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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052091 ID=TCONS_00052091|Name=TCONS_00052091|organism=Clytia hemisphaerica|type=transcript|length=805bp
aaaaaagcGTAGCCTGAGGATGGTCGGAAAAATGACTttaagaaaattca
aatttcgagaGCCTGAGGTTGATAGTGGGTACTGTTGGCCCATGTTAGCC
ATGTCTTCGATTATCTATTTCCTCCTGTTCGGAACGTTTTATTCATATGG
TGTTTGGCTTCCAAGAGTTATggaagaatttaattgcaatcaaGAACAAG
CTGccTGGGTTGGGTCAATAGCCAGCGGTTTGCTGGTACTTCTGGACTTG
CCCTCCGATCTTGCTTGTTACCATTTCGGTGTGTTTGCGATGTCAATCGT
TGGTTCAATACTATGTGGTGTTGGAATCATCGTGTCGTCATATCTTCAAA
ACATCTACCATCTTTATTTATCGTTTGGTGTGTTGTTAGGCATTGGTTCC
GCCCTTCTTTACACGCCCACTTTGGTAATGGTAGGGCGATGGTTCGACAG
ATACCAAGCCCCAGCTACAACACTTATGATGATCGGTGCTCCTATAGGAT
CTCTTATATTCAATCCACTGATGGAGAAAATCATGGAGAATTATAGCCTA
AGGGATGTGATGAATGTGTATGGAATCATGTTCCTGGCAATCACTTTCAT
TTGCTCATTTGGTTATATGCCGTTCAGCCCGATGTTTATAGAGAAATATG
AGACTTTAGAAGAGGATACAAATGGAACAGAGGCTAAAGAAGAGGTCaca
gaaatcgaaagtggattCGAATTCAGAGCTtctttgttcaaaaataaatc
atatttGTTGTTCTGCGCATGTCGAtttttcgccatttttgcaTATTATG
TTCCG Run BLAST on NCBI transcript from alignment at scaffold_21:175110..177522- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052091 ID=TCONS_00052091|Name=TCONS_00052091|organism=Clytia hemisphaerica|type=transcript|length=2413bp|location=Sequence derived from alignment at scaffold_21:175110..177522- (Clytia hemisphaerica)
AAAAAAGCGTAGCCTGAGGATGGTCGGAAAAATGACTTTAAGAAAATTCA
AATTTCGAGAGCCTGAGGTTGATAGTGGGTACTGTTGGCCCATGTTAGCC
ATGTCTTCGATTATCTATTTCCTCCTGTTCGGAACGTTTTATTCATATGG
TGTTTGGCTTCCAAGAGTTATGGAAGAATTTAATTGCAATCAAGAACAAG
CTGGTAAGTATAATATCTCTCCATTGTTGAAAAGATATTTCAGTCTGGTC
TATTAGGAGGTTGAAAAGAAAAAGTAAGACTCAATGGCAATAGTGTGCAA
AAATTTTAATCAAAACCTACCCCCTCCTTTAGTAGGCTGCCCACATCCCC
TCTGATAAGTTTTGATATAGGGGATGCGAATCAGGCTCACAAAACCGTTC
CGAACTTAGCAAAAAATCTGCTAACCAAAAAAAGAGTTGAATGATAGAGA
ACTTTGATTGACAGTTTGTCGTCTTTTGTTATCTTGAGAGTTTTGTTTGC
TAATTCAATTAATTTCGATAAACAAAAAGAAATAGAGGGAGTTTCTAAAC
ATCGACCAGAAATGGCGACCACGACCAGCGACCACGACCGGCGACCAGAT
AAATTTGGGTTATCGAGTTTACCTGCTTTCTCCACCGTAGAGAACATCCA
AATCGAGCCCTGATGTGGTTTTCAAATGAACCACTGAGCACGTGGCTGAG
ACTTTTGACGTTACCAGTCATTTTCTAGACAAAGTGACACTTTTTGACAA
CAATATTGACAGGGCAATTAAGTGTGATGCCTGTAAACTTTATTACACCA
AATATTTTAATTGTACCGAATGAGATGCCTTTAGTATGAATAGATAGAAA
TCGTCAGTAGGAAAATGCTGGGAAGGCCAGTTTTAGAGATATCAATCTCA
TCAATTACTCTATTGTCCTTATATTGTCAAAATGACTTATTTAGACGAAA
TAATGATCTGATGATCAAATATAAAGCTTCCTAAATAAATTCCAGCACAA
ATTTTGCCACTAATTAATTTGATGCCGAAAATACAAAAGGATAGAAATTG
ACACACTATTCAAGCTCCAAGAGCGGTGAAATGGCTGCACTACACGTTTT
ACACATGGCTTTGTAGTCACTGTAGGTGAGACAGGGGTGAGCTTACTCTT
CAATTCGATAAATAAATGATCATAAGAGAAAGACTCTACGGTGGAGAAAG
AGGAAAAACTCGATAACCCAAATTTATCTGGTCGCCGGTCGTGGTCGCTG
GTCGTGGTCGCCATTTCTGGTCGATGTTTAGAAACTCCCAGAAATAGAGG
AGAAAGAGAGATTTCTAGCCATATGTTCTTTTTATTTGAATCTTTATTTG
ATTTCTATTTACGTCATCAAATAACTCAAACAATACACATCGAGTTTTTT
GAAAAATACAAGTCGCCAAAATTCTGCAAAATACATAGCTATTAGGTAAT
TTTCTCGGAAGCGATATCAGAGCCTGATTCGCATCCCCTATATCAAAACT
AATTTGGGGATGCATGCAGCCTACTCCTTTAGAAATCCTCTTTCTCTTCA
ATTCATGATAATCGTAATGTAATCTTTGCGCTGGTAAGAATGAAATCTCC
TTCCTCATATCTTGGAAAGATATCATAAAGAGAGACGGCCTAGAACGTTA
TTATATAAAGTAACCTATAATTTCTTTCTGTCTTTCTGCCTGTCTATCTA
GAGAAAAGGCTGCTTAGTAAAACGTGCGGTTAAGATTGAAAGTGAAAGTG
AACCATTAACAAAATTGAATTTCTTAATAGCTTTTAAACAAATTTTGATT
TTCTTTCTCAGCCTGGGTTGGGTCAATAGCCAGCGGTTTGCTGGTACTTC
TGGACTTGCCCTCCGATCTTGCTTGTTACCATTTCGGTGTGTTTGCGATG
TCAATCGTTGGTTCAATACTATGTGGTGTTGGAATCATCGTGTCGTCATA
TCTTCAAAACATCTACCATCTTTATTTATCGTTTGGTGTGTTGTTAGGCA
TTGGTTCCGCCCTTCTTTACACGCCCACTTTGGTAATGGTAGGGCGATGG
TTCGACAGATACCAAGCCCCAGCTACAACACTTATGATGATCGGTGCTCC
TATAGGATCTCTTATATTCAATCCACTGATGGAGAAAATCATGGAGAATT
ATAGCCTAAGGGATGTGATGAATGTGTATGGAATCATGTTCCTGGCAATC
ACTTTCATTTGCTCATTTGGTTATATGCCGTTCAGCCCGATGTTTATAGA
GAAATATGAGACTTTAGAAGAGGATACAAATGGAACAGAGGCTAAAGAAG
AGGTCACAGAAATCGAAAGTGGATTCGAATTCAGAGCTTCTTTGTTCAAA
AATAAATCATATTTGTTGTTCTGCGCATGTCGATTTTTCGCCATTTTTGC
ATATTATGTTCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052091-exon-scaffold_21-1575043694:177320..177522 | TCONS_00052091-exon-scaffold_21-1575043694:177320..177522 | Clytia hemisphaerica | exon |
| TCONS_00052091-exon-scaffold_21-1575043694:175110..175711 | TCONS_00052091-exon-scaffold_21-1575043694:175110..175711 | Clytia hemisphaerica | exon |
| TCONS_00052091-exon-scaffold_21-1510915933:177320..177522 | TCONS_00052091-exon-scaffold_21-1510915933:177320..177522 | Clytia hemisphaerica | exon |
| TCONS_00052091-exon-scaffold_21-1510915933:175110..175711 | TCONS_00052091-exon-scaffold_21-1510915933:175110..175711 | Clytia hemisphaerica | exon |
| TCONS_00052091-exon-scaffold_21-1491911889:177320..177522 | TCONS_00052091-exon-scaffold_21-1491911889:177320..177522 | Clytia hemisphaerica | exon |
| TCONS_00052091-exon-scaffold_21-1491911889:175110..175711 | TCONS_00052091-exon-scaffold_21-1491911889:175110..175711 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_21 | supercontig | scaffold_21:175110..177522 - |
Blast
BLAST of TCONS_00052091 vs. Swiss-Prot (Human)
Match: MOT14 (Monocarboxylate transporter 14 OS=Homo sapiens GN=SLC16A14 PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.003e-24 Identity = 65/233 (27.90%), Postives = 119/233 (51.07%), Query Frame = 2
Query: 29 KMTLRKFKFREPEVDSGYCWPMLAMSSIIYFLLFGTFYSYGVWLPRVMEEFNCNQEQAAWVGSIASGXXXXXXXXXXXACYHFGVFAMSIVGSILCGVGIIVSSYLQNIYHLYLSFGVLLGIGSALLYTPTLVMVGRWFDRYQAPATTLMMIGAPIGSLIFNPLMEKIMENYSLRDVMNVYGIMFLAITFICSFGYMPFSPMFIEKYETLEEDTNGTEAKEEVTEIESGFEFR 727
K TL+ P +D G+ W M+ S ++ L+ G+ + GV +EEF+ ++ AWV S++ G+ +++ L G +I+G ++ +G ++S+Y N+++L+++FGV G+GS + Y P +VMVGR+F + +A A L G G+ + L++ + Y R+ M + G + L + +C P SP + E+D G A + +G + R
Sbjct: 19 KKTLKP----HPNIDGGWAWMMVLSSFFVHILIMGSQMALGVLNVEWLEEFHQSRGLTAWVSSLSMGITLIVGPFIGLFINTCGCRQTAIIGGLVNSLGWVLSAYAANVHYLFITFGVAAGLGSGMAYLPAVVMVGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLCAEYGWRNAMLIQGAVSLNLC-VCGALMRPLSPG-KNPNDPGEKDVRGLPAHSTESVKSTGQQGR 245
The following BLAST results are available for this feature:
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