TCONS_00052090 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052090
Unique NameTCONS_00052090
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2118

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052090 ID=TCONS_00052090|Name=TCONS_00052090|organism=Clytia hemisphaerica|type=transcript|length=2118bp
GATCAAATATGCTATTTCACTGGGCATCAGTGGCTCAACAGCCAGTCTCA
TGTTAACAGCTTGGTCAGCAAGCAATCTATTTGGTCGTCTAGCCTTTGGA
AGCTTTATATCCCGTTATCGCGATAAAGTCCTCATCACATATCAAATAGC
GATGTTTCTAAGCGGAGTGGTCAGCATTGGAGCTTATTTTGCCGACAATA
CATGGAGTTTGTTTCTCTATTGTTGTATTTATGGAATGTTGGATGGTTCG
AATATTGGATTAGCCAGTCTGGTGACGATTGATTTGACAAGTCCACTTGA
TTTAGGAGCAGCTTGGGGTATACAACAAACGATCAATGGAATTCCAACCA
TTGCTGGTCCTGTTCTGATTGGTGCAATGAACGATGCGAAGGTATTGAGT
GCGAATTACATGTTCGTTTTTACTGGTGGTACATTCATCCTTGGAAGTAT
TTTCATGAACTTTGCACGCGTGTTACGAAACCGTGAGAAATATGTTGTTG
AGGACAAAACACCATTTGATGAAGAAGTTACTGAACTTGCTGAAATAAGA
CCAAGAGCTGCAGCTTCCATTATTCCACGTAAAGCGAGTACAGCATTTGG
ACCGAAGAAAATTTCAGGCGAGATGCGGAGAAAGACAGCTGCAGGCATTG
TCACTGTTAAACAAGGTGGTAGACCAAAGAGATTATCACTACCTGATCAG
GATACTGATATGAAATCAAGTGAATTCCAAAGACCGATGAAAATGCGAAG
TCAAACAGTAATGACACCAAAGACAGAATATTCTTTTGAGAATCAATCAT
ATTCTTCTGATTGTCAAGATGAGGTTGAGAACAAACATAGAACATTTTCA
ATAAAAGAGGAAATTGAAGATCCAGAGAACGTAGAGGAAGAACTTTCTCA
AAGTGAAGCAAAAACAATGGAATAATATTCACGCCAACTGCAAGGATGTG
ACTccttttttgcaaagtaaaagGTCCTATTGATTAACATTATTCACACT
TTTTAACGCCTTCACCTCATTGGCGAAATCAGTTTAATTTAAGGCAACTT
TGAGCAATATCAAAGTTTCTATTGTGCGAATGCAACGCTAGTTTGTCTTT
CATTAGTTACGAAATCTTTGTTATCCAAACTTTGAAACTAGGCCGTGGCC
AGTGGAttgctaaagtttcaaaaataaagaaaaaattcaaaatgtccgtg
accaactttttgatatgtttcttaGTCAagttgagggtgctgattccgaa
tttgaatgttaccaagcttgtaaacccgcagttttttgagcaaaaaaatg
tattacattAAATTCTCAACTTTTATATTTCATTTGAAATCTGAATTTTT
AGATcttacaattttgcctgaaaacccaaaaatcgcaaattacgcaaaaa
ctgcgggtttacaagcttggtaacattcaaattcggaatcagcaccTTCA
AATTGACTaggaaacatatcaaaaagttggTCCAAACCAGGGCAGGAACT
GTTCAAGCTTTGAGCATTATGTTAACGGAGGTGTCGAGAGCGCTTTTTGT
TTATAAGCCCTGGTTAAAAGCAAACCACCTCAGTGCCATAGCCACTTTGA
AAAAGGTGTAAATTTCGTCAATATTTGATTTATTTGCTTTAATCTCTTCC
CTCTTTTTACCACTTTTACGTTGAGCCGACGTGTGCCACAGAACGAAATA
ACTAACTAACGCACTAACTATGTAAGAAGATAGTcttatgatttgaaaat
atactaATATGCACGCGATTTCTACTTGCCTTTTGCTGAAAATTGACTTT
CGGAGAGgcagttttagaaaaatcttgaattttttgaattttttctttat
ttttgaaactttaacaATCCACTGTCCACGGCCTACTTTAAAGGAAATTG
TTGAGCATACTTTCTTTCTATACATTTCATTAATCTATAACTTGTCTTTT
ACTATATTAATCTTGTACATAAGGGATGTAACATTTAAATATCCTCATCA
ATTATTATCTTCAAAAAATACTCCAGTTCTCGTGGAATCAGAATCAAATT
CTGAATGCTCCAACTCAGGAAGAAGATCTGCTTCAATTTATCagagaaaa
tattaattaaaatccTAT
Run BLAST on NCBI

protein sequence of TCONS_00052090-protein

>TCONS_00052090-protein ID=TCONS_00052090-protein|Name=TCONS_00052090-protein|organism=Clytia hemisphaerica|type=polypeptide|length=307bp
IKYAISLGISGSTASLMLTAWSASNLFGRLAFGSFISRYRDKVLITYQIA
MFLSGVVSIGAYFADNTWSLFLYCCIYGMLDGSNIGLASLVTIDLTSPLD
LGAAWGIQQTINGIPTIAGPVLIGAMNDAKVLSANYMFVFTGGTFILGSI
FMNFARVLRNREKYVVEDKTPFDEEVTELAEIRPRAAASIIPRKASTAFG
PKKISGEMRRKTAAGIVTVKQGGRPKRLSLPDQDTDMKSSEFQRPMKMRS
QTVMTPKTEYSFENQSYSSDCQDEVENKHRTFSIKEEIEDPENVEEELSQ
SEAKTME
Run BLAST on NCBI

transcript from alignment at scaffold_21:169681..173716-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052090 ID=TCONS_00052090|Name=TCONS_00052090|organism=Clytia hemisphaerica|type=transcript|length=4036bp|location=Sequence derived from alignment at scaffold_21:169681..173716- (Clytia hemisphaerica)
GATCAAATATGCTATTTCACTGGGCATCAGTGGCTCAACAGCCAGTCTCA TGTTAACAGCTTGGTCAGCAAGCAATCTATTTGGTCGTCTAGCCTTTGGA AGCTTTATATCCCGTTATCGCGATAAAGTCCTCATCACATATCAAATAGC GATGTTTCTAAGCGGAGTGGTCAGCATTGGAGCTTATTTTGCCGACAATA CATGGAGTTTGTTTCTCTATTGTTGTATTTATGGAATGTTGGATGGTTCG AATATTGGATTAGCCAGTCTGGTGACGATTGATTTGACAAGTCCACTTGA TTTAGGAGCAGCTTGGGGTATACAACAAACGATCAATGGAATTCCAACCA TTGCTGGTCCTGTTCTGATTGGTAAATATTTGTTTGTTGATAAATCGTCT TTGCGAATCAAAGAATTATATCCAAAATGACGCACTATTAATTAGTTGCT TTATAAAAGATCCAACTTCCGGAGTCAAACAGGAGGGCGGGGAGTCGGTA CTTAAGTCTCAGACATCATGTTGATTAGTTATGTGGTGGCATACCCAAAA AAGTCCTTTTAATACCGTGGGGTACTAGATTACCAAAAAAGTGGTATCCA ATATTCAAATTTCATTTTTAGAAAGGGTATAACTTCTCTAAAATGGGGTG ATGGTATGGAAAAAAACTCAAACCCCTTATATGTCTAAGTTTCAGTACTG ACCCCCACCCCCGAGTCAAATCTTTTTTTACTTTAGACATTTGAACCATA CCACAAGGTACAAAATACGCAAGACCNAAGACCGGTCCGATTTTCAGTTT AAATCATTTGGGGAGTCACATTTATGTCTGAGATTTACCGACCTTCCCCT GAATCAAATGATATTTTATTTTAGACGTTTGAACCAAATAAACCACATGG TGCATAATACGCAAGACCTTCATTCAGGGGAACCAAAACTCATTGAGTTG ACTAAGATAACGGTTGAATTTCAAACACTTTAGGTGCAATGAACGATGCG AAGGTATTGAGTGCGAATTACATGTTCGTTTTTACTGGTGGTACATTCAT CCTTGGAAGTATTTTCATGAACTTTGCACGCGTGTTACGAAACCGTGAGA AATATGTTGTTGAGGACAAAACACCATTTGATGAAGAAGTTACTGAACTT GCTGAAATAAGACCAAGAGCTGCAGCTTCCATTGTAAGCATAATTATTGT TAACTGCACACTTTTCTGTTACAGTAGACTCTCCATACTTAAGGCCAGTC TCCACTTGCGCGCGCTGCGATAGCTCCTTTTGGCTTCATTCCTTTTTTGC TTGGAAAAAAAATTACGTCATAAAAATGTAGCGCGCGCTCAAAAAATAAG TTGAACACATTTCAACTTTTTGCAACTGTTACGTCAGATCGCGTTAATGG AATTACTTCATTTTTCTTTTGACGTGGTAGCTTTGCTCGAAAAAGTGCGA TCGCAGCGCGCGCAAGTGGAGAACGGTCTTTAGAATTCATGATATGCACC ATTGTATCAATGTCTTCTAACATTAAATCACGGACCCAACAGCTGATTGG ATGCAAGTGACGTATTGACTGATGGGTCTATGGTGTAATGTCGAATGTCT TCAAATCGCATCCTTAAAAAACTTGAACACTTTGAATGAAAAACTCTCAC AAACGACTCCTTATTATGCTCTATAAACTCGACATAATTTTAACTCAAAA TTTTGACTTCCCTGTGATTCTACAAGTCTTTACTTTCAAACTTTTTAACT GAAAATCTTTTCTTCAATTTAGATTCCACGTAAAGCGAGTACAGCATTTG GACCGAAGAAAATTTCAGGCGAGGTAAGCGTTTAAGATTCTCAAGTACTG GTCGAGATTTAAATATACAGTCAACTCTCTCTCTCTCTAATTCGAACCTT TATTATTTGAATCTCTCTGTAATTCAAACTAAAGCATTAGCCCGCAAAGC TGGAAAGTCAAAACCTCTCCGTAATTCGAATTTTTCACTTATTCGAAGAA AATTCTTGGACCCTTGAAATCGAATTAGAGAGTGAACTGTACCTCGAATA GCAACCGATATTGATCTAATGGGTTGAAATGAAAAAGAAAATTATTTTCT TATGTGGAAGATCAAAATCAAAATCCAGCTAAAATCTTCTTATTTTGTTT ATACAGATGCGGAGAAAGACAGCTGCAGGCATTGTCACTGTTAAACAAGG TGGTAGACCAAAGAGATTATCACTACCTGATCAGGTAAAGCAAACTGCAT CATTTACATCTTTCACGTGATTCTTACATAGGAAGTGAAAAGGAAAATCT AAGTGTTACAAAATTACTTCTCTCATAACCTAGGCTTCAGAAATTTCGGA GATTTTATATTCAAAGTAAGAATCAAAGAGCTATTATAGTTTCTATGAAT CCTGATCCCCCCCAAAGAAATAAACGAACTATATATTAGTGGTGTTTTAA GGCATATGAAGTTCTACAAGCCAATGATCCAAATCTCAAATAATTTGACC GTGAAAAACCTGCGAAAACGATCGAACTATACTTAATCTCAGATAATCAA TAATGTCGCATAAACAAACATAAACAAAGATATTACATGTAAAATACCAA CTCTATTTATTCTACTAGGATACTGATATGAAATCAAGTGAATTCCAAAG ACCGATGAAAATGCGAAGTCAAACAGTAATGACACCAAAGACAGAATATT CTTTTGAGAATCAATCATATTCTTCTGATTGTCAAGATGAGGTTGAGAAC AAACATAGAACATTTTCAATAAAAGAGGAAATTGAAGATCCAGAGAACGT AGAGGAAGAACTTTCTCAAAGTGAAGCAAAAACAATGGAATAATATTCAC GCCAACTGCAAGGATGTGACTCCTTTTTTGCAAAGTAAAAGGTCCTATTG ATTAACATTATTCACACTTTTTAACGCCTTCACCTCATTGGCGAAATCAG TTTAATTTAAGGCAACTTTGAGCAATATCAAAGTTTCTATTGTGCGAATG CAACGCTAGTTTGTCTTTCATTAGTTACGAAATCTTTGTTATCCAAACTT TGAAACTAGGCCGTGGCCAGTGGATTGCTAAAGTTTCAAAAATAAAGAAA AAATTCAAAATGTCCGTGACCAACTTTTTGATATGTTTCTTAGTCAAGTT GAGGGTGCTGATTCCGAATTTGAATGTTACCAAGCTTGTAAACCCGCAGT TTTTTGAGCAAAAAAATGTATTACATTAAATTCTCAACTTTTATATTTCA TTTGAAATCTGAATTTTTAGATCTTACAATTTTGCCTGAAAACCCAAAAA TCGCAAATTACGCAAAAACTGCGGGTTTACAAGCTTGGTAACATTCAAAT TCGGAATCAGCACCTTCAAATTGACTAGGAAACATATCAAAAAGTTGGTC CAAACCAGGGCAGGAACTGTTCAAGCTTTGAGCATTATGTTAACGGAGGT GTCGAGAGCGCTTTTTGTTTATAAGCCCTGGTTAAAAGCAAACCACCTCA GTGCCATAGCCACTTTGAAAAAGGTGTAAATTTCGTCAATATTTGATTTA TTTGCTTTAATCTCTTCCCTCTTTTTACCACTTTTACGTTGAGCCGACGT GTGCCACAGAACGAAATAACTAACTAACGCACTAACTATGTAAGAAGATA GTCTTATGATTTGAAAATATACTAATATGCACGCGATTTCTACTTGCCTT TTGCTGAAAATTGACTTTCGGAGAGGCAGTTTTAGAAAAATCTTGAATTT TTTGAATTTTTTCTTTATTTTTGAAACTTTAACAATCCACTGTCCACGGC CTACTTTAAAGGAAATTGTTGAGCATACTTTCTTTCTATACATTTCATTA ATCTATAACTTGTCTTTTACTATATTAATCTTGTACATAAGGGATGTAAC ATTTAAATATCCTCATCAATTATTATCTTCAAAAAATACTCCAGTTCTCG TGGAATCAGAATCAAATTCTGAATGCTCCAACTCAGGAAGAAGATCTGCT TCAATTTATCAGAGAAAATATTAATTAAAATCCTAT

Coding sequence (CDS) from alignment at scaffold_21:169681..173716-

>TCONS_00052090 ID=TCONS_00052090|Name=TCONS_00052090|organism=Clytia hemisphaerica|type=CDS|length=4620bp|location=Sequence derived from alignment at scaffold_21:169681..173716- (Clytia hemisphaerica)
GATACTGATATGAAATCAAGTGAATTCCAAAGACCGATGAAAATGCGAAG
TCAAACAGTAATGACACCAAAGACAGAATATTCTTTTGAGAATCAATCAT
ATTCTTCTGATTGTCAAGATGAGGTTGAGAACAAACATAGAACATTTTCA
ATAAAAGAGGAAATTGAAGATCCAGAGAACGTAGAGGAAGAACTTTCTCA
AAGTGAAGCAAAAACAATGGAATAAATGCGGAGAAAGACAGCTGCAGGCA
TTGTCACTGTTAAACAAGGTGGTAGACCAAAGAGATTATCACTACCTGAT
CAGATTCCACGTAAAGCGAGTACAGCATTTGGACCGAAGAAAATTTCAGG
CGAGGTGCAATGAACGATGCGAAGGTATTGAGTGCGAATTACATGTTCGT
TTTTACTGGTGGTACATTCATCCTTGGAAGTATTTTCATGAACTTTGCAC
GCGTGTTACGAAACCGTGAGAAATATGTTGTTGAGGACAAAACACCATTT
GATGAAGAAGTTACTGAACTTGCTGAAATAAGACCAAGAGCTGCAGCTTC
CATTATCAAATATGCTATTTCACTGGGCATCAGTGGCTCAACAGCCAGTC
TCATGTTAACAGCTTGGTCAGCAAGCAATCTATTTGGTCGTCTAGCCTTT
GGAAGCTTTATATCCCGTTATCGCGATAAAGTCCTCATCACATATCAAAT
AGCGATGTTTCTAAGCGGAGTGGTCAGCATTGGAGCTTATTTTGCCGACA
ATACATGGAGTTTGTTTCTCTATTGTTGTATTTATGGAATGTTGGATGGT
TCGAATATTGGATTAGCCAGTCTGGTGACGATTGATTTGACAAGTCCACT
TGATTTAGGAGCAGCTTGGGGTATACAACAAACGATCAATGGAATTCCAA
CCATTGCTGGTCCTGTTCTGATTGGATACTGATATGAAATCAAGTGAATT
CCAAAGACCGATGAAAATGCGAAGTCAAACAGTAATGACACCAAAGACAG
AATATTCTTTTGAGAATCAATCATATTCTTCTGATTGTCAAGATGAGGTT
GAGAACAAACATAGAACATTTTCAATAAAAGAGGAAATTGAAGATCCAGA
GAACGTAGAGGAAGAACTTTCTCAAAGTGAAGCAAAAACAATGGAATAAA
TGCGGAGAAAGACAGCTGCAGGCATTGTCACTGTTAAACAAGGTGGTAGA
CCAAAGAGATTATCACTACCTGATCAGATTCCACGTAAAGCGAGTACAGC
ATTTGGACCGAAGAAAATTTCAGGCGAGGTGCAATGAACGATGCGAAGGT
ATTGAGTGCGAATTACATGTTCGTTTTTACTGGTGGTACATTCATCCTTG
GAAGTATTTTCATGAACTTTGCACGCGTGTTACGAAACCGTGAGAAATAT
GTTGTTGAGGACAAAACACCATTTGATGAAGAAGTTACTGAACTTGCTGA
AATAAGACCAAGAGCTGCAGCTTCCATTATCAAATATGCTATTTCACTGG
GCATCAGTGGCTCAACAGCCAGTCTCATGTTAACAGCTTGGTCAGCAAGC
AATCTATTTGGTCGTCTAGCCTTTGGAAGCTTTATATCCCGTTATCGCGA
TAAAGTCCTCATCACATATCAAATAGCGATGTTTCTAAGCGGAGTGGTCA
GCATTGGAGCTTATTTTGCCGACAATACATGGAGTTTGTTTCTCTATTGT
TGTATTTATGGAATGTTGGATGGTTCGAATATTGGATTAGCCAGTCTGGT
GACGATTGATTTGACAAGTCCACTTGATTTAGGAGCAGCTTGGGGTATAC
AACAAACGATCAATGGAATTCCAACCATTGCTGGTCCTGTTCTGATTGGA
TACTGATATGAAATCAAGTGAATTCCAAAGACCGATGAAAATGCGAAGTC
AAACAGTAATGACACCAAAGACAGAATATTCTTTTGAGAATCAATCATAT
TCTTCTGATTGTCAAGATGAGGTTGAGAACAAACATAGAACATTTTCAAT
AAAAGAGGAAATTGAAGATCCAGAGAACGTAGAGGAAGAACTTTCTCAAA
GTGAAGCAAAAACAATGGAATAAATGCGGAGAAAGACAGCTGCAGGCATT
GTCACTGTTAAACAAGGTGGTAGACCAAAGAGATTATCACTACCTGATCA
GATTCCACGTAAAGCGAGTACAGCATTTGGACCGAAGAAAATTTCAGGCG
AGGTGCAATGAACGATGCGAAGGTATTGAGTGCGAATTACATGTTCGTTT
TTACTGGTGGTACATTCATCCTTGGAAGTATTTTCATGAACTTTGCACGC
GTGTTACGAAACCGTGAGAAATATGTTGTTGAGGACAAAACACCATTTGA
TGAAGAAGTTACTGAACTTGCTGAAATAAGACCAAGAGCTGCAGCTTCCA
TTATCAAATATGCTATTTCACTGGGCATCAGTGGCTCAACAGCCAGTCTC
ATGTTAACAGCTTGGTCAGCAAGCAATCTATTTGGTCGTCTAGCCTTTGG
AAGCTTTATATCCCGTTATCGCGATAAAGTCCTCATCACATATCAAATAG
CGATGTTTCTAAGCGGAGTGGTCAGCATTGGAGCTTATTTTGCCGACAAT
ACATGGAGTTTGTTTCTCTATTGTTGTATTTATGGAATGTTGGATGGTTC
GAATATTGGATTAGCCAGTCTGGTGACGATTGATTTGACAAGTCCACTTG
ATTTAGGAGCAGCTTGGGGTATACAACAAACGATCAATGGAATTCCAACC
ATTGCTGGTCCTGTTCTGATTGGATACTGATATGAAATCAAGTGAATTCC
AAAGACCGATGAAAATGCGAAGTCAAACAGTAATGACACCAAAGACAGAA
TATTCTTTTGAGAATCAATCATATTCTTCTGATTGTCAAGATGAGGTTGA
GAACAAACATAGAACATTTTCAATAAAAGAGGAAATTGAAGATCCAGAGA
ACGTAGAGGAAGAACTTTCTCAAAGTGAAGCAAAAACAATGGAATAAATG
CGGAGAAAGACAGCTGCAGGCATTGTCACTGTTAAACAAGGTGGTAGACC
AAAGAGATTATCACTACCTGATCAGATTCCACGTAAAGCGAGTACAGCAT
TTGGACCGAAGAAAATTTCAGGCGAGGTGCAATGAACGATGCGAAGGTAT
TGAGTGCGAATTACATGTTCGTTTTTACTGGTGGTACATTCATCCTTGGA
AGTATTTTCATGAACTTTGCACGCGTGTTACGAAACCGTGAGAAATATGT
TGTTGAGGACAAAACACCATTTGATGAAGAAGTTACTGAACTTGCTGAAA
TAAGACCAAGAGCTGCAGCTTCCATTATCAAATATGCTATTTCACTGGGC
ATCAGTGGCTCAACAGCCAGTCTCATGTTAACAGCTTGGTCAGCAAGCAA
TCTATTTGGTCGTCTAGCCTTTGGAAGCTTTATATCCCGTTATCGCGATA
AAGTCCTCATCACATATCAAATAGCGATGTTTCTAAGCGGAGTGGTCAGC
ATTGGAGCTTATTTTGCCGACAATACATGGAGTTTGTTTCTCTATTGTTG
TATTTATGGAATGTTGGATGGTTCGAATATTGGATTAGCCAGTCTGGTGA
CGATTGATTTGACAAGTCCACTTGATTTAGGAGCAGCTTGGGGTATACAA
CAAACGATCAATGGAATTCCAACCATTGCTGGTCCTGTTCTGATTGGATA
CTGATATGAAATCAAGTGAATTCCAAAGACCGATGAAAATGCGAAGTCAA
ACAGTAATGACACCAAAGACAGAATATTCTTTTGAGAATCAATCATATTC
TTCTGATTGTCAAGATGAGGTTGAGAACAAACATAGAACATTTTCAATAA
AAGAGGAAATTGAAGATCCAGAGAACGTAGAGGAAGAACTTTCTCAAAGT
GAAGCAAAAACAATGGAATAAATGCGGAGAAAGACAGCTGCAGGCATTGT
CACTGTTAAACAAGGTGGTAGACCAAAGAGATTATCACTACCTGATCAGA
TTCCACGTAAAGCGAGTACAGCATTTGGACCGAAGAAAATTTCAGGCGAG
GTGCAATGAACGATGCGAAGGTATTGAGTGCGAATTACATGTTCGTTTTT
ACTGGTGGTACATTCATCCTTGGAAGTATTTTCATGAACTTTGCACGCGT
GTTACGAAACCGTGAGAAATATGTTGTTGAGGACAAAACACCATTTGATG
AAGAAGTTACTGAACTTGCTGAAATAAGACCAAGAGCTGCAGCTTCCATT
ATCAAATATGCTATTTCACTGGGCATCAGTGGCTCAACAGCCAGTCTCAT
GTTAACAGCTTGGTCAGCAAGCAATCTATTTGGTCGTCTAGCCTTTGGAA
GCTTTATATCCCGTTATCGCGATAAAGTCCTCATCACATATCAAATAGCG
ATGTTTCTAAGCGGAGTGGTCAGCATTGGAGCTTATTTTGCCGACAATAC
ATGGAGTTTGTTTCTCTATTGTTGTATTTATGGAATGTTGGATGGTTCGA
ATATTGGATTAGCCAGTCTGGTGACGATTGATTTGACAAGTCCACTTGAT
TTAGGAGCAGCTTGGGGTATACAACAAACGATCAATGGAATTCCAACCAT
TGCTGGTCCTGTTCTGATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032990XLOC_032990Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052090-exon-scaffold_21-1575043694:173346..173716TCONS_00052090-exon-scaffold_21-1575043694:173346..173716Clytia hemisphaericaexon
TCONS_00052090-exon-scaffold_21-1575043694:172534..172733TCONS_00052090-exon-scaffold_21-1575043694:172534..172733Clytia hemisphaericaexon
TCONS_00052090-exon-scaffold_21-1575043694:171894..171944TCONS_00052090-exon-scaffold_21-1575043694:171894..171944Clytia hemisphaericaexon
TCONS_00052090-exon-scaffold_21-1575043694:171483..171560TCONS_00052090-exon-scaffold_21-1575043694:171483..171560Clytia hemisphaericaexon
TCONS_00052090-exon-scaffold_21-1575043694:169681..171098TCONS_00052090-exon-scaffold_21-1575043694:169681..171098Clytia hemisphaericaexon
TCONS_00052090-exon-scaffold_21-1510915933:173346..173716TCONS_00052090-exon-scaffold_21-1510915933:173346..173716Clytia hemisphaericaexon
TCONS_00052090-exon-scaffold_21-1510915933:172534..172733TCONS_00052090-exon-scaffold_21-1510915933:172534..172733Clytia hemisphaericaexon
TCONS_00052090-exon-scaffold_21-1510915933:171894..171944TCONS_00052090-exon-scaffold_21-1510915933:171894..171944Clytia hemisphaericaexon
TCONS_00052090-exon-scaffold_21-1510915933:171483..171560TCONS_00052090-exon-scaffold_21-1510915933:171483..171560Clytia hemisphaericaexon
TCONS_00052090-exon-scaffold_21-1510915933:169681..171098TCONS_00052090-exon-scaffold_21-1510915933:169681..171098Clytia hemisphaericaexon
TCONS_00052090-exon-scaffold_21-1491911889:173346..173716TCONS_00052090-exon-scaffold_21-1491911889:173346..173716Clytia hemisphaericaexon
TCONS_00052090-exon-scaffold_21-1491911889:172534..172733TCONS_00052090-exon-scaffold_21-1491911889:172534..172733Clytia hemisphaericaexon
TCONS_00052090-exon-scaffold_21-1491911889:171894..171944TCONS_00052090-exon-scaffold_21-1491911889:171894..171944Clytia hemisphaericaexon
TCONS_00052090-exon-scaffold_21-1491911889:171483..171560TCONS_00052090-exon-scaffold_21-1491911889:171483..171560Clytia hemisphaericaexon
TCONS_00052090-exon-scaffold_21-1491911889:169681..171098TCONS_00052090-exon-scaffold_21-1491911889:169681..171098Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052090-proteinTCONS_00052090-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:169681..173716 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0565438 0.16589 0.231725 0.473281 0.476182 0.217909 0.670009 0.482471 0.187929 0.278952 0.221064 0.174787 0.371094 0.501044 0.551831 0.666071 2.44046 2.81031 0.951462 0.785571 4.17639 8.07051 0.426172 0.391439 0.894598 0.642614 0.445587 0.411911 0.0838384 0.0637714
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052090 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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