TCONS_00052084 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052084
Unique NameTCONS_00052084
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length946

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052084 ID=TCONS_00052084|Name=TCONS_00052084|organism=Clytia hemisphaerica|type=transcript|length=946bp
TTCATCCGCGATAGTGAAACATCAAAAAATACCATAGAAAGAACTTAAAG
ATTGAATAAGATTTGAAGCGAGAAATATTGAAATCAAAATGAGGGTTTTG
TGTGTAATTTTGATATTGGAATCTTATATCATTGGAGTAGTTCTTGCAAA
TACCGGGGCTAGATTCACCgatacaaaaaataacaaaaagattGCCGCCG
GTGAAGACGATAAATATGTCAGTTTGAAAGGTTTAACGGAAGTGCAATGT
GTTGGTCATTGCACATTAACTGATGATTGCCATTCTGTGAATCACCATAG
TGATGACCAGATCTGTCTGGTGATTGATGAACCATTGGAAGGTGATTCTC
ATTTGATTGATGCTCATGgatggaaatatttcaagaagaCAAGAATAACA
AAAGAGGATGAAATCTCAACAAAGAATAACTTTGAAATAACAAATGCGTT
CAAACCAAACCCAAACAAGATCGTCAACTTTCTACCTTACCTAAAAGAAG
AATGGGAATTAACTTTCAATATCATAATCTATGGaaaatcagatcaaaac
aaaagtgGAATTTTCACAATGGCAAAAGAATTAACTGCTCAAAATAAATT
GTTAAACATTTATGTTATCACTTCCACCGATCAAAAGATTCGAGTTTACA
CAAAAGAGATGTCTTATTCTTTCAAGTTTGAATACAACAAATGGCATACT
ATCAAATTTACCCAACGTTCAAGTCCGATAAATGATCCGCTACAAACCCA
CGTAAGATCTCTGGTCGTTGATGGTATGTACGTCAACAAAATGCTTATCA
AACTACCAGAAGTCTCGGAGAACTTGATTTGTTTTGCTGGTTCACCTCAT
CACCTTGCGTTGAACGGTCGCGTCCGAAATTTGACGTTTAAACAAGATGG
CCTTCCGCATCGAAACATTCGACCAAAGCATAACTACATCTCAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_21:109483..111950-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052084 ID=TCONS_00052084|Name=TCONS_00052084|organism=Clytia hemisphaerica|type=transcript|length=2468bp|location=Sequence derived from alignment at scaffold_21:109483..111950- (Clytia hemisphaerica)
TTCATCCGCGATAGTGAAACATCAAAAAATACCATAGAAAGAACTTAAAG
ATTGAATAAGATTTGAAGCGAGAAATATTGAAATCAAAATGAGGGTTTTG
TGTGTAATTTTGATATTGGAATCTTATATCATTGGAGTAGTTCTTGCAAA
TACCGGGGCTAGATTCACCGATACAAAAAATAACAAAAAGATTGCCGCCG
GTGAAGACGATAAATATGTCAGTTTGAAAGGTTTAACGGAAGTGCAATGT
GTTGGTCATTGCACATTAACTGATGATTGCCATTCTGTGAATCACCATAG
TGATGACCAGATCTGTCTGGTGATTGATGAACCATTGGAAGGTGATTCTC
ATTTGATTGATGCTCATGGATGGAAATATTTCAAGAAGACAAGAATAACA
AAAGAGGTATAGCTGATACTTTTTATGCTATAGTCAAATACAAATTACCA
ACTAAAACTAAAACCAAAGCCAACTGTTTTTTTTTGCCGAAAATAGTTTA
CAGCCGGTAGAGTTTACCAGTCTTCTTCGGGACTCTACTGTTGATTTTTT
CAGTATACCGCTATTACGGCTGTGAACTCTGCGCATATAATATTCTCCCG
ACTTTACTATCCCTGTAAACATCGTCTACTATTATTTTAATATCATGGGA
CTTTGGAAACTATTCTCCTTCTTGAAATTGAATGAAGGGGAAATGATTTT
GGGAGGTTTGAAATATTAAAGTCCCCAGCGCTTACTTCCCTTTCTCTTAT
CAAAGAGACCCGGAGTGCTGGGTATGTGCGGACGGAGAGTTGCAAAAATT
AGAAAATTTTTAGTTTTAAAGAAAGAATTGTGAAAAATCCCACCTATGGA
TAGGACGTTTTTCAAAAATAGAAGAGAATTTTCTAAGGGTCATTTTTTCA
CTAGGATTTGGTCTCTCCTAAGCCTTTTCCTTAGTTATAGGAGGTCAAAG
AGACGAATATGACCAAATCATCGATTCTCAATGCTCTTAAAGTCTTAAAT
GAAATCTTTTTTTGATTCAGGATGAAATCTCAACAAAGAATAACTTTGAA
ATAACAAATGGTAAGTCTACTGAATAAACTATGAGCATCTTAAATCTGTG
TTACTATCCTCCTTTCTTAAGCTTTTGAAGCAATATTTCTTAGGTTACGT
GTATACCAAAATTGTAATTCCGTTTCAAACATTTTTGACTACATTGAGAA
TCTCCTATCCCGAGAGTCGCACTTCTACTTATCACACTTGTTCGGCAGAT
AGTTGGTCAATGTGCATTATTCACTTGACTGTAAGTAACATTAGAGCTCG
ACTTAAGTTTACGCTAAGATAATTAAATTTTCTTCATTAGCGTTCAAACC
AAACCCAAACAAGATCGTCAACTTTCTACCTTACCTAAAAGAAGAATGGG
AATTAACTTTCAATATCATAATCTATGGAAAATCAGATCAAAACAAAAGT
GGAATTTTCACAATGGCAAAAGAATTAACTGCTCAAAATAAATTGTTAAA
CATTTATGTTATCACTTCCACCGATCAAAAGATTCGAGTTTACACAAAAG
AGATGTCTTATTCTTTCAAGTTTGAATACAACAAATGGCATACTATCAAA
TTTACCCAACGTTCAAGTCCGATAAATGATCCGCTACAAACCCACGTAAG
ATCTCTGGTCGTTGATGGTATGTACGTCAACAAAATGCTTATCAAACTAC
CAGAAGTCTCGGAGAACTTGATTTGTTTTGCTGGTTCACCTCATCACCTT
GCGTTGAACGGTCGCGTCCGAAATTTGACGTTTAAACAAGATGGCCTTCC
GCATCGTAAGATTCTTTGTTTTTATTGGATGTTGAGAAATTTAGAATTGA
ACCAAAACCCCCTATAATACAACTTTTCGACCGTAGCCACCAATTGCCGC
GCGGGCATTTTTTGTCCGCTTTATCTCACTAAAACCGTCCCAGTCCTTTT
TTCGCACCTATAGACGATAGAAAAATGTGTCAAAAAAGGATTGGATCGAT
TTTAGGGGGTAATTAAATAATTTAGTGGCACGCGTCTGACCGCGCGACTA
CGGTCGAAAAGGTGTATCAATCAAGTATTTTACTTAGATTTTAAGAAGTT
AATTTATATATAAATACTTAATAAATGACTAAATGACTTTTTTAATAGAG
AGCACGTTTTTGATTCCTGCGAGTTTGGTCTATGTAATCTTAAGTAGAAG
TGTAGCCGCATAACTTGTAATCACTCAAAATTGTTCGTTATAAGAAAACT
TTGATTGCATGGTCAGGTGTATGTATAAAGGCTCTTTATTATTTTTTTAA
TTTATGTGTTGGTAAGTTTCACAAACTTTAGTGGCTTCAGAAAGATTTTA
GCTTCCAAGATTTTAAGCCTAAAGGACATTCTTTCACAACAATCCCTGTA
AAAATAATAATTTCTTTATTTTATTGTTTCTAGGAAACATTCGACCAAAG
CATAACTACATCTCAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032988XLOC_032988Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052084-exon-scaffold_21-1575043694:111545..111950TCONS_00052084-exon-scaffold_21-1575043694:111545..111950Clytia hemisphaericaexon
TCONS_00052084-exon-scaffold_21-1575043694:110891..110930TCONS_00052084-exon-scaffold_21-1575043694:110891..110930Clytia hemisphaericaexon
TCONS_00052084-exon-scaffold_21-1575043694:110146..110610TCONS_00052084-exon-scaffold_21-1575043694:110146..110610Clytia hemisphaericaexon
TCONS_00052084-exon-scaffold_21-1575043694:109483..109517TCONS_00052084-exon-scaffold_21-1575043694:109483..109517Clytia hemisphaericaexon
TCONS_00052084-exon-scaffold_21-1510915933:111545..111950TCONS_00052084-exon-scaffold_21-1510915933:111545..111950Clytia hemisphaericaexon
TCONS_00052084-exon-scaffold_21-1510915933:110891..110930TCONS_00052084-exon-scaffold_21-1510915933:110891..110930Clytia hemisphaericaexon
TCONS_00052084-exon-scaffold_21-1510915933:110146..110610TCONS_00052084-exon-scaffold_21-1510915933:110146..110610Clytia hemisphaericaexon
TCONS_00052084-exon-scaffold_21-1510915933:109483..109517TCONS_00052084-exon-scaffold_21-1510915933:109483..109517Clytia hemisphaericaexon
TCONS_00052084-exon-scaffold_21-1491911889:111545..111950TCONS_00052084-exon-scaffold_21-1491911889:111545..111950Clytia hemisphaericaexon
TCONS_00052084-exon-scaffold_21-1491911889:110891..110930TCONS_00052084-exon-scaffold_21-1491911889:110891..110930Clytia hemisphaericaexon
TCONS_00052084-exon-scaffold_21-1491911889:110146..110610TCONS_00052084-exon-scaffold_21-1491911889:110146..110610Clytia hemisphaericaexon
TCONS_00052084-exon-scaffold_21-1491911889:109483..109517TCONS_00052084-exon-scaffold_21-1491911889:109483..109517Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:109483..111950 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.123778	0	0.179689	0.00696558	0	0.00941145	0	0	0	0	0	0	0	0	2.19418	0.0259886	0.201497	2.27955	0	0	0	0.160688	0.0534295	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052084 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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