Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052070 ID=TCONS_00052070|Name=TCONS_00052070|organism=Clytia hemisphaerica|type=transcript|length=1540bpRun BLAST on NCBI protein sequence of TCONS_00052070-protein >TCONS_00052070-protein ID=TCONS_00052070-protein|Name=TCONS_00052070-protein|organism=Clytia hemisphaerica|type=polypeptide|length=478bp MSRKVKPRQRFHSLSTSLPDVDGNKGFELPFNCLSSFDPTDEFDENGESKRun BLAST on NCBI transcript from alignment at scaffold_21:115220..123816+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052070 ID=TCONS_00052070|Name=TCONS_00052070|organism=Clytia hemisphaerica|type=transcript|length=8597bp|location=Sequence derived from alignment at scaffold_21:115220..123816+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_21:115220..123816+ >TCONS_00052070 ID=TCONS_00052070|Name=TCONS_00052070|organism=Clytia hemisphaerica|type=CDS|length=12906bp|location=Sequence derived from alignment at scaffold_21:115220..123816+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00052070 vs. Swiss-Prot (Human)
Match: CNBD2 (Cyclic nucleotide-binding domain-containing protein 2 OS=Homo sapiens GN=CNBD2 PE=2 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 1.429e-17 Identity = 58/208 (27.88%), Postives = 110/208 (52.88%), Query Frame = 3 Query: 552 PWKRSEKDIKFIYKALDGLTLFKKFSPIIKRELAKSLNFECFEDGRIIIQQGHPGISLYFVVKGSVAVQVATTDKANGNVYKQIVNEIMAGGS-FGEMALMSGMNRAATVICIGTSEFLRIDKGD-FREVLMRSFQKEWERKTLFMKDCILFKEWTFKEIRGAGAASSIKEYQNNKVIVKDLSTHKGTVYVVMF---GTCLVVSKINV 1160 P R+E +I+ + L L ++ ++ ++ LAK + FE F R+II++G G S YF+ G+VA+ T D+ + + +++ GS FGEM ++ R +T++C+ +EFL +D+ D F L + QK+ + + F + LF W+ +++ A + I+ + ++I KD G +MF G+C V+ +++ Sbjct: 96 PSWRTEDEIQAVCNILQVLDSYRNYAEPLQLLLAKVMRFERFGRRRVIIKKGQKGNSFYFIYLGTVAI---TKDEDGSSAFLDPHPKLLHKGSCFGEMDVLHASVRRSTIVCMEETEFLVVDREDFFANKLDQEVQKDAQYRFEFFRKMELFASWSDEKLWQLVAMAKIERFSYGQLISKDF----GESPFIMFISKGSCEVLRLLDL 296 The following BLAST results are available for this feature:
BLAST of TCONS_00052070 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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