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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052087 ID=TCONS_00052087|Name=TCONS_00052087|organism=Clytia hemisphaerica|type=transcript|length=1782bp
aaaaaatataacatttagaatccgaaaaataagaaaatggtATTCAAATT
CAAAGAGCCAATTGTGGACAAAGGATTATGTTGGTTAATGTTAGCTATGG
TCTTTACCATATACTTCGTTCTGATTGGGACATTTTTTTCCTATGGTGTT
TGGCTGCCAAGAGTTATGGAAGAATTTAATTGTAATCAAGAACAAGCTGC
CTGGGTTGCTTCGATTGCAACTGGTCTACTTGTACTATTGGCACTACCTT
CAGACCTGGCATGTCATTACTTTGGTGTATTCAACATGTCAATATGCGGA
TCATTGTTGTGTGGCATTGGCATGATCATATCATCTTATCTCCAGAACAT
TTATCATCTCTATTTATCATTTGGGGTTTTGATGGGGATTGGCTCCTCAT
TATTGTATACACCAACCTTGGTGATGATGGGTAGATGGTTCCACAAATAT
CAAGCTCTGTCAACAACTATTGTAATGGTTGGAGCACCATCAGGATCTTT
AGTATTCAATATCATCACAGAGAAAATCATGCAGAATTTCAAACTACGTT
CGGTTATGGTTGTCTATGGGATATGTTTGATGTGTATTACACTTGTCTGT
TCGTTCGGATATATGCCGTTTAGTCCAACTTTCATAGAAAAGAGGTCAAA
TATTGAGAACAAAGAAGAGGCAAAAGGACAAGACTCATTGGAAATTGGCA
GTGGATTTGAATTCAGAGCGTCGCTGTTAAAGAATGAAGCATATTGGCTT
TACAATGTATCTCGATTCTTCTCAGTTCTCGCCCACTACGTTCCAATGTT
TCACCTTATCAAATATGCGATGACGATGGGGATTAGTAGTTCAACAGCCA
GTATCATGTTAGCTGTTTGGTCTGGAAGTAATTTCATTGGTCGATTAGGA
TTTGGTATTTTTGCTTCCAAATACCGCTCAAAGGTCCCTATCACCTATCA
GATAGTGCTATTTATGACGAGCTTGGTGTGCGCTGCGGCCTTTTTCGCTG
AAACCGCCTGGAGTCTTTTCCTCTATTGCTTCATATATGGGGTATGCGAG
GGCGCTATAGTTGGTATAGCCAGTATTCTAACCATTGATTTAACTTGTTT
ACGAGATTTGGGAGCAGCTTGGGGTATACAACAAACTATCAATGGCATTC
CAACCATTGCTGGCCCTGTTCTGATTGGTGCAATGAACGATGCCAATTTG
TTccgtccaaatttcatgtttatctTTACCGGTGGTACGTTTCTTGTCAG
TACTGTATTCATGCATTTAGCAAGAACTATTCACAATAGAAGAAATAAAA
TATCTaaagaagaagaacatcaaTCACAAATCGAATGAAATTGCGTAAGT
ATTCCCTTGTTCGGTAGAGGTGCATTTCTAttcaattttagtgaaatttc
atgaggaaaatatatttttttaaatcctaaAGAAAACTGATAATCCAAGT
TCGGATTCGAAGGGAAGTATCGACGTACTGAAGATTGAACCTCCTCAAAA
GGTGGTATAGGATTATTTCAGTACAAGAAAACAAATACATTGACAAAGAT
TTTATAAGGAACACTCGTAAACCTATCAACATTCTGCAATATTTGAACTT
TTGCACCTATTATCTTTAGGATAAGCAAGAACATCAACGAATAAGAACTC
AGAAAACAAAACCAGCTGATTCCTTGCTGAGAAAAAggcccaatttttta
tttttttaatagtAAAATATAGTAAAACATAGTAACTTTTTGAATATCTT
AACTTGTTATTCACTGAAAAAGCATAataaaa Run BLAST on NCBI transcript from alignment at scaffold_21:158097..163545- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052087 ID=TCONS_00052087|Name=TCONS_00052087|organism=Clytia hemisphaerica|type=transcript|length=5449bp|location=Sequence derived from alignment at scaffold_21:158097..163545- (Clytia hemisphaerica)
AAAAAATATAACATTTAGAATCCGAAAAATAAGAAAATGGTATTCAAATT
CAAAGAGCCAATTGTGGACAAAGGATTATGTTGGTTAATGTTAGCTATGG
TCTTTACCATATACTTCGTTCTGATTGGGACATTTTTTTCCTATGGTGTT
TGGCTGCCAAGAGTTATGGAAGAATTTAATTGTAATCAAGAACAAGCTGG
TAAGAATGATATCTCTTTATTGTTAGAAAGATATTTCAGATATTTGGTCT
ATAAAGTAAGTAGTAAGTTTGTGAGCGCAGTCGAGGGCGAAGGCTCCCTT
TTCTCTAGCTGTCTACGCAAATCTAGGGGAGGGTGCTACTCCTTCCCTTG
TATTACTCCACTTACCTTTGATCCGTCTCCTTAATTGTTGAACATCAAGC
AGAGAGGCATCACGAGTACTACTTTGGGAATCTTTGGTATGACCCGGCTG
GGGGTTGAACCCAATGAAGTATAAGCCCGAAGGGCTAGAAGTCAATCTCT
TTGGTAGGATTTGAAGCCAACAAATCCTACCAAAGTTGCGCGGCCTTGAG
CCTCCCGCCTGGTTTTTACACAAATGATTGAAACTAAAATTTACCGCTTA
ATTTCGAAAAATATATCACTCAAAAACAAAGGAATTGCTAGATTCAATCC
GTCATCAAAAATACGGCGCATATTTTAAGGCTTCAATTTTTCTTGTCTGA
GAAAGGTTAGAGATTGACCTCTAGCCCTTCGGGCTTGAAACTCAATGGTT
GAACCCACAACCTTGCACACCGTAGCTCAACCTTCATGCTACGGCCGCTA
GCATGAAAGATATAAAGGTTATTCAAAAATCTTAAGCAAAATCCACCCCC
TCCTTTATAGATGTCCCTCCTTTGTAGATGCACTTTCTCTTTAATGCACT
CATCTTTTTAGAAATCTAACCCTCCTTGGATGAACTAGCGTAAATCTGTG
AAGGGTTCAGTAATTTAAAACCACAGTTTCCATAATAATTAATAAACGCA
ACTGGAAAATCCTCAGTTTAGTATAATCACCATTTGTCATTAAAGTTGAG
AGGCATTCTTAGTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNAAAATGTTTTTGAAAGTTCCCTTTTTTGTCTTAATTCTG
CTGTATTAGCCTCCTTTTCAAACATTTTCCACCCAGGACATTTTTATTCC
AAACCCCCCGCTTATTAAATTTTGAGATTTTTTTCAACCCCCCGGCTATT
AGGTACCCGAGAGTACAAGATTACTTCCATTTTACAATTAATTTATGTGG
TAAGGATAGCACTTAGTCAGTCAATTTCTATTTCTACATCCTCGCAAGAG
CCCCCATAGATATCATGCATATCTTTGAAAAATTCCAAATCACGCATCAC
GACTCAAATCACGATCACGTTTTGACCCCTGATCACGCAAAAAAATTCCA
AATCACGTAATCACGCTAGAAAAGAGTCCCTAACACGTCATCACGCAAAC
GGCTTGGGGGGCCTTTCGCAACACAAGAAAGGGTTGGATTAGCAAAAGAA
AATCCTTATACTTAGCTGACCTTTCAAAATGAAAGTCCTAAATTTTCTAA
GATAAAGAAATTCATTCATTTTATTAAGCTTTCACTGAAAGATTTTAAAG
CTGCTATTTTACGTTTGTAAAAAGTGTGAACATACCATGCAGGGGGCGGG
GTACAGAGGCAGGGTACTAACCCATAGGGTACTAACTTGATTTTTTACGA
AAATTTTGTTTAGTACCACCCACCCATATTTAGTACCGGGTACTACTTCA
TTTTTGCTGTAAAAAATAGAGACACCAACCCTAAAATCTTAAATTTTACA
GATTAGACCAAGAGAGGGGTACTATTGTTCGTTTTTCAGACTGAAAATTG
ACAGATAATTCAAGCAAACTATCAATGATGGAGTCAGAAGCTTTTGTCCT
TTGATTTTCATCGCACACTTCTTAACCATTTTGGAAGTTTTGTCTTCAAA
AAAATCAAAAAATTTCTCAAAAGAGTAAAAAGAATTGTCGATTAAAAAAG
ATTTCAAATAAAAAAAATCAATATTTGGAAAAAGTCAAAATATTTCAACA
AACTACTTTTTTTATTGAAAAACAGCAAAATTCTGTGAAAAAGTACCCAA
ATAGTATCCTGTACTTGCTTGAAGAGTGAAAAATATACACCCCCACCCCC
AAAGTAGTACCGGGTACTAACTTTTTTGAAATGCAAAAATAGACACCACC
ACCTGGCTATGGGTCAGTACCCTGTGTCTGTAACCCCACCCTGTACCATG
AGGTTTCAAAGAATATTAAAGCTAACAAGTGACTTATATGGACATACCTG
ACATATCAACAGAAAACATGAAATTTATAATAAACAAGACGTCAAACAAT
CTCGGAAAACCACTTTTTATTACCGGATCGGTCGACCGGAAAAAATGTTT
TTCTTGTTATCATGAAAATTTGACCCCATTACATTTTGGAATTACTATTT
TGCTTCATTGTGCAAAAAATCTACATAATCCTATTAGCTAATATCGAGAA
AAGCTAATAACGAACGAATGAACGAACAAGCACTGGTTAATTTATTGGTA
GGTCCAAAAACTATTTCAAAATCAGACAGAAGATTTCCATACGGATTAGC
GATACAACCCTGTATATCATCAACCTCAACCAAGTGTAACAGTGAACTCT
CCAGAAAATACAATGACTCTCTCGACAATTTGGCAAGGGATAAGAATTTT
CTTTAAATTAGAGAAGGTTCGAATTACAGAGAGTAATTCAAACCACTTTC
CACCTGAGGGGACCAATTTTTTAGTTCGAGTTACAGAAATACTTAAATAA
TAGAGTTTCGAATTAGAGAGGGTAATCCTACAATTAGAAAAGAAGATCTG
ATGTAAGTCTAACTCTCTTTATTAACCCAAGTAAAAATTCTGTATGTAGA
CTTTGAGTATCAGTGCACCAATAAGCCAAAACAAAACAACAAGCCTGTAA
ACCTTTGTGTTCAATTTTTAGCCTGGGTTGCTTCGATTGCAACTGGTCTA
CTTGTACTATTGGCACTACCTTCAGACCTGGCATGTCATTACTTTGGTGT
ATTCAACATGTCAATATGCGGATCATTGTTGTGTGGCATTGGCATGATCA
TATCATCTTATCTCCAGAACATTTATCATCTCTATTTATCATTTGGGGTT
TTGATGGGGATTGGCTCCTCATTATTGTATACACCAACCTTGGTGATGAT
GGGTAGATGGTTCCACAAATATCAAGCTCTGTCAACAACTATTGTAATGG
TTGGAGCACCATCAGGATCTTTAGTATTCAATATCATCACAGAGAAAATC
ATGCAGAATTTCAAACTACGTTCGGTTATGGTTGTCTATGGGATATGTTT
GATGTGTATTACACTTGTCTGTTCGTTCGGATATATGCCGTTTAGTCCAA
CTTTCATAGAAAAGAGGTCAAATATTGAGAACAAAGAAGAGGCAAAAGGA
CAAGACTCATTGGAAATTGGCAGTGGATTTGAATTCAGAGCGTCGCTGTT
AAAGAATGAAGCATATTGGCTTTACAATGTATCTCGATTCTTCTCAGTTC
TCGCCCACTACGTTCCAATGTTTCACCTTGTAAGTTTTTAACACAATTTT
TCTACAGTGAAATTCCCATAACTCCAACACGCAGATAGGCCACATTTCCA
ACGGGATTGTTTTATTTAAAGGCTTGTATGGGATATATAGTAATGGGCCA
GTGTTAGTAATCCTCTATACAAGTTGAAAAAGATAAGTAAGCGTCAAAAT
AAGGTTAGCAAAAATGTATTTATTTAAAAGTTTTATTTTAATTTGGTTAC
ATATCCTTTTTAGGTTTTCCAAAATATTGATTCAGGGTTTTATCTGCGAT
TTCCTCTAAAATTTAACCTTGAAAATTATTTACTTTCACTTTAAGATCAA
ATATGCGATGACGATGGGGATTAGTAGTTCAACAGCCAGTATCATGTTAG
CTGTTTGGTCTGGAAGTAATTTCATTGGTCGATTAGGATTTGGTATTTTT
GCTTCCAAATACCGCTCAAAGGTCCCTATCACCTATCAGATAGTGCTATT
TATGACGAGCTTGGTGTGCGCTGCGGCCTTTTTCGCTGAAACCGCCTGGA
GTCTTTTCCTCTATTGCTTCATATATGGGGTATGCGAGGGCGCTATAGTT
GGTATAGCCAGTATTCTAACCATTGATTTAACTTGTTTACGAGATTTGGG
AGCAGCTTGGGGTATACAACAAACTATCAATGGCATTCCAACCATTGCTG
GCCCTGTTCTGATTGGTAAGTGATTGTGTTATTATACTGTGTTGTGCGAA
GTGAGAAGGGGTTGTGGGTAGTAGGTTTTTGAGGTGATTGGGTATGCCTG
AGCTAAAAAATCGAAAATTGACTCTTTAAGAGAAATAAAATAGAACCTTA
GTGTGCTTAAGTATGACTTTCTGAGAGATTTTTCTCAAAGTTTGTTTAAC
AATAAATCTTGGTCTAAAAATTACTGAAATCGTAGCCAGAGTGTCAGGCA
TGATGTATAACCTCCGTTCAACAGGTTTTCGCTACACCTATATAAACATG
AATAAATACCATAACACATATTTTTCATTCTCTCAAGAACTTTATATCAA
AGACCACATACGGCATTAATAAAATATTTTTCTCTTTTAAATAGGTGCAA
TGAACGATGCCAATTTGTTCCGTCCAAATTTCATGTTTATCTTTACCGGT
GGTACGTTTCTTGTCAGTACTGTATTCATGCATTTAGCAAGAACTATTCA
CAATAGAAGAAATAAAATATCTAAAGAAGAAGAACATCAATCACAAATCG
AATGAAATTGCGTAAGTATTCCCTTGTTCGGTAGAGGTGCATTTCTATTC
AATTTTAGTGAAATTTCATGAGGAAAATATATTTTTTTAAATCCTAAAGA
AAACTGATAATCCAAGTTCGGATTCGAAGGGAAGTATCGACGTACTGAAG
ATTGAACCTCCTCAAAAGGTGGTATAGGATTATTTCAGTACAAGAAAACA
AATACATTGACAAAGATTTTATAAGGAACACTCGTAAACCTATCAACATT
CTGCAATATTTGAACTTTTGCACCTATTATCTTTAGGATAAGCAAGAACA
TCAACGAATAAGAACTCAGAAAACAAAACCAGCTGATTCCTTGCTGAGAA
AAAGGCCCAATTTTTTATTTTTTTAATAGTAAAATATAGTAAAACATAGT
AACTTTTTGAATATCTTAACTTGTTATTCACTGAAAAAGCATAATAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052087-exon-scaffold_21-1575043694:163347..163545 | TCONS_00052087-exon-scaffold_21-1575043694:163347..163545 | Clytia hemisphaerica | exon |
| TCONS_00052087-exon-scaffold_21-1575043694:159767..160374 | TCONS_00052087-exon-scaffold_21-1575043694:159767..160374 | Clytia hemisphaerica | exon |
| TCONS_00052087-exon-scaffold_21-1575043694:159081..159450 | TCONS_00052087-exon-scaffold_21-1575043694:159081..159450 | Clytia hemisphaerica | exon |
| TCONS_00052087-exon-scaffold_21-1575043694:158097..158701 | TCONS_00052087-exon-scaffold_21-1575043694:158097..158701 | Clytia hemisphaerica | exon |
| TCONS_00052087-exon-scaffold_21-1510915933:163347..163545 | TCONS_00052087-exon-scaffold_21-1510915933:163347..163545 | Clytia hemisphaerica | exon |
| TCONS_00052087-exon-scaffold_21-1510915933:159767..160374 | TCONS_00052087-exon-scaffold_21-1510915933:159767..160374 | Clytia hemisphaerica | exon |
| TCONS_00052087-exon-scaffold_21-1510915933:159081..159450 | TCONS_00052087-exon-scaffold_21-1510915933:159081..159450 | Clytia hemisphaerica | exon |
| TCONS_00052087-exon-scaffold_21-1510915933:158097..158701 | TCONS_00052087-exon-scaffold_21-1510915933:158097..158701 | Clytia hemisphaerica | exon |
| TCONS_00052087-exon-scaffold_21-1491911889:163347..163545 | TCONS_00052087-exon-scaffold_21-1491911889:163347..163545 | Clytia hemisphaerica | exon |
| TCONS_00052087-exon-scaffold_21-1491911889:159767..160374 | TCONS_00052087-exon-scaffold_21-1491911889:159767..160374 | Clytia hemisphaerica | exon |
| TCONS_00052087-exon-scaffold_21-1491911889:159081..159450 | TCONS_00052087-exon-scaffold_21-1491911889:159081..159450 | Clytia hemisphaerica | exon |
| TCONS_00052087-exon-scaffold_21-1491911889:158097..158701 | TCONS_00052087-exon-scaffold_21-1491911889:158097..158701 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_21 | supercontig | scaffold_21:158097..163545 - |
Blast
BLAST of TCONS_00052087 vs. Swiss-Prot (Human)
Match: MOT2 (Monocarboxylate transporter 2 OS=Homo sapiens GN=SLC16A7 PE=1 SV=2) HSP 1 Score: 105.145 bits (261), Expect = 7.278e-24 Identity = 95/441 (21.54%), Postives = 187/441 (42.40%), Query Frame = 1
Query: 67 DKGLCWLMLAMVFTIYFVLIGTFFSYG------VWLPRVMEEFNCNQEQAAWVASIATGXXXXXXXXXXXACHYFGVFNMSICGSLLCGIGMIISSYLQNIYHLYLSFGVLMGIGSSLLYTPTLVMMGRWFHKYQALSTTIVMVGAPSGSLVFNIITEKIMQNFKLRSVMVVYGICLMCITLVCSFGYMPFSPTFIEKRSNIENKEEAKGQDS------------LEIGSGFEFRASLLKNEAYWLYNVSRFFSVLAHYVPMFHLIKYAMTMGISSSTASIMLAVWSGSNFIGRLGFGIFA-SKY-RSKVPITYQIVLFMTSLVCAAAFFAETAWSLFLYCFIYGVCEGAIVGIASILTIDLTCLRDLGAAWGIQQTINGIPTIAGPVLIGAMNDANLFRPNFMFIFTGGTFLVSTVFMHLARTIHNRRNKISKEEEHQSQ 1329
D G W+++ F I FSY V+ + + F+ + AW++SI ++ S + + +G + I G LLC +GM+++S+ ++ LYL+ G + G+G + P L ++G++F++ + ++ + M G+P + + F + ++ G L+ + S P P + S +NK DS ++ +F SL K+ + +Y L + P+ L YA GI +A+ +L+V + + R G+ A SKY R ++ + + + A+ SL LY +G+ G++ + +DL +A G+ + P + GP L G + D +M++ G + ++V++ + I+ R ++EE+ Q
Sbjct: 15 DGGWGWIVVGAAF------ISIGFSYAFPKAVTVFFKEIQQIFHTTYSEIAWISSIMLAVMYAGGPVSSVLVNKYGSRPVVIAGGLLCCLGMVLASFSSSVVQLYLTMGFITGLGLAFNLQPALTIIGKYFYRKRPMANGLAMAGSPVFLSSLAPFNQYLFNTFGWKGSFLILGSLLLNACVAGSL-MRPLGPN--QTTSKSKNKTGKTEDDSSPKKIKTKKSTWEKVNKYLDF--SLFKHRGFLIYLSGNVIMFLGFFAPIIFLAPYAKDQGIDEYSAAFLLSVMAFVDMFARPSVGLIANSKYIRPRIQYFFSFAIMFNGVCHLLCPLAQDYTSLVLYAVFFGLGFGSVSSVLFETLMDLVGAPRFSSAVGLVTIVECGPVLLGPPLAGKLVDLT-GEYKYMYMSCGAIVVAASVWLLIGNAINYRLLAKERKEENARQ 443
The following BLAST results are available for this feature:
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