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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052068 ID=TCONS_00052068|Name=TCONS_00052068|organism=Clytia hemisphaerica|type=transcript|length=1464bp
ACTTCTCCTTTCAGGGTTCATCTTGAGTGCGCTTTCGTTCATGATTGCAC
CGAACATTTATTACCATGAAATTTCTGCGGGTCTTCTCATCTTCGGAGCT
GGGCTGGaagGTATAGCATGGGCGGGTTTTGGCGTCAACCATTTAGATAT
TGCACCCCAATATGCCGCCATTTTGATTGGGATAACGAACACGTGTGCGA
CGGTGCCGAACATTATCGTTCCAATTGTTGTTGGAATCATCAGTAAAACT
GGAGAGCGGAGTGACTGGATGCTGGTCTTTTACATCTCTGGATTAACACT
CATTGTGGGTACATCATTTTATATTGTTTTTGGTTCTGGTGAAGTGCAAC
CGTGGGCAGGTGGCGTGGAAAACGAGGAGGGCGAAAAGGAAAGCTTGTTG
AATGACTTTAGTACTAAAGAGGATATGGATGAAATAGAAAATGATAATGA
AACCAAAGATGttgcaaatgaaaacaaaatcgaTAAAGAATCATAGAGAT
AATTAACTAATCATAGTATATTATTTCTTCAATTTTGGATCAGTAGGGTC
TGCAATGTCAGCTTACATACAATAAAAATATCTTCATAATAGATTTCAAC
TTAAAAAAGAACCTAAAACCAGATTATCAATCGAATCACCAACTTTGAAA
TTTGACGTTCAGATTGCTTTTAGGTCTTTGCTCATAATTAGAAGAGATTG
AAatttaaataatttccaaaattccAAAGATCATCTGATTTACAATAATC
GTTCATTACCAGACCTTTAGCCCCAAATGCTAGAAAAATTCCGtcagtat
tttttaaaataaatagtTGCATGTTTGTAAATAGattctttataaaaatt
taGTTAAGATTAGATACCGCTTTTTAAATTGAAAgataatcaaaatcaaa
aaaaatatcttaaCCCGTTTATTCTTTCCAATGTCAAACAGCACGTACga
tgaaaaaaagattaaaaaaaaaatttgtttcctTGTATTTGGACCAagct
tttacatttttcaattttcttaacctttaccacgccgaggccgtaaattt
acgtttTAAGCGATAGCCGCaggccgtaaatatacgtttttcgtGCGGTT
ttaagaaaagccgccctaccACCTTAAAGACGCTTTTATatcccgggaaa
tgtcttatatgacggagagaaatgtaaacaaactattttcaatagtttga
aaccacccactttcgattttaactgtcaaaacaaactggaaaatcaggca
aaatattctttgGGAAATTATGAGCTCATGGACTGCTGTgactaactttt
tatgtttatttagtggaaaatggtttgttttattggttggaaatgttatg
tattgcttTTTTGCagtttagtcagtgtttgaggtaagtttctgcctcct
tattctttagtatgacggtacattaagggtgaggactggaggcttgtcgg
ccgtcatCAACCGT Run BLAST on NCBI protein sequence of TCONS_00052068-protein >TCONS_00052068-protein ID=TCONS_00052068-protein|Name=TCONS_00052068-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
LLLSGFILSALSFMIAPNIYYHEISAGLLIFGAGLEGIAWAGFGVNHLDI
APQYAAILIGITNTCATVPNIIVPIVVGIISKTGERSDWMLVFYISGLTL
IVGTSFYIVFGSGEVQPWAGGVENEEGEKESLLNDFSTKEDMDEIENDNE
TKDVANENKIDKES Run BLAST on NCBI transcript from alignment at scaffold_21:21638..26856+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052068 ID=TCONS_00052068|Name=TCONS_00052068|organism=Clytia hemisphaerica|type=transcript|length=5219bp|location=Sequence derived from alignment at scaffold_21:21638..26856+ (Clytia hemisphaerica)
ACTTCTCCTTTCAGGGTTCATCTTGAGTGCGCTTTCGTTCATGATTGCAC
CGAACATTTATTACCATGAAATTTCTGCGGGTCTTCTCATCTTCGGAGCT
GGGCTGGaaggtaaaaattgaaaataaattcaattaCATCAAAGCTTATT
AGTTTGTATacaagaaataaaattttatcatccCTCCCAAAAAACTCTAC
ATCTACCATTTTAAAATAGTAGTGTATTTTGACAAAcgctttttttgaga
aaaaaagattgTTAATAATAATgccttgttggaaagataacttTGAATGC
TTCGATTAAGGCATTTAATTTGTTCAAAAAGCATTTTGTATTTTCTAAAA
CTGCATCGACCTTTATCACatttaatcttaatttttgaatAGTTTGAAGA
GATTTTAAAGCTTCAAATTCGTCCATTCAAAGTTTATCTttctatcaaaa
tcaaaacgtaTCGAGTGTCAATTGGTCTTACATTATGTTATGTTTAAACA
TGTAGGTATAGCATGGGCGGGTTTTGGCGTCAACCATTTAGATATTGCAC
CCCAATATGCCGCCATTTTGATTGGGATAACGAACACGTGTGCGACGGTG
CCGAACATTATCGTTCCAATTGTTGTTGGAATCATCAGTAAAACTGGAGT
AAGAATTCATTCtttgtttgaatttcttttatgttcactgaaaaattaaa
taaaaaaatgagcGTTGTATCAAGACAAAATTGTTAAACTTTTATAACTA
CTCCAAACTAATCCGACCTGAtgtaaaattcaaatcaaatttaaagAGCG
AGCTACTTAGAAAGGGGTTTCATGCCTTATGACACGCTAAGTATCAAAAC
TCTACCCACTGCACTAGAAGGATTGCTCAAAAATTCTCTCCCAAGAAAAC
TCTAAAAATCTCACTGGAAGTCTCACTCCAACagtgctataggcggccac
tagtgacccccaccgggaattgcttattaataggtttaaacataatagac
taccctgagtatcagaggttaagttttcaaagaaaatagtaacctctgaa
gacaaataatagaaattttatcgcgcatgtgtcaatctaatcactgtaNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNagaagaatgaagaagagaattacaaacaaaatt
ggtgaatttatttttgtttaatctcttataaataacacaacttATAATAA
CTAcaacattcgaaaacaatagaatgtcttcatttctctcaagattaaag
ataggggaaaatgcgcgaaattttttaccccccttgttgtgcgcagattt
gtaatacttgcgcagatttgtaatacctgcgcagatttgtaatactttct
gcgtagatttgtaatacctgcgcagatttgtaataaactttgcgcaaatt
tgtaatacttgagctgcgcagaaatgtaatacttctctgcgcagatttat
aatttggaatttagatttttacttcGGCATATGTTTCCCACgaagaaaag
tttcgaaaaaaagacttaaaaaataatcagaaaatcacACAAAGGTTGTA
TATCTTTAGTATgaacattaactttataagaaacgaatcaatatatttta
atctaatgaaaattggcttttggcaNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAATCAATATCTTtcaat
ctaatggaaattggctttcggcagttggttctttcaatacaaacatggga
ttttgaatacaatttcaatattttcattttttctataagcattcaacttt
ataagaaacgaatcaatatcttttaatctaatggaaattgTTTCAatcat
gttttattttttttcatctttatgtattttttctatctaacaacaacaaa
aaacataccGAAGCTTCAACCATCAAactctttttgaaagaaagttaaCT
CATAATAATTTCACTTGAGATATCATGCTGGAATGTAATGTAGGTGCTAT
GAAAGGTTATAAAAGAAATTCAGTCAGAGGGGACAGGTTTCCTAGCTAGG
TAAAAGGTGGTTTTAGAGCAAATCAATGTTTTCTTATCATATCATCTTAT
AAATTGTTCATCAACTTTGGTACTGCCTcttgaaatgataaaatgttgac
aaaaatatttttatatcattaattattttttcataacaaagtgcttataa
aaataaatatgttcgtGTTATTATTCGAACCTTGCtcacttcgaaataaa
caattaccgacaagaaataattttcattttacgagttattgattagtttc
ttataaaagcagtgcttacaaaaaataaatatgttcgtGTTATTATTCGT
ACCTTGTtcacttcgaaataaacaattaccgacaagaaataattttcatt
ttacgagttattgattagttttttataaaagcagttctttTAATGTTCGT
GCTATTCTCATAAACAATTTATATATTACcagataaatttcttataaaag
cactgcttagaaaagaaatattaattgattatttatttattcgATGTGCT
CAATAAACACAACTTTATTTGGGTATtattttctaagtattttttaatGT
ATTTTGTTCACAGAAAAGAATTTGTTtaccaatgaaaatatcaattccaa
attacaaatctgcgcagagaagtattacatttctgcgcagctcaagtatt
acaaatttgcgcaaagtttatNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNcatagggttaagcatagtcgaggctcaaaattgag
ctttgcttaagcatagtgagcttcagccgaaatttaccgtatgcttataa
aacgaaatgagtgtatatgattttgagctgtgcttttcacggtcataata
gacaacattcacaaaatatgtttatcaatagagattttaaataaaagaat
gtttaaaacacagctgattggcttaggtttcgaaactttcgattgtttca
ttaaaacctcagtgcgcatgcgatttatctggagaatttcaatattcaaa
acaagagcagtgctcatagcccgaagagtaggagttttacgctcgaaacg
aaggaggatatgacgtagcctaagaaaaatactgattcttttttatgttt
aattttAGGAGCGGAGTGACTGGATGCTGGTCTTTTACATCTCTGGATTA
ACACTCATTGTGGGTACATCATTTTATATTGTTTTTGGTTCTGGTGAAGT
GCAACCGTGGGCAGGTGGCGTGGAAAACGAGGAGGGCGAAAAGGAAAGCT
TGTTGAATGACTTTAGTACTAAAGAGGATATGGATGAAATAGAAAATGAT
AATGAAACCAAAGATGttgcaaatgaaaacaaaatcgaTAAAGAATCATA
GAGATAATTAACTAATCATAGTATATTATTTCTTCAATTTTGGATCAGTA
GGGTCTGCAATGTCAGCTTACATACAATAAAAATATCTTCATAATAGATT
TCAACTTAAAAAAGAACCTAAAACCAGATTATCAATCGAATCACCAACTT
TGAAATTTGACGTTCAGATTGCTTTTAGGTCTTTGCTCATAATTAGAAGA
GATTGAAatttaaataatttccaaaattccAAAGATCATCTGATTTACAA
TAATCGTTCATTACCAGACCTTTAGCCCCAAATGCTAGAAAAATTCCGtc
agtattttttaaaataaatagtTGCATGTTTGTAAATAGattctttataa
aaatttaGTTAAGATTAGATACCGCTTTTTAAATTGAAAgataatcaaaa
tcaaaaaaaatatcttaaCCCGTTTATTCTTTCCAATGTCAAACAGCACG
TACgatgaaaaaaagattaaaaaaaaaatttgtttcctTGTATTTGGACC
Aagcttttacatttttcaattttcttaacctttaccacgccgaggccgta
aatttacgtttTAAGCGATAGCCGCaggccgtaaatatacgtttttcgtG
CGGTTttaagaaaagccgccctaccACCTTAAAGACGCTTTTATatcccg
ggaaatgtcttatatgacggagagaaatgtaaacaaactattttcaatag
tttgaaaccacccactttcgattttaactgtcaaaacaaactggaaaatc
aggcaaaatattctttgGGAAATTATGAGCTCATGGACTGCTGTgactaa
ctttttatgtttatttagtggaaaatggtttgttttattggttggaaatg
ttatgtattgcttTTTTGCagtttagtcagtgtttgaggtaagtttctgc
ctccttattctttagtatgacggtacattaagggtgaggactggaggctt
gtcggccgtcatCAACCGT Coding sequence (CDS) from alignment at scaffold_21:21638..26856+ >TCONS_00052068 ID=TCONS_00052068|Name=TCONS_00052068|organism=Clytia hemisphaerica|type=CDS|length=1485bp|location=Sequence derived from alignment at scaffold_21:21638..26856+ (Clytia hemisphaerica)
CTTCTCCTTTCAGGGTTCATCTTGAGTGCGCTTTCGTTCATGATTGCACC
GAACATTTATTACCATGAAATTTCTGCGGGTCTTCTCATCTTCGGAGCTG
GGCTGGaagGTATAGCATGGGCGGGTTTTGGCGTCAACCATTTAGATATT
GCACCCCAATATGCCGCCATTTTGATTGGGATAACGAACACGTGTGCGAC
GGTGCCGAACATTATCGTTCCAATTGTTGTTGGAATCATCAGTAAAACTG
GAGAGCGGAGTGACTGGATGCTGGTCTTTTACATCTCTGGATTAACACTC
ATTGTGGGTACATCATTTTATATTGTTTTTGGTTCTGGTGAAGTGCAACC
GTGGGCAGGTGGCGTGGAAAACGAGGAGGGCGAAAAGGAAAGCTTGTTGA
ATGACTTTAGTACTAAAGAGGATATGGATGAAATAGAAAATGATAATGAA
ACCAAAGATGttgcaaatgaaaacaaaatcgaTAAAGAATCATAGCTTCT
CCTTTCAGGGTTCATCTTGAGTGCGCTTTCGTTCATGATTGCACCGAACA
TTTATTACCATGAAATTTCTGCGGGTCTTCTCATCTTCGGAGCTGGGCTG
GaagGTATAGCATGGGCGGGTTTTGGCGTCAACCATTTAGATATTGCACC
CCAATATGCCGCCATTTTGATTGGGATAACGAACACGTGTGCGACGGTGC
CGAACATTATCGTTCCAATTGTTGTTGGAATCATCAGTAAAACTGGAGAG
CGGAGTGACTGGATGCTGGTCTTTTACATCTCTGGATTAACACTCATTGT
GGGTACATCATTTTATATTGTTTTTGGTTCTGGTGAAGTGCAACCGTGGG
CAGGTGGCGTGGAAAACGAGGAGGGCGAAAAGGAAAGCTTGTTGAATGAC
TTTAGTACTAAAGAGGATATGGATGAAATAGAAAATGATAATGAAACCAA
AGATGttgcaaatgaaaacaaaatcgaTAAAGAATCATAGCTTCTCCTTT
CAGGGTTCATCTTGAGTGCGCTTTCGTTCATGATTGCACCGAACATTTAT
TACCATGAAATTTCTGCGGGTCTTCTCATCTTCGGAGCTGGGCTGGaagG
TATAGCATGGGCGGGTTTTGGCGTCAACCATTTAGATATTGCACCCCAAT
ATGCCGCCATTTTGATTGGGATAACGAACACGTGTGCGACGGTGCCGAAC
ATTATCGTTCCAATTGTTGTTGGAATCATCAGTAAAACTGGAGAGCGGAG
TGACTGGATGCTGGTCTTTTACATCTCTGGATTAACACTCATTGTGGGTA
CATCATTTTATATTGTTTTTGGTTCTGGTGAAGTGCAACCGTGGGCAGGT
GGCGTGGAAAACGAGGAGGGCGAAAAGGAAAGCTTGTTGAATGACTTTAG
TACTAAAGAGGATATGGATGAAATAGAAAATGATAATGAAACCAAAGATG
ttgcaaatgaaaacaaaatcgaTAAAGAATCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052068-exon-scaffold_21-1491911889:21638..21747 | TCONS_00052068-exon-scaffold_21-1491911889:21638..21747 | Clytia hemisphaerica | exon |
| TCONS_00052068-exon-scaffold_21-1510915933:21638..21747 | TCONS_00052068-exon-scaffold_21-1510915933:21638..21747 | Clytia hemisphaerica | exon |
| TCONS_00052068-exon-scaffold_21-1575043694:21638..21747 | TCONS_00052068-exon-scaffold_21-1575043694:21638..21747 | Clytia hemisphaerica | exon |
| TCONS_00052068-exon-scaffold_21-1491911889:22143..22285 | TCONS_00052068-exon-scaffold_21-1491911889:22143..22285 | Clytia hemisphaerica | exon |
| TCONS_00052068-exon-scaffold_21-1510915933:22143..22285 | TCONS_00052068-exon-scaffold_21-1510915933:22143..22285 | Clytia hemisphaerica | exon |
| TCONS_00052068-exon-scaffold_21-1575043694:22143..22285 | TCONS_00052068-exon-scaffold_21-1575043694:22143..22285 | Clytia hemisphaerica | exon |
| TCONS_00052068-exon-scaffold_21-1491911889:25646..26856 | TCONS_00052068-exon-scaffold_21-1491911889:25646..26856 | Clytia hemisphaerica | exon |
| TCONS_00052068-exon-scaffold_21-1510915933:25646..26856 | TCONS_00052068-exon-scaffold_21-1510915933:25646..26856 | Clytia hemisphaerica | exon |
| TCONS_00052068-exon-scaffold_21-1575043694:25646..26856 | TCONS_00052068-exon-scaffold_21-1575043694:25646..26856 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_21 | supercontig | scaffold_21:21638..26856 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR020846 | MFS_dom |
Blast
BLAST of TCONS_00052068 vs. Swiss-Prot (Human)
Match: VGLU2 (Vesicular glutamate transporter 2 OS=Homo sapiens GN=SLC17A6 PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.336e-18 Identity = 59/157 (37.58%), Postives = 87/157 (55.41%), Query Frame = 2
Query: 14 GFILSALSFMIAPNIYYHEISAGLLIFGAGLEGIAWAGFGVNHLDIAPQYAAILIGITNTCATXXXXXXXXXXXXXSKTGERSDWMLVFYISGLTLIVGTSFYIVFGSGEVQPWAGGVENEEGEKESLLNDFSTKEDMDEIENDNETKDVANENKID 484
GF + A ++ + ++ L+ G G A +GF VNHLDIAP+YA+IL+GI+N T+ ++ PI+VG ++K R +W VF I+ L G FY +F SGE QPWA E E EK +++ DE+ D ET D+ +N I+
Sbjct: 392 GFGMEATLLLVVGYSHTRGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTKNKSREEWQYVFLIAALVHYGGVIFYAIFASGEKQPWADPEETSE-EKCGFIHE-------DEL--DEETGDI-TQNYIN 537
The following BLAST results are available for this feature:
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