTAAC
AATTGTCAATATAACATAAATAACAAAAACATATATAGTCGAAAACCAAT
TCTACCGTTTGGCTCGAATGAAATCTAAAGGACAAGTAAGTGCTAAAAGT
GGATTCAGAAAATGCTGGTTTTTAAACCCTCAATTGAAAGAAGCATATTG
GAGCTTCTTGGGATCAATGAAGTTTAAATATCACAAAAAGAAATACCATC
GTACGTTTATTGGTGTTTTAAGGAGCCAATTAATAACCAAATTATCGAGA
TCACTGGATAATGTAGAAAACAGATCCTTGAAAACTGATAGCGGTGGTTT
CATCAAGTCCATTCAcataactttaaaaatagatttcGTGACCACAAACA
AAAATATCAGTATGATAACAAACAACCTAACTGAAATGTGCAAAATGGTT
CCAATTTCAAAATACGTCAACAGCGTTTAAGCCAAATTAAGACAAGAGAT
TTCACGCGGAACTTTCTAGTAATTGAAAATCTGAATAAATCTACATGGAC
AGATACTATAGGTAGGGGAAATCTAAAAGCTTATTATTAACTATGAATCA
AATCCTGAAAATAATCTAGGTATCTTGAAAGTACAACACAACATTCGCAT
TcacattcaacatttttaccTAGAAAAGTTTTGAGCAAAGGTGCAATCTA
GAAAATAGTCTTCCATATAAAAATAATCGCAAGAAAAACACTATATTGTT
ACAAGAAAACAAATAACGAGTCAAAATAATAATCAACACTTTAAAAACAC
ACACACTAGACAAATAAGCTAAATCAATTATCAATCCTACGAAGAAAAAT
AGTAGagatttataagaaaattagcTTTCCAGAAAAATTAGTCTTCGGGA
TGGTTTAGATGATAAAACCAATCAAATATCATTACTCGATGGTTTAAGAC
CAATTCGCTCTAAAGGACTAAAACATCAACAGaacctgtttttttttgtt
tttttttggttggGGGAGATTCTACGACAAACCAAGTTCATCTAGAACGT
TTTTGAGTGAAGGAACCTCGCCATCCTAAAatgaaatgattgaaaaatcA
AGGGTCTTCATTgaaaaacaaatccaaaaactggcataaaagcttgtaac
ttTGAGAGTAAGAATGGTATTGGGACCATTAGAAAGCCTTTTTAagtctg
aaattttttaaattttgtgtaGTAAAATGCTGAAAATGCTAGATGTAAGT
CCCAAAACAtccatttttaaggctttttagttctggaattgaaaaatttc
cagcAGATCAAGTCTTACAAATAAAacgcaatttaaaaaaaagg Coding sequence (CDS) from alignment at scaffold_21:264614..266157 >TCONS_00052108 ID=TCONS_00052108|Name=TCONS_00052108|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_21:264614..266157 (Clytia hemisphaerica)
ATGAAATCTAAAGGACAAGTAAGTGCTAAAAGTGGATTCAGAAAATGCTG
GTTTTTAAACCCTCAATTGAAAGAAGCATATTGGAGCTTCTTGGGATCAA
TGAAGTTTAAATATCACAAAAAGAAATACCATCGTACGTTTATTGGTGTT
TTAAGGAGCCAATTAATAACCAAATTATCGAGATCACTGGATAATGTAGA
AAACAGATCCTTGAAAACTGATAGCGGTGGTTTCATCAAGTCCATTCAca
taactttaaaaatagatttcGTGACCACAAACAAAAATATCAGTATGATA
ACAAACAACCTAACTGAAATGTGCAAAATGGTTCCAATTTCAAAATACGT
CAACAGCGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052108-exon-scaffold_21-1491911889:264614..266157 | TCONS_00052108-exon-scaffold_21-1491911889:264614..266157 | Clytia hemisphaerica | exon |
| TCONS_00052108-exon-scaffold_21-1510915933:264614..266157 | TCONS_00052108-exon-scaffold_21-1510915933:264614..266157 | Clytia hemisphaerica | exon |
| TCONS_00052108-exon-scaffold_21-1575043694:264614..266157 | TCONS_00052108-exon-scaffold_21-1575043694:264614..266157 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_21 | supercontig | scaffold_21:264614..266157 . |
Blast
The following BLAST results are available for this feature:
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