TCONS_00052068 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052068
Unique NameTCONS_00052068
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1464

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052068 ID=TCONS_00052068|Name=TCONS_00052068|organism=Clytia hemisphaerica|type=transcript|length=1464bp
ACTTCTCCTTTCAGGGTTCATCTTGAGTGCGCTTTCGTTCATGATTGCAC
CGAACATTTATTACCATGAAATTTCTGCGGGTCTTCTCATCTTCGGAGCT
GGGCTGGaagGTATAGCATGGGCGGGTTTTGGCGTCAACCATTTAGATAT
TGCACCCCAATATGCCGCCATTTTGATTGGGATAACGAACACGTGTGCGA
CGGTGCCGAACATTATCGTTCCAATTGTTGTTGGAATCATCAGTAAAACT
GGAGAGCGGAGTGACTGGATGCTGGTCTTTTACATCTCTGGATTAACACT
CATTGTGGGTACATCATTTTATATTGTTTTTGGTTCTGGTGAAGTGCAAC
CGTGGGCAGGTGGCGTGGAAAACGAGGAGGGCGAAAAGGAAAGCTTGTTG
AATGACTTTAGTACTAAAGAGGATATGGATGAAATAGAAAATGATAATGA
AACCAAAGATGttgcaaatgaaaacaaaatcgaTAAAGAATCATAGAGAT
AATTAACTAATCATAGTATATTATTTCTTCAATTTTGGATCAGTAGGGTC
TGCAATGTCAGCTTACATACAATAAAAATATCTTCATAATAGATTTCAAC
TTAAAAAAGAACCTAAAACCAGATTATCAATCGAATCACCAACTTTGAAA
TTTGACGTTCAGATTGCTTTTAGGTCTTTGCTCATAATTAGAAGAGATTG
AAatttaaataatttccaaaattccAAAGATCATCTGATTTACAATAATC
GTTCATTACCAGACCTTTAGCCCCAAATGCTAGAAAAATTCCGtcagtat
tttttaaaataaatagtTGCATGTTTGTAAATAGattctttataaaaatt
taGTTAAGATTAGATACCGCTTTTTAAATTGAAAgataatcaaaatcaaa
aaaaatatcttaaCCCGTTTATTCTTTCCAATGTCAAACAGCACGTACga
tgaaaaaaagattaaaaaaaaaatttgtttcctTGTATTTGGACCAagct
tttacatttttcaattttcttaacctttaccacgccgaggccgtaaattt
acgtttTAAGCGATAGCCGCaggccgtaaatatacgtttttcgtGCGGTT
ttaagaaaagccgccctaccACCTTAAAGACGCTTTTATatcccgggaaa
tgtcttatatgacggagagaaatgtaaacaaactattttcaatagtttga
aaccacccactttcgattttaactgtcaaaacaaactggaaaatcaggca
aaatattctttgGGAAATTATGAGCTCATGGACTGCTGTgactaactttt
tatgtttatttagtggaaaatggtttgttttattggttggaaatgttatg
tattgcttTTTTGCagtttagtcagtgtttgaggtaagtttctgcctcct
tattctttagtatgacggtacattaagggtgaggactggaggcttgtcgg
ccgtcatCAACCGT
Run BLAST on NCBI

protein sequence of TCONS_00052068-protein

>TCONS_00052068-protein ID=TCONS_00052068-protein|Name=TCONS_00052068-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
LLLSGFILSALSFMIAPNIYYHEISAGLLIFGAGLEGIAWAGFGVNHLDI
APQYAAILIGITNTCATVPNIIVPIVVGIISKTGERSDWMLVFYISGLTL
IVGTSFYIVFGSGEVQPWAGGVENEEGEKESLLNDFSTKEDMDEIENDNE
TKDVANENKIDKES
Run BLAST on NCBI

transcript from alignment at scaffold_21:21638..26856+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052068 ID=TCONS_00052068|Name=TCONS_00052068|organism=Clytia hemisphaerica|type=transcript|length=5219bp|location=Sequence derived from alignment at scaffold_21:21638..26856+ (Clytia hemisphaerica)
ACTTCTCCTTTCAGGGTTCATCTTGAGTGCGCTTTCGTTCATGATTGCAC CGAACATTTATTACCATGAAATTTCTGCGGGTCTTCTCATCTTCGGAGCT GGGCTGGaaggtaaaaattgaaaataaattcaattaCATCAAAGCTTATT AGTTTGTATacaagaaataaaattttatcatccCTCCCAAAAAACTCTAC ATCTACCATTTTAAAATAGTAGTGTATTTTGACAAAcgctttttttgaga aaaaaagattgTTAATAATAATgccttgttggaaagataacttTGAATGC TTCGATTAAGGCATTTAATTTGTTCAAAAAGCATTTTGTATTTTCTAAAA CTGCATCGACCTTTATCACatttaatcttaatttttgaatAGTTTGAAGA GATTTTAAAGCTTCAAATTCGTCCATTCAAAGTTTATCTttctatcaaaa tcaaaacgtaTCGAGTGTCAATTGGTCTTACATTATGTTATGTTTAAACA TGTAGGTATAGCATGGGCGGGTTTTGGCGTCAACCATTTAGATATTGCAC CCCAATATGCCGCCATTTTGATTGGGATAACGAACACGTGTGCGACGGTG CCGAACATTATCGTTCCAATTGTTGTTGGAATCATCAGTAAAACTGGAGT AAGAATTCATTCtttgtttgaatttcttttatgttcactgaaaaattaaa taaaaaaatgagcGTTGTATCAAGACAAAATTGTTAAACTTTTATAACTA CTCCAAACTAATCCGACCTGAtgtaaaattcaaatcaaatttaaagAGCG AGCTACTTAGAAAGGGGTTTCATGCCTTATGACACGCTAAGTATCAAAAC TCTACCCACTGCACTAGAAGGATTGCTCAAAAATTCTCTCCCAAGAAAAC TCTAAAAATCTCACTGGAAGTCTCACTCCAACagtgctataggcggccac tagtgacccccaccgggaattgcttattaataggtttaaacataatagac taccctgagtatcagaggttaagttttcaaagaaaatagtaacctctgaa gacaaataatagaaattttatcgcgcatgtgtcaatctaatcactgtaNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNagaagaatgaagaagagaattacaaacaaaatt ggtgaatttatttttgtttaatctcttataaataacacaacttATAATAA CTAcaacattcgaaaacaatagaatgtcttcatttctctcaagattaaag ataggggaaaatgcgcgaaattttttaccccccttgttgtgcgcagattt gtaatacttgcgcagatttgtaatacctgcgcagatttgtaatactttct gcgtagatttgtaatacctgcgcagatttgtaataaactttgcgcaaatt tgtaatacttgagctgcgcagaaatgtaatacttctctgcgcagatttat aatttggaatttagatttttacttcGGCATATGTTTCCCACgaagaaaag tttcgaaaaaaagacttaaaaaataatcagaaaatcacACAAAGGTTGTA TATCTTTAGTATgaacattaactttataagaaacgaatcaatatatttta atctaatgaaaattggcttttggcaNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAATCAATATCTTtcaat ctaatggaaattggctttcggcagttggttctttcaatacaaacatggga ttttgaatacaatttcaatattttcattttttctataagcattcaacttt ataagaaacgaatcaatatcttttaatctaatggaaattgTTTCAatcat gttttattttttttcatctttatgtattttttctatctaacaacaacaaa aaacataccGAAGCTTCAACCATCAAactctttttgaaagaaagttaaCT CATAATAATTTCACTTGAGATATCATGCTGGAATGTAATGTAGGTGCTAT GAAAGGTTATAAAAGAAATTCAGTCAGAGGGGACAGGTTTCCTAGCTAGG TAAAAGGTGGTTTTAGAGCAAATCAATGTTTTCTTATCATATCATCTTAT AAATTGTTCATCAACTTTGGTACTGCCTcttgaaatgataaaatgttgac aaaaatatttttatatcattaattattttttcataacaaagtgcttataa aaataaatatgttcgtGTTATTATTCGAACCTTGCtcacttcgaaataaa caattaccgacaagaaataattttcattttacgagttattgattagtttc ttataaaagcagtgcttacaaaaaataaatatgttcgtGTTATTATTCGT ACCTTGTtcacttcgaaataaacaattaccgacaagaaataattttcatt ttacgagttattgattagttttttataaaagcagttctttTAATGTTCGT GCTATTCTCATAAACAATTTATATATTACcagataaatttcttataaaag cactgcttagaaaagaaatattaattgattatttatttattcgATGTGCT CAATAAACACAACTTTATTTGGGTATtattttctaagtattttttaatGT ATTTTGTTCACAGAAAAGAATTTGTTtaccaatgaaaatatcaattccaa attacaaatctgcgcagagaagtattacatttctgcgcagctcaagtatt acaaatttgcgcaaagtttatNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNcatagggttaagcatagtcgaggctcaaaattgag ctttgcttaagcatagtgagcttcagccgaaatttaccgtatgcttataa aacgaaatgagtgtatatgattttgagctgtgcttttcacggtcataata gacaacattcacaaaatatgtttatcaatagagattttaaataaaagaat gtttaaaacacagctgattggcttaggtttcgaaactttcgattgtttca ttaaaacctcagtgcgcatgcgatttatctggagaatttcaatattcaaa acaagagcagtgctcatagcccgaagagtaggagttttacgctcgaaacg aaggaggatatgacgtagcctaagaaaaatactgattcttttttatgttt aattttAGGAGCGGAGTGACTGGATGCTGGTCTTTTACATCTCTGGATTA ACACTCATTGTGGGTACATCATTTTATATTGTTTTTGGTTCTGGTGAAGT GCAACCGTGGGCAGGTGGCGTGGAAAACGAGGAGGGCGAAAAGGAAAGCT TGTTGAATGACTTTAGTACTAAAGAGGATATGGATGAAATAGAAAATGAT AATGAAACCAAAGATGttgcaaatgaaaacaaaatcgaTAAAGAATCATA GAGATAATTAACTAATCATAGTATATTATTTCTTCAATTTTGGATCAGTA GGGTCTGCAATGTCAGCTTACATACAATAAAAATATCTTCATAATAGATT TCAACTTAAAAAAGAACCTAAAACCAGATTATCAATCGAATCACCAACTT TGAAATTTGACGTTCAGATTGCTTTTAGGTCTTTGCTCATAATTAGAAGA GATTGAAatttaaataatttccaaaattccAAAGATCATCTGATTTACAA TAATCGTTCATTACCAGACCTTTAGCCCCAAATGCTAGAAAAATTCCGtc agtattttttaaaataaatagtTGCATGTTTGTAAATAGattctttataa aaatttaGTTAAGATTAGATACCGCTTTTTAAATTGAAAgataatcaaaa tcaaaaaaaatatcttaaCCCGTTTATTCTTTCCAATGTCAAACAGCACG TACgatgaaaaaaagattaaaaaaaaaatttgtttcctTGTATTTGGACC Aagcttttacatttttcaattttcttaacctttaccacgccgaggccgta aatttacgtttTAAGCGATAGCCGCaggccgtaaatatacgtttttcgtG CGGTTttaagaaaagccgccctaccACCTTAAAGACGCTTTTATatcccg ggaaatgtcttatatgacggagagaaatgtaaacaaactattttcaatag tttgaaaccacccactttcgattttaactgtcaaaacaaactggaaaatc aggcaaaatattctttgGGAAATTATGAGCTCATGGACTGCTGTgactaa ctttttatgtttatttagtggaaaatggtttgttttattggttggaaatg ttatgtattgcttTTTTGCagtttagtcagtgtttgaggtaagtttctgc ctccttattctttagtatgacggtacattaagggtgaggactggaggctt gtcggccgtcatCAACCGT

Coding sequence (CDS) from alignment at scaffold_21:21638..26856+

>TCONS_00052068 ID=TCONS_00052068|Name=TCONS_00052068|organism=Clytia hemisphaerica|type=CDS|length=1485bp|location=Sequence derived from alignment at scaffold_21:21638..26856+ (Clytia hemisphaerica)
CTTCTCCTTTCAGGGTTCATCTTGAGTGCGCTTTCGTTCATGATTGCACC
GAACATTTATTACCATGAAATTTCTGCGGGTCTTCTCATCTTCGGAGCTG
GGCTGGaagGTATAGCATGGGCGGGTTTTGGCGTCAACCATTTAGATATT
GCACCCCAATATGCCGCCATTTTGATTGGGATAACGAACACGTGTGCGAC
GGTGCCGAACATTATCGTTCCAATTGTTGTTGGAATCATCAGTAAAACTG
GAGAGCGGAGTGACTGGATGCTGGTCTTTTACATCTCTGGATTAACACTC
ATTGTGGGTACATCATTTTATATTGTTTTTGGTTCTGGTGAAGTGCAACC
GTGGGCAGGTGGCGTGGAAAACGAGGAGGGCGAAAAGGAAAGCTTGTTGA
ATGACTTTAGTACTAAAGAGGATATGGATGAAATAGAAAATGATAATGAA
ACCAAAGATGttgcaaatgaaaacaaaatcgaTAAAGAATCATAGCTTCT
CCTTTCAGGGTTCATCTTGAGTGCGCTTTCGTTCATGATTGCACCGAACA
TTTATTACCATGAAATTTCTGCGGGTCTTCTCATCTTCGGAGCTGGGCTG
GaagGTATAGCATGGGCGGGTTTTGGCGTCAACCATTTAGATATTGCACC
CCAATATGCCGCCATTTTGATTGGGATAACGAACACGTGTGCGACGGTGC
CGAACATTATCGTTCCAATTGTTGTTGGAATCATCAGTAAAACTGGAGAG
CGGAGTGACTGGATGCTGGTCTTTTACATCTCTGGATTAACACTCATTGT
GGGTACATCATTTTATATTGTTTTTGGTTCTGGTGAAGTGCAACCGTGGG
CAGGTGGCGTGGAAAACGAGGAGGGCGAAAAGGAAAGCTTGTTGAATGAC
TTTAGTACTAAAGAGGATATGGATGAAATAGAAAATGATAATGAAACCAA
AGATGttgcaaatgaaaacaaaatcgaTAAAGAATCATAGCTTCTCCTTT
CAGGGTTCATCTTGAGTGCGCTTTCGTTCATGATTGCACCGAACATTTAT
TACCATGAAATTTCTGCGGGTCTTCTCATCTTCGGAGCTGGGCTGGaagG
TATAGCATGGGCGGGTTTTGGCGTCAACCATTTAGATATTGCACCCCAAT
ATGCCGCCATTTTGATTGGGATAACGAACACGTGTGCGACGGTGCCGAAC
ATTATCGTTCCAATTGTTGTTGGAATCATCAGTAAAACTGGAGAGCGGAG
TGACTGGATGCTGGTCTTTTACATCTCTGGATTAACACTCATTGTGGGTA
CATCATTTTATATTGTTTTTGGTTCTGGTGAAGTGCAACCGTGGGCAGGT
GGCGTGGAAAACGAGGAGGGCGAAAAGGAAAGCTTGTTGAATGACTTTAG
TACTAAAGAGGATATGGATGAAATAGAAAATGATAATGAAACCAAAGATG
ttgcaaatgaaaacaaaatcgaTAAAGAATCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032976XLOC_032976Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052068-proteinTCONS_00052068-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052068-exon-scaffold_21-1491911889:21638..21747TCONS_00052068-exon-scaffold_21-1491911889:21638..21747Clytia hemisphaericaexon
TCONS_00052068-exon-scaffold_21-1510915933:21638..21747TCONS_00052068-exon-scaffold_21-1510915933:21638..21747Clytia hemisphaericaexon
TCONS_00052068-exon-scaffold_21-1575043694:21638..21747TCONS_00052068-exon-scaffold_21-1575043694:21638..21747Clytia hemisphaericaexon
TCONS_00052068-exon-scaffold_21-1491911889:22143..22285TCONS_00052068-exon-scaffold_21-1491911889:22143..22285Clytia hemisphaericaexon
TCONS_00052068-exon-scaffold_21-1510915933:22143..22285TCONS_00052068-exon-scaffold_21-1510915933:22143..22285Clytia hemisphaericaexon
TCONS_00052068-exon-scaffold_21-1575043694:22143..22285TCONS_00052068-exon-scaffold_21-1575043694:22143..22285Clytia hemisphaericaexon
TCONS_00052068-exon-scaffold_21-1491911889:25646..26856TCONS_00052068-exon-scaffold_21-1491911889:25646..26856Clytia hemisphaericaexon
TCONS_00052068-exon-scaffold_21-1510915933:25646..26856TCONS_00052068-exon-scaffold_21-1510915933:25646..26856Clytia hemisphaericaexon
TCONS_00052068-exon-scaffold_21-1575043694:25646..26856TCONS_00052068-exon-scaffold_21-1575043694:25646..26856Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:21638..26856 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.708833 0.328768 1.47062 1.30443 2.34246 1.29937 2.45425 2.43519 2.64743 1.97592 1.68638 2.7259 2.03217 1.93738 0.57522 1.31844 0.894628 1.01235 0.433356 1.15076 0.799701 0.966729 1.01422 0.66094 2.33277 2.52499 1.1091 0.968016 1.45118 0.960877
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
Blast
BLAST of TCONS_00052068 vs. Swiss-Prot (Human)
Match: VGLU2 (Vesicular glutamate transporter 2 OS=Homo sapiens GN=SLC17A6 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.336e-18
Identity = 59/157 (37.58%), Postives = 87/157 (55.41%), Query Frame = 2
Query:   14 GFILSALSFMIAPNIYYHEISAGLLIFGAGLEGIAWAGFGVNHLDIAPQYAAILIGITNTCATXXXXXXXXXXXXXSKTGERSDWMLVFYISGLTLIVGTSFYIVFGSGEVQPWAGGVENEEGEKESLLNDFSTKEDMDEIENDNETKDVANENKID 484
            GF + A   ++    +   ++   L+   G  G A +GF VNHLDIAP+YA+IL+GI+N   T+  ++ PI+VG ++K   R +W  VF I+ L    G  FY +F SGE QPWA   E  E EK   +++       DE+  D ET D+  +N I+
Sbjct:  392 GFGMEATLLLVVGYSHTRGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTKNKSREEWQYVFLIAALVHYGGVIFYAIFASGEKQPWADPEETSE-EKCGFIHE-------DEL--DEETGDI-TQNYIN 537          
The following BLAST results are available for this feature:
BLAST of TCONS_00052068 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VGLU23.336e-1837.58Vesicular glutamate transporter 2 OS=Homo sapiens ... [more]
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