TCONS_00052102 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052102
Unique NameTCONS_00052102
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length522

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052102 ID=TCONS_00052102|Name=TCONS_00052102|organism=Clytia hemisphaerica|type=transcript|length=522bp
GGtccttttaaaagtttctgcGGAACCATCAATCGATACCAGTGATTTGT
CAGCTATGGACTATTGACCAGTTTTAGATACATTATTGCATAATTGCTCA
TGAAGTAAcaataaagtcaaaaaaacttaGTTGTTGACCCTGGTTGACCC
TGGTAGAATTTGGCGTCAAAAATAGTCCCTCTTTTTAAAATGACGATGGG
ATGCTGAAAAGCGTTATGGTGACATAATCTAGATGATTTGAATGACCTAA
ATGTTTTGATCTATATCATTAGCAGTTCCTTGTCTTATAAATCATTTCCT
TATCAAAAGTACGACATTTTTTCTATCcctctttctctctctctttctct
ctctctctcttgaAAGCCTTCCTGTGGTTCATATGATAAATTAAGCCTCC
TGCAGGTCTTGGCAATTTTCAATCCCTATCAAATGTTTATTAGAAATAAC
TCCACCCCATGAGTGCCTTGAGTATCAACATATCTCGTACAGTGCTTTAT
TCAGTTTTTATATTTAATGAAT
Run BLAST on NCBI

transcript from alignment at scaffold_21:42648..43169

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052102 ID=TCONS_00052102|Name=TCONS_00052102|organism=Clytia hemisphaerica|type=transcript|length=522bp|location=Sequence derived from alignment at scaffold_21:42648..43169 (Clytia hemisphaerica)
ATTCATTAAATATAAAAACTGAATAAAGCACTGTACGAGATATGTTGATA
CTCAAGGCACTCATGGGGTGGAGTTATTTCTAATAAACATTTGATAGGGA
TTGAAAATTGCCAAGACCTGCAGGAGGCTTAATTTATCATATGAACCACA
GGAAGGCTTtcaagagagagagagagaaagagagagagaaagaggGATAG
AAAAAATGTCGTACTTTTGATAAGGAAATGATTTATAAGACAAGGAACTG
CTAATGATATAGATCAAAACATTTAGGTCATTCAAATCATCTAGATTATG
TCACCATAACGCTTTTCAGCATCCCATCGTCATTTTAAAAAGAGGGACTA
TTTTTGACGCCAAATTCTACCAGGGTCAACCAGGGTCAACAACtaagttt
ttttgactttattgTTACTTCATGAGCAATTATGCAATAATGTATCTAAA
ACTGGTCAATAGTCCATAGCTGACAAATCACTGGTATCGATTGATGGTTC
CgcagaaacttttaaaaggaCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032993XLOC_032993Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052102-exon-scaffold_21-1491911889:42648..43169TCONS_00052102-exon-scaffold_21-1491911889:42648..43169Clytia hemisphaericaexon
TCONS_00052102-exon-scaffold_21-1510915933:42648..43169TCONS_00052102-exon-scaffold_21-1510915933:42648..43169Clytia hemisphaericaexon
TCONS_00052102-exon-scaffold_21-1575043694:42648..43169TCONS_00052102-exon-scaffold_21-1575043694:42648..43169Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:42648..43169 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.226695	0.331595	0.898364	1.88338	0	0.120788	0	0	0	0	0	0	0	0.156574	0	0	0	0	0.240982	0.25217	0	0	0	0	0.365088	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052102 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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