TCONS_00052066 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052066
Unique NameTCONS_00052066
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1667

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052066 ID=TCONS_00052066|Name=TCONS_00052066|organism=Clytia hemisphaerica|type=transcript|length=1667bp
CAGGCATCATGGAAATGCCGCTATACAAATAAAGGTTAGGATTGTGATGT
GATTTTTAATTGTTGGAGATTCAGAAATCATTGGTGTATTTTGGGGTTAT
TATtattagattttaaatttttatccaATCTCAGTGGATAAANACAGATA
TTATTGGTGTATTTTGGGGTTATTATTATTAGATTGTAAATTTTCATCCA
ATCTCAGTggataaaatttttatcaagGATTCTAAATCAAACAACAGCCC
GAATAACAACCATACAATAAACTTCTACTGTTTAATAAATAGACATGGTA
AATCAGAGATATTATTGAGGATACGTAGAACTTGAGAAGTTTCCACATTG
TATGAGCAAGATGAGCGAAGAACAAAATGAACAACAGAAGACGCTATATC
ATCAGAAGGCTCACAACATAGAAGCTGAAACTCCTATGCCACTATCAGAT
AATCTGGAAGTTGATAAAAGAGTGACTGCAAATGGGTCTAAAAAACAGCC
TCTATACCATCAGAACTCTTTTGAGGATGGTGGATCTACGGCTAGTGATA
TTTTACATTTATACGGGAAGAAGAATACTGCTCGAGTAAAATTGAGTATA
AGTTACAGTGAGGGCGGGACGAGGAGTTATTTAGAACAACCGCCCTCCAT
CGAAGACTGTCTCGAAACGAATGATGATTTTCGATTTCAATCGAGGACTT
GCAAATGCTTACCAAAACGTTATGTGTTGGCTTTGTTGAGTTTCTTTGGG
TTTTTCAATGTTTATTGTTTACGTGTTGATTTGAGTGTGACGCTGGTTGC
CATGACATCAAATCATACACGAGTGAGGGCTGATGGGACGGAATATACGg
CGTTGGCTGAATTTCAATGGAACAGAGAACTTCAAGGTCATTTATTAGCA
GCATTTTATTATGGTTACATCATCACACAAATTCCTGGTGGTTATATAGC
CGCCCGTTTTGGCGGGAAAAATTTGTTCGGATTCGCCATCTTGATTAGTG
GCTTTTTGACGCTCCTGACACCGCTGGCGGCGAAAGAGCACTGGGTGTTA
TTGTTTGTGTTGCGGCTCGTCGAAGGACTTTGTGAGGGTTGCATTTACCC
GGCAATGTATTCGATATGGAGTCGTTGGGCGCCACCCATGGAAAGGGCGG
CTCTAGTTACCATACCTCATTCAGGATCGTATGCAGGATCGGTGGCAGGA
ACACTACTTGCTGGATACCTCTGTGAGGTTTGTGGATGGAGCTGGGTCTT
CTATTTCTTTGgtATTTTAGCATTAATTTGGGTAGTTGTATGGCAGATCC
TTGCATCAGATTCACCAGAAGACGATAACCATATATCAAATGTTGAACGA
AGAATGATTTTAGAAAGTTTGGAATCAGAGCACACTTCACAAAAGCTTTC
AGATGATCTTCCATGGTTTTCAATCTTCACTTCTTTACCTTTCATTTCAA
TTGCGGTGGCCCACACGTGCGAAGGATGGGCATTCGGTTTGATTCAAACA
TCCTTCCCCAAATATTTGAGTGAAGCTCTAAattatagaatttttaaaTC
CGGTCAATACACCAGCCTGATATATTTCCTGATGGGATTTTCAACATTCG
TCTCTGGTCAACTATCTTCATGTTTGAGAAGGCGAGGTGTTTCGGCAACA
GTTCTACGTAAAGTATT
Run BLAST on NCBI

protein sequence of TCONS_00052066-protein

>TCONS_00052066-protein ID=TCONS_00052066-protein|Name=TCONS_00052066-protein|organism=Clytia hemisphaerica|type=polypeptide|length=438bp
MSKMSEEQNEQQKTLYHQKAHNIEAETPMPLSDNLEVDKRVTANGSKKQP
LYHQNSFEDGGSTASDILHLYGKKNTARVKLSISYSEGGTRSYLEQPPSI
EDCLETNDDFRFQSRTCKCLPKRYVLALLSFFGFFNVYCLRVDLSVTLVA
MTSNHTRVRADGTEYTALAEFQWNRELQGHLLAAFYYGYIITQIPGGYIA
ARFGGKNLFGFAILISGFLTLLTPLAAKEHWVLLFVLRLVEGLCEGCIYP
AMYSIWSRWAPPMERAALVTIPHSGSYAGSVAGTLLAGYLCEVCGWSWVF
YFFGILALIWVVVWQILASDSPEDDNHISNVERRMILESLESEHTSQKLS
DDLPWFSIFTSLPFISIAVAHTCEGWAFGLIQTSFPKYLSEALNYRIFKS
GQYTSLIYFLMGFSTFVSGQLSSCLRRRGVSATVLRKV
Run BLAST on NCBI

transcript from alignment at scaffold_21:16054..21331+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052066 ID=TCONS_00052066|Name=TCONS_00052066|organism=Clytia hemisphaerica|type=transcript|length=5278bp|location=Sequence derived from alignment at scaffold_21:16054..21331+ (Clytia hemisphaerica)
CAGGCATCATGGAAATGCCGCTATACAAATAAAGGTTAGGATTGTGATGT
GATTTTTAATTGTTGGAGATTCAGAAATCATTGGTGTATTTTGGGGTTAT
TATtattagattttaaatttttatccaATCTCAGTGGATAAANACAGATA
TTATTGGTGTATTTTGGGGTTATTATTATTAGATTGTAAATTTTCATCCA
ATCTCAGTggataaaatttttatcaagGATTCTAAATCAAACAACAGCCC
GAATAACAACCATACAATAAACTTCTACTGTTTAATAAATAGACATGGTA
AATCAGAGATATTATTGAGGATACGTAGAACTTGAGAAGTTTCCACATTG
TATGAGCAAGATGAGCGAAGAACAAAATGAACAACAGAAGACGCTATATC
ATCAGAAGGCTCACAACATAGAAGCTGAAACTCCTATGCCACTATCAGAT
AATCTGGAAGTTGATAAAAGAGTGACTGCAAATGGGTCTAAAAAACAGCC
TCTATACCATCAGAACTCTTTTGAGGATGGTGGATCTACGGCTAGTGATA
TTTTACATTTATACGGGAAGAAGAATACTGCTCGAGTAAAATTGAGTATA
AGTTACAGTGAGGGCGGGACGAGGAGTTATTTAGAACAACCGCCCTCCAT
CGAAGACTGTCTCGAAACGAATGATGATTTTCGATTTCAATCGAGGACTT
GCAAATGCTTACCAAAACGTTATGTGTTGGCTTTGTTGAGTTTCTTTGGG
TTTTTCAATGTTTATTGTTTACGTGTTGATTTGAGTGTGACGCTGGTTGC
CATGACATCAAATCATACACGAGTGAGGGCTGATGGGACGGAATATACGG
TAAGTTGGAGTACAGTCTAATATTTTTCTGTGACTTGATTAAATGTTTTC
AGTGACAAACTTACAAACGCCCATTTATTTGATAACGATAAAAATATCGG
GTTATGTGTAGGTAAAATTCTAGAGgccatacaataaaaaaaacaatgag
tTTTGAGTGTTTTTATTATCacctttattactttttaggCGTTGGCTGAA
TTTCAATGGAACAGAGAACTTCAAGGTAAAGCCCATGAATCTTTTCTGTT
AGGCGGAAACACTTCTGCTTAGCCTAcataaaaaattcttataagagATA
CAGGCCTACTACTCAGGATGTAAGTCCACGGAATTCTAGAAGTGTCCAcg
gaaataattaaaaactacAATCCCAACCGTAATATTTGGCACTAAAGGTG
AATTCACTCAAATTtgaaaaccgcaagtgatttttaagtgctttaaaaca
tttaaaatacggttggaaagtagagttttaacatgagagtTAAGACTTAG
GACCATAGGATCTCAGGACcataggatctcaggatctaaaagctcaaaaa
tgttccaataaggctgaaaatatagcctggaagcaacttaacccctccca
aatgaaaaaattcaatgaaacaaagcggaagtactgaaactgcaattctc
gccctatctttaaattctgaaaagcaTTAAAATacccaatatatttcggc
gccgTTTGTATATCTGTATACAATCCAATTTCAGGTCATTTATTAGCAGC
ATTTTATTATGGTTACATCATCACACAAATTCCTGGTGGTTATATAGCCG
CCCGTTTTGGCGGGAAAAATTTGTTCGGATTCGCCATCTTGATTAGTGGC
TTTTTGACGCTCCTGACACCGCTGGCGGCGAAAGAGCACTGGGTGTTATT
GTTTGTGTTGCGGCTCGTCGAAGGACTTTGTGAGGTAAGGAGAGCTTTAT
TGGTTAAAAATGACGAGGTGTGAAAAATGTTGGGAAATTGCGTAATTTAA
CAAAAATCAGAATGTTTTATTAGAGACAGCAATGGTTGATTTTATTTGAC
ATATCCTTCAAACTTGTAAATTAATAAGCTGTTATAAGGGAAATGGAGGC
AATCTNCTGTTATTTGTGTTGCGGCTAGTCGAAGGACTTTGTGAGGTAAG
GAGAGCTTTATTGGTCAAAAATGACGAGGTGTGAAAAGTGTTGGGAAATT
GCGTAATTTAACAAAAATCAGACACTATAGgctatttcacagtcgaaatg
gatcatgggtaatcaggactgattgcgcctccgtaacggctttctgttgg
ctagacgcaataatcttcaaaaaatttcaaaactctggaccaatagtaag
tcgtcattagcacgcagtggtcctgattacccattacgctttgcgactgt
gaaatggcctatagaggaaaacattcgaatttgaaaCGGTCATTACTTcc
acaaatcgaatgttttattAAAGACAGTAATGGTTGATTTTATTTGACAT
ATCCTTCAAACTTTTAAATTAATAAGCTGTTATAAGGGAAATGGAGGCAA
TCTAGCTATCTAGCAAAATACGCCAAAGAATGTTTACAattcaataaatc
aaaatacATGCTGGCACGGTTAAAGCGGATAAAGCACCTTTTTTAATTAT
AGGGTTGCATTTACCCGGCAATGTATTCGATATGGAGTCGTTGGGCGCCA
CCCATGGAAAGGGCGGCTCTAGTTACCATACCTCATTCAGGTAAGAGGGA
AATATGGATGGAATTCTTNCGTTGGGCGCCACCCATGGAAAGGGCGGCTC
TAGTCACCATACCTCATTCAGGTAAGAGGGAAATATGGATGGAATTCTTC
AGCAAAATGTTATCAATGCCAAAAATTGCCTTGTTTGCCCCTCAGTAGAA
TTTGAACTTTACATTCAAACTAATGCACATGGGAAGTCATTGTGCAACAA
ACAAGtcctaaagtctgtccagatataattgacagtggaaacaagaatgc
ctgtaacttttaatagtgaaatataattccaaaatttttttttgcttgtt
ttagagattcaaaagcgctatatttgaatgtattttttgttgaaaaattc
gcgagttttagcggttaaatttgcgattgcaaatattgagctttttttct
ttttatgctataacgttcatttttaaacTAGTGGTAGTTTAACCTTAGGT
AAAGAAGGTTGTTGAATTTCAAGCCAAacggaaaagtccttcggaagata
tgggacccgaaataccccttggtagcacttttctgtgaaatatcaaatct
ccaaatttttactaaaaacggtggttatgttatcttttttgaacagtgaa
attaaaagtttttggaattatatttcactattaaaagttacaggcattct
tgtttccactgccaattatatctggacagccTTAATTTCAATAAGGCAAC
AAGGTTTTTAGATCTTTCCCAATCGGGGCAATTGGGAACTTCTTTTGGTT
TCTAGTTTAGCAGGTACAACCAtcaaacaaaaactaaaaaaaaagttttt
tagccTAGGGTATCACCTAATTTATGACTGCTCCTTCAAAATTTCCGTTC
TATCTTTATTTAATCATAGGATCGTATGCAGGATCGGTGGCAGGAACACT
ACTTGCTGGATACCTCTGTGAGGTTTGTGGATGGAGCTGGGTCTTCTATT
TCTTTGGTAAGTAAAATTATCACACATATATAATCGAAATTGAACCTGGG
GGTGCACCCGATCTTAAAACTACCGTATGCACTGAAAAAACTTATTCAAG
ATTGAATctttacagtgcagagaaaatttagccaaaactGAGTAAGTTgg
tcgaaaaatggacccttaTGGTGTATTTTACTTCAGAAAATagtcagatt
ttccaaaattttcataTTACACCCCTACAGTGCACGTTCTCACATTTCGA
CCCTtgcactttgggaagcctgCATCGGGGAAAacagaacatattttttt
taccaaaCCAGAAAGATAatggaaaattgaaattgaagtaGCGAGTTCAA
CTATATTGGTATATGTTTTGTTTCCACgtatatggaaatttttaaggATT
TTCCAGGAACGTTTTGAAGTTTAGTAACGTTTCTTTCACTCCAAATAAAT
GGATACGACTGAAAGCCCAGTGTAAAagataaattatttcattttcaggt
ATTTTAGCATTAATTTGGGTAGTTGTATGGCAGATCCTTGCATCAGATTC
ACCAGAAGACGATAACCATATATCAAATGTTGAACGAAGAATGATTTTAG
AAAGTTTGGAATCAGAGCACACTTCACAAAAGGTAAGAGACAGCGATAAA
ATGCGTATTAGTGAGGGGTGTGGTATAAGATTTAGTCCCTTCCTATGAAT
ATTACCGCAGAAATCATTTTTTGCTGATAGAATTTAAAACACAAGTCCGC
CATTTGGTTCCAAGACGACAAAAACCTAGCTTTTGTTACCTCAGTTCGGA
AAACAAGGTATAGAGTTTTTCATGATTTGCTGAGTTACAAACTTTCCGTC
AGACGGAAAAAAACGTTCGATTTTCGTAAGCGATCACCTTTACatattcg
aacgtttgcttccataatggtggaaattacgtaactttaAAAAACATGAA
GAACTTCTATATACGGCATAAACCGTACATGCGGGATAAGCCGAGTTTGG
TCTTTCGTTTTCATTAGCTCACAATTCAAGGTGACACTAAAATCTTACCT
TTACTATGAACACAACTTTTCATTTCAGCTTTCAGATGATCTTCCATGGT
TTTCAATCTTCACTTCTTTACCTTTCATTTCAATTGCGGTGGCCCACACG
TGCGAAGGATGGGCATTCGGTTTGATTCAAACATCCTTCCCCAAATATTT
GAGTGAAGCTCTAAattatagaatttttaaagTAAGTTAACAACTGTTTA
TAAGAGAACTTTAGGTCTCTCTTCATAATTCTTTCTGCTGTTTATTTTGG
TATTGAACCGACGTTCAGGTACGGCATAATCTCCTTATGATGGACAGAGA
TTAGCGCTGATTCCAGTGGTGATTCTGAGGGGATTCATAATTTATGACGG
GGGGAATAAACACTCCCCATCATAAATTTTGAGCACCCCTTTGATCCGCT
GCAGGGTTCGATGAAAATTATGTATCTgttatttttttggtaaaacttCA
TTCTTTGAAATGGACCAGGTTTTGTCGCGTCGCATAAAAGAAGTCACGGG
TCCTATAAGTGTTTGCTCTCtactaaatattttcaattattttttctcGT
CATTCCCAGTCCGGTCAATACACCAGCCTGATATATTTCCTGATGGGATT
TTCAACATTCGTCTCTGGTCAACTATCTTCATGTTTGAGAAGGCGAGGTG
TTTCGGCAACAGTTCTACGTAAAGTATT

Coding sequence (CDS) from alignment at scaffold_21:16054..21331+

>TCONS_00052066 ID=TCONS_00052066|Name=TCONS_00052066|organism=Clytia hemisphaerica|type=CDS|length=10512bp|location=Sequence derived from alignment at scaffold_21:16054..21331+ (Clytia hemisphaerica)
ATGAGCAAGATGAGCGAAGAACAAAATGAACAACAGAAGACGCTATATCA
TCAGAAGGCTCACAACATAGAAGCTGAAACTCCTATGCCACTATCAGATA
ATCTGGAAGTTGATAAAAGAGTGACTGCAAATGGGTCTAAAAAACAGCCT
CTATACCATCAGAACTCTTTTGAGGATGGTGGATCTACGGCTAGTGATAT
TTTACATTTATACGGGAAGAAGAATACTGCTCGAGTAAAATTGAGTATAA
GTTACAGTGAGGGCGGGACGAGGAGTTATTTAGAACAACCGCCCTCCATC
GAAGACTGTCTCGAAACGAATGATGATTTTCGATTTCAATCGAGGACTTG
CAAATGCTTACCAAAACGTTATGTGTTGGCTTTGTTGAGTTTCTTTGGGT
TTTTCAATGTTTATTGTTTACGTGTTGATTTGAGTGTGACGCTGGTTGCC
ATGACATCAAATCATACACGAGTGAGGGCTGATGGGACGGAATATACGgC
GTTGGCTGAATTTCAATGGAACAGAGAACTTCAAGGTCATTTATTAGCAG
CATTTTATTATGGTTACATCATCACACAAATTCCTGGTGGTTATATAGCC
GCCCGTTTTGGCGGGAAAAATTTGTTCGGATTCGCCATCTTGATTAGTGG
CTTTTTGACGCTCCTGACACCGCTGGCGGCGAAAGAGCACTGGGTGTTAT
TGTTTGTGTTGCGGCTCGTCGAAGGACTTTGTGAGGGTTGCATTTACCCG
GCAATGTATTCGATATGGAGTCGTTGGGCGCCACCCATGGAAAGGGCGGC
TCTAGTTACCATACCTCATTCAGGATCGTATGCAGGATCGGTGGCAGGAA
CACTACTTGCTGGATACCTCTGTGAGGTTTGTGGATGGAGCTGGGTCTTC
TATTTCTTTGgtATTTTAGCATTAATTTGGGTAGTTGTATGGCAGATCCT
TGCATCAGATTCACCAGAAGACGATAACCATATATCAAATGTTGAACGAA
GAATGATTTTAGAAAGTTTGGAATCAGAGCACACTTCACAAAAGCTTTCA
GATGATCTTCCATGGTTTTCAATCTTCACTTCTTTACCTTTCATTTCAAT
TGCGGTGGCCCACACGTGCGAAGGATGGGCATTCGGTTTGATTCAAACAT
CCTTCCCCAAATATTTGAGTGAAGCTCTAAattatagaatttttaaaTCC
GGTCAATACACCAGCCTGATATATTTCCTGATGGGATTTTCAACATTCGT
CTCTGGTCAACTATCTTCATGTTTGAGAAGGCGAGGTGTTTCGGCAACAG
TTCTACGTAAAGTAATGAGCAAGATGAGCGAAGAACAAAATGAACAACAG
AAGACGCTATATCATCAGAAGGCTCACAACATAGAAGCTGAAACTCCTAT
GCCACTATCAGATAATCTGGAAGTTGATAAAAGAGTGACTGCAAATGGGT
CTAAAAAACAGCCTCTATACCATCAGAACTCTTTTGAGGATGGTGGATCT
ACGGCTAGTGATATTTTACATTTATACGGGAAGAAGAATACTGCTCGAGT
AAAATTGAGTATAAGTTACAGTGAGGGCGGGACGAGGAGTTATTTAGAAC
AACCGCCCTCCATCGAAGACTGTCTCGAAACGAATGATGATTTTCGATTT
CAATCGAGGACTTGCAAATGCTTACCAAAACGTTATGTGTTGGCTTTGTT
GAGTTTCTTTGGGTTTTTCAATGTTTATTGTTTACGTGTTGATTTGAGTG
TGACGCTGGTTGCCATGACATCAAATCATACACGAGTGAGGGCTGATGGG
ACGGAATATACGgCGTTGGCTGAATTTCAATGGAACAGAGAACTTCAAGG
TCATTTATTAGCAGCATTTTATTATGGTTACATCATCACACAAATTCCTG
GTGGTTATATAGCCGCCCGTTTTGGCGGGAAAAATTTGTTCGGATTCGCC
ATCTTGATTAGTGGCTTTTTGACGCTCCTGACACCGCTGGCGGCGAAAGA
GCACTGGGTGTTATTGTTTGTGTTGCGGCTCGTCGAAGGACTTTGTGAGG
GTTGCATTTACCCGGCAATGTATTCGATATGGAGTCGTTGGGCGCCACCC
ATGGAAAGGGCGGCTCTAGTTACCATACCTCATTCAGGATCGTATGCAGG
ATCGGTGGCAGGAACACTACTTGCTGGATACCTCTGTGAGGTTTGTGGAT
GGAGCTGGGTCTTCTATTTCTTTGgtATTTTAGCATTAATTTGGGTAGTT
GTATGGCAGATCCTTGCATCAGATTCACCAGAAGACGATAACCATATATC
AAATGTTGAACGAAGAATGATTTTAGAAAGTTTGGAATCAGAGCACACTT
CACAAAAGCTTTCAGATGATCTTCCATGGTTTTCAATCTTCACTTCTTTA
CCTTTCATTTCAATTGCGGTGGCCCACACGTGCGAAGGATGGGCATTCGG
TTTGATTCAAACATCCTTCCCCAAATATTTGAGTGAAGCTCTAAattata
gaatttttaaaTCCGGTCAATACACCAGCCTGATATATTTCCTGATGGGA
TTTTCAACATTCGTCTCTGGTCAACTATCTTCATGTTTGAGAAGGCGAGG
TGTTTCGGCAACAGTTCTACGTAAAGTAATGAGCAAGATGAGCGAAGAAC
AAAATGAACAACAGAAGACGCTATATCATCAGAAGGCTCACAACATAGAA
GCTGAAACTCCTATGCCACTATCAGATAATCTGGAAGTTGATAAAAGAGT
GACTGCAAATGGGTCTAAAAAACAGCCTCTATACCATCAGAACTCTTTTG
AGGATGGTGGATCTACGGCTAGTGATATTTTACATTTATACGGGAAGAAG
AATACTGCTCGAGTAAAATTGAGTATAAGTTACAGTGAGGGCGGGACGAG
GAGTTATTTAGAACAACCGCCCTCCATCGAAGACTGTCTCGAAACGAATG
ATGATTTTCGATTTCAATCGAGGACTTGCAAATGCTTACCAAAACGTTAT
GTGTTGGCTTTGTTGAGTTTCTTTGGGTTTTTCAATGTTTATTGTTTACG
TGTTGATTTGAGTGTGACGCTGGTTGCCATGACATCAAATCATACACGAG
TGAGGGCTGATGGGACGGAATATACGgCGTTGGCTGAATTTCAATGGAAC
AGAGAACTTCAAGGTCATTTATTAGCAGCATTTTATTATGGTTACATCAT
CACACAAATTCCTGGTGGTTATATAGCCGCCCGTTTTGGCGGGAAAAATT
TGTTCGGATTCGCCATCTTGATTAGTGGCTTTTTGACGCTCCTGACACCG
CTGGCGGCGAAAGAGCACTGGGTGTTATTGTTTGTGTTGCGGCTCGTCGA
AGGACTTTGTGAGGGTTGCATTTACCCGGCAATGTATTCGATATGGAGTC
GTTGGGCGCCACCCATGGAAAGGGCGGCTCTAGTTACCATACCTCATTCA
GGATCGTATGCAGGATCGGTGGCAGGAACACTACTTGCTGGATACCTCTG
TGAGGTTTGTGGATGGAGCTGGGTCTTCTATTTCTTTGgtATTTTAGCAT
TAATTTGGGTAGTTGTATGGCAGATCCTTGCATCAGATTCACCAGAAGAC
GATAACCATATATCAAATGTTGAACGAAGAATGATTTTAGAAAGTTTGGA
ATCAGAGCACACTTCACAAAAGCTTTCAGATGATCTTCCATGGTTTTCAA
TCTTCACTTCTTTACCTTTCATTTCAATTGCGGTGGCCCACACGTGCGAA
GGATGGGCATTCGGTTTGATTCAAACATCCTTCCCCAAATATTTGAGTGA
AGCTCTAAattatagaatttttaaaTCCGGTCAATACACCAGCCTGATAT
ATTTCCTGATGGGATTTTCAACATTCGTCTCTGGTCAACTATCTTCATGT
TTGAGAAGGCGAGGTGTTTCGGCAACAGTTCTACGTAAAGTAATGAGCAA
GATGAGCGAAGAACAAAATGAACAACAGAAGACGCTATATCATCAGAAGG
CTCACAACATAGAAGCTGAAACTCCTATGCCACTATCAGATAATCTGGAA
GTTGATAAAAGAGTGACTGCAAATGGGTCTAAAAAACAGCCTCTATACCA
TCAGAACTCTTTTGAGGATGGTGGATCTACGGCTAGTGATATTTTACATT
TATACGGGAAGAAGAATACTGCTCGAGTAAAATTGAGTATAAGTTACAGT
GAGGGCGGGACGAGGAGTTATTTAGAACAACCGCCCTCCATCGAAGACTG
TCTCGAAACGAATGATGATTTTCGATTTCAATCGAGGACTTGCAAATGCT
TACCAAAACGTTATGTGTTGGCTTTGTTGAGTTTCTTTGGGTTTTTCAAT
GTTTATTGTTTACGTGTTGATTTGAGTGTGACGCTGGTTGCCATGACATC
AAATCATACACGAGTGAGGGCTGATGGGACGGAATATACGgCGTTGGCTG
AATTTCAATGGAACAGAGAACTTCAAGGTCATTTATTAGCAGCATTTTAT
TATGGTTACATCATCACACAAATTCCTGGTGGTTATATAGCCGCCCGTTT
TGGCGGGAAAAATTTGTTCGGATTCGCCATCTTGATTAGTGGCTTTTTGA
CGCTCCTGACACCGCTGGCGGCGAAAGAGCACTGGGTGTTATTGTTTGTG
TTGCGGCTCGTCGAAGGACTTTGTGAGGGTTGCATTTACCCGGCAATGTA
TTCGATATGGAGTCGTTGGGCGCCACCCATGGAAAGGGCGGCTCTAGTTA
CCATACCTCATTCAGGATCGTATGCAGGATCGGTGGCAGGAACACTACTT
GCTGGATACCTCTGTGAGGTTTGTGGATGGAGCTGGGTCTTCTATTTCTT
TGgtATTTTAGCATTAATTTGGGTAGTTGTATGGCAGATCCTTGCATCAG
ATTCACCAGAAGACGATAACCATATATCAAATGTTGAACGAAGAATGATT
TTAGAAAGTTTGGAATCAGAGCACACTTCACAAAAGCTTTCAGATGATCT
TCCATGGTTTTCAATCTTCACTTCTTTACCTTTCATTTCAATTGCGGTGG
CCCACACGTGCGAAGGATGGGCATTCGGTTTGATTCAAACATCCTTCCCC
AAATATTTGAGTGAAGCTCTAAattatagaatttttaaaTCCGGTCAATA
CACCAGCCTGATATATTTCCTGATGGGATTTTCAACATTCGTCTCTGGTC
AACTATCTTCATGTTTGAGAAGGCGAGGTGTTTCGGCAACAGTTCTACGT
AAAGTAATGAGCAAGATGAGCGAAGAACAAAATGAACAACAGAAGACGCT
ATATCATCAGAAGGCTCACAACATAGAAGCTGAAACTCCTATGCCACTAT
CAGATAATCTGGAAGTTGATAAAAGAGTGACTGCAAATGGGTCTAAAAAA
CAGCCTCTATACCATCAGAACTCTTTTGAGGATGGTGGATCTACGGCTAG
TGATATTTTACATTTATACGGGAAGAAGAATACTGCTCGAGTAAAATTGA
GTATAAGTTACAGTGAGGGCGGGACGAGGAGTTATTTAGAACAACCGCCC
TCCATCGAAGACTGTCTCGAAACGAATGATGATTTTCGATTTCAATCGAG
GACTTGCAAATGCTTACCAAAACGTTATGTGTTGGCTTTGTTGAGTTTCT
TTGGGTTTTTCAATGTTTATTGTTTACGTGTTGATTTGAGTGTGACGCTG
GTTGCCATGACATCAAATCATACACGAGTGAGGGCTGATGGGACGGAATA
TACGgCGTTGGCTGAATTTCAATGGAACAGAGAACTTCAAGGTCATTTAT
TAGCAGCATTTTATTATGGTTACATCATCACACAAATTCCTGGTGGTTAT
ATAGCCGCCCGTTTTGGCGGGAAAAATTTGTTCGGATTCGCCATCTTGAT
TAGTGGCTTTTTGACGCTCCTGACACCGCTGGCGGCGAAAGAGCACTGGG
TGTTATTGTTTGTGTTGCGGCTCGTCGAAGGACTTTGTGAGGGTTGCATT
TACCCGGCAATGTATTCGATATGGAGTCGTTGGGCGCCACCCATGGAAAG
GGCGGCTCTAGTTACCATACCTCATTCAGGATCGTATGCAGGATCGGTGG
CAGGAACACTACTTGCTGGATACCTCTGTGAGGTTTGTGGATGGAGCTGG
GTCTTCTATTTCTTTGgtATTTTAGCATTAATTTGGGTAGTTGTATGGCA
GATCCTTGCATCAGATTCACCAGAAGACGATAACCATATATCAAATGTTG
AACGAAGAATGATTTTAGAAAGTTTGGAATCAGAGCACACTTCACAAAAG
CTTTCAGATGATCTTCCATGGTTTTCAATCTTCACTTCTTTACCTTTCAT
TTCAATTGCGGTGGCCCACACGTGCGAAGGATGGGCATTCGGTTTGATTC
AAACATCCTTCCCCAAATATTTGAGTGAAGCTCTAAattatagaattttt
aaaTCCGGTCAATACACCAGCCTGATATATTTCCTGATGGGATTTTCAAC
ATTCGTCTCTGGTCAACTATCTTCATGTTTGAGAAGGCGAGGTGTTTCGG
CAACAGTTCTACGTAAAGTAATGAGCAAGATGAGCGAAGAACAAAATGAA
CAACAGAAGACGCTATATCATCAGAAGGCTCACAACATAGAAGCTGAAAC
TCCTATGCCACTATCAGATAATCTGGAAGTTGATAAAAGAGTGACTGCAA
ATGGGTCTAAAAAACAGCCTCTATACCATCAGAACTCTTTTGAGGATGGT
GGATCTACGGCTAGTGATATTTTACATTTATACGGGAAGAAGAATACTGC
TCGAGTAAAATTGAGTATAAGTTACAGTGAGGGCGGGACGAGGAGTTATT
TAGAACAACCGCCCTCCATCGAAGACTGTCTCGAAACGAATGATGATTTT
CGATTTCAATCGAGGACTTGCAAATGCTTACCAAAACGTTATGTGTTGGC
TTTGTTGAGTTTCTTTGGGTTTTTCAATGTTTATTGTTTACGTGTTGATT
TGAGTGTGACGCTGGTTGCCATGACATCAAATCATACACGAGTGAGGGCT
GATGGGACGGAATATACGgCGTTGGCTGAATTTCAATGGAACAGAGAACT
TCAAGGTCATTTATTAGCAGCATTTTATTATGGTTACATCATCACACAAA
TTCCTGGTGGTTATATAGCCGCCCGTTTTGGCGGGAAAAATTTGTTCGGA
TTCGCCATCTTGATTAGTGGCTTTTTGACGCTCCTGACACCGCTGGCGGC
GAAAGAGCACTGGGTGTTATTGTTTGTGTTGCGGCTCGTCGAAGGACTTT
GTGAGGGTTGCATTTACCCGGCAATGTATTCGATATGGAGTCGTTGGGCG
CCACCCATGGAAAGGGCGGCTCTAGTTACCATACCTCATTCAGGATCGTA
TGCAGGATCGGTGGCAGGAACACTACTTGCTGGATACCTCTGTGAGGTTT
GTGGATGGAGCTGGGTCTTCTATTTCTTTGgtATTTTAGCATTAATTTGG
GTAGTTGTATGGCAGATCCTTGCATCAGATTCACCAGAAGACGATAACCA
TATATCAAATGTTGAACGAAGAATGATTTTAGAAAGTTTGGAATCAGAGC
ACACTTCACAAAAGCTTTCAGATGATCTTCCATGGTTTTCAATCTTCACT
TCTTTACCTTTCATTTCAATTGCGGTGGCCCACACGTGCGAAGGATGGGC
ATTCGGTTTGATTCAAACATCCTTCCCCAAATATTTGAGTGAAGCTCTAA
attatagaatttttaaaTCCGGTCAATACACCAGCCTGATATATTTCCTG
ATGGGATTTTCAACATTCGTCTCTGGTCAACTATCTTCATGTTTGAGAAG
GCGAGGTGTTTCGGCAACAGTTCTACGTAAAGTAATGAGCAAGATGAGCG
AAGAACAAAATGAACAACAGAAGACGCTATATCATCAGAAGGCTCACAAC
ATAGAAGCTGAAACTCCTATGCCACTATCAGATAATCTGGAAGTTGATAA
AAGAGTGACTGCAAATGGGTCTAAAAAACAGCCTCTATACCATCAGAACT
CTTTTGAGGATGGTGGATCTACGGCTAGTGATATTTTACATTTATACGGG
AAGAAGAATACTGCTCGAGTAAAATTGAGTATAAGTTACAGTGAGGGCGG
GACGAGGAGTTATTTAGAACAACCGCCCTCCATCGAAGACTGTCTCGAAA
CGAATGATGATTTTCGATTTCAATCGAGGACTTGCAAATGCTTACCAAAA
CGTTATGTGTTGGCTTTGTTGAGTTTCTTTGGGTTTTTCAATGTTTATTG
TTTACGTGTTGATTTGAGTGTGACGCTGGTTGCCATGACATCAAATCATA
CACGAGTGAGGGCTGATGGGACGGAATATACGgCGTTGGCTGAATTTCAA
TGGAACAGAGAACTTCAAGGTCATTTATTAGCAGCATTTTATTATGGTTA
CATCATCACACAAATTCCTGGTGGTTATATAGCCGCCCGTTTTGGCGGGA
AAAATTTGTTCGGATTCGCCATCTTGATTAGTGGCTTTTTGACGCTCCTG
ACACCGCTGGCGGCGAAAGAGCACTGGGTGTTATTGTTTGTGTTGCGGCT
CGTCGAAGGACTTTGTGAGGGTTGCATTTACCCGGCAATGTATTCGATAT
GGAGTCGTTGGGCGCCACCCATGGAAAGGGCGGCTCTAGTTACCATACCT
CATTCAGGATCGTATGCAGGATCGGTGGCAGGAACACTACTTGCTGGATA
CCTCTGTGAGGTTTGTGGATGGAGCTGGGTCTTCTATTTCTTTGgtATTT
TAGCATTAATTTGGGTAGTTGTATGGCAGATCCTTGCATCAGATTCACCA
GAAGACGATAACCATATATCAAATGTTGAACGAAGAATGATTTTAGAAAG
TTTGGAATCAGAGCACACTTCACAAAAGCTTTCAGATGATCTTCCATGGT
TTTCAATCTTCACTTCTTTACCTTTCATTTCAATTGCGGTGGCCCACACG
TGCGAAGGATGGGCATTCGGTTTGATTCAAACATCCTTCCCCAAATATTT
GAGTGAAGCTCTAAattatagaatttttaaaTCCGGTCAATACACCAGCC
TGATATATTTCCTGATGGGATTTTCAACATTCGTCTCTGGTCAACTATCT
TCATGTTTGAGAAGGCGAGGTGTTTCGGCAACAGTTCTACGTAAAGTAAT
GAGCAAGATGAGCGAAGAACAAAATGAACAACAGAAGACGCTATATCATC
AGAAGGCTCACAACATAGAAGCTGAAACTCCTATGCCACTATCAGATAAT
CTGGAAGTTGATAAAAGAGTGACTGCAAATGGGTCTAAAAAACAGCCTCT
ATACCATCAGAACTCTTTTGAGGATGGTGGATCTACGGCTAGTGATATTT
TACATTTATACGGGAAGAAGAATACTGCTCGAGTAAAATTGAGTATAAGT
TACAGTGAGGGCGGGACGAGGAGTTATTTAGAACAACCGCCCTCCATCGA
AGACTGTCTCGAAACGAATGATGATTTTCGATTTCAATCGAGGACTTGCA
AATGCTTACCAAAACGTTATGTGTTGGCTTTGTTGAGTTTCTTTGGGTTT
TTCAATGTTTATTGTTTACGTGTTGATTTGAGTGTGACGCTGGTTGCCAT
GACATCAAATCATACACGAGTGAGGGCTGATGGGACGGAATATACGgCGT
TGGCTGAATTTCAATGGAACAGAGAACTTCAAGGTCATTTATTAGCAGCA
TTTTATTATGGTTACATCATCACACAAATTCCTGGTGGTTATATAGCCGC
CCGTTTTGGCGGGAAAAATTTGTTCGGATTCGCCATCTTGATTAGTGGCT
TTTTGACGCTCCTGACACCGCTGGCGGCGAAAGAGCACTGGGTGTTATTG
TTTGTGTTGCGGCTCGTCGAAGGACTTTGTGAGGGTTGCATTTACCCGGC
AATGTATTCGATATGGAGTCGTTGGGCGCCACCCATGGAAAGGGCGGCTC
TAGTTACCATACCTCATTCAGGATCGTATGCAGGATCGGTGGCAGGAACA
CTACTTGCTGGATACCTCTGTGAGGTTTGTGGATGGAGCTGGGTCTTCTA
TTTCTTTGgtATTTTAGCATTAATTTGGGTAGTTGTATGGCAGATCCTTG
CATCAGATTCACCAGAAGACGATAACCATATATCAAATGTTGAACGAAGA
ATGATTTTAGAAAGTTTGGAATCAGAGCACACTTCACAAAAGCTTTCAGA
TGATCTTCCATGGTTTTCAATCTTCACTTCTTTACCTTTCATTTCAATTG
CGGTGGCCCACACGTGCGAAGGATGGGCATTCGGTTTGATTCAAACATCC
TTCCCCAAATATTTGAGTGAAGCTCTAAattatagaatttttaaaTCCGG
TCAATACACCAGCCTGATATATTTCCTGATGGGATTTTCAACATTCGTCT
CTGGTCAACTATCTTCATGTTTGAGAAGGCGAGGTGTTTCGGCAACAGTT
CTACGTAAAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032975XLOC_032975Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052066-exon-scaffold_21-1491911889:16054..16902TCONS_00052066-exon-scaffold_21-1491911889:16054..16902Clytia hemisphaericaexon
TCONS_00052066-exon-scaffold_21-1510915933:16054..16902TCONS_00052066-exon-scaffold_21-1510915933:16054..16902Clytia hemisphaericaexon
TCONS_00052066-exon-scaffold_21-1575043694:16054..16902TCONS_00052066-exon-scaffold_21-1575043694:16054..16902Clytia hemisphaericaexon
TCONS_00052066-exon-scaffold_21-1491911889:17092..17128TCONS_00052066-exon-scaffold_21-1491911889:17092..17128Clytia hemisphaericaexon
TCONS_00052066-exon-scaffold_21-1510915933:17092..17128TCONS_00052066-exon-scaffold_21-1510915933:17092..17128Clytia hemisphaericaexon
TCONS_00052066-exon-scaffold_21-1575043694:17092..17128TCONS_00052066-exon-scaffold_21-1575043694:17092..17128Clytia hemisphaericaexon
TCONS_00052066-exon-scaffold_21-1491911889:17638..17837TCONS_00052066-exon-scaffold_21-1491911889:17638..17837Clytia hemisphaericaexon
TCONS_00052066-exon-scaffold_21-1510915933:17638..17837TCONS_00052066-exon-scaffold_21-1510915933:17638..17837Clytia hemisphaericaexon
TCONS_00052066-exon-scaffold_21-1575043694:17638..17837TCONS_00052066-exon-scaffold_21-1575043694:17638..17837Clytia hemisphaericaexon
TCONS_00052066-exon-scaffold_21-1491911889:18556..18643TCONS_00052066-exon-scaffold_21-1491911889:18556..18643Clytia hemisphaericaexon
TCONS_00052066-exon-scaffold_21-1510915933:18556..18643TCONS_00052066-exon-scaffold_21-1510915933:18556..18643Clytia hemisphaericaexon
TCONS_00052066-exon-scaffold_21-1575043694:18556..18643TCONS_00052066-exon-scaffold_21-1575043694:18556..18643Clytia hemisphaericaexon
TCONS_00052066-exon-scaffold_21-1491911889:19523..19609TCONS_00052066-exon-scaffold_21-1491911889:19523..19609Clytia hemisphaericaexon
TCONS_00052066-exon-scaffold_21-1510915933:19523..19609TCONS_00052066-exon-scaffold_21-1510915933:19523..19609Clytia hemisphaericaexon
TCONS_00052066-exon-scaffold_21-1575043694:19523..19609TCONS_00052066-exon-scaffold_21-1575043694:19523..19609Clytia hemisphaericaexon
TCONS_00052066-exon-scaffold_21-1491911889:20102..20235TCONS_00052066-exon-scaffold_21-1491911889:20102..20235Clytia hemisphaericaexon
TCONS_00052066-exon-scaffold_21-1510915933:20102..20235TCONS_00052066-exon-scaffold_21-1510915933:20102..20235Clytia hemisphaericaexon
TCONS_00052066-exon-scaffold_21-1575043694:20102..20235TCONS_00052066-exon-scaffold_21-1575043694:20102..20235Clytia hemisphaericaexon
TCONS_00052066-exon-scaffold_21-1491911889:20682..20834TCONS_00052066-exon-scaffold_21-1491911889:20682..20834Clytia hemisphaericaexon
TCONS_00052066-exon-scaffold_21-1510915933:20682..20834TCONS_00052066-exon-scaffold_21-1510915933:20682..20834Clytia hemisphaericaexon
TCONS_00052066-exon-scaffold_21-1575043694:20682..20834TCONS_00052066-exon-scaffold_21-1575043694:20682..20834Clytia hemisphaericaexon
TCONS_00052066-exon-scaffold_21-1491911889:21213..21331TCONS_00052066-exon-scaffold_21-1491911889:21213..21331Clytia hemisphaericaexon
TCONS_00052066-exon-scaffold_21-1510915933:21213..21331TCONS_00052066-exon-scaffold_21-1510915933:21213..21331Clytia hemisphaericaexon
TCONS_00052066-exon-scaffold_21-1575043694:21213..21331TCONS_00052066-exon-scaffold_21-1575043694:21213..21331Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052066-proteinTCONS_00052066-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:16054..21331 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0243332	0.0790334	0.165307	0.0747144	0.0334647	0	1.60423	1.86718	0.284186	0.528016	0.553366	0.494121	1.1663	1.00158	0.746127	3.43194	2.25317	1.53097	0	0.0270676	0.973129	1.33596	0.669598	0.703085	0.784275	1.26028	0.133462	0	0.135208	0.0275168
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00052066 vs. Swiss-Prot (Human)
Match: S17A5 (Sialin OS=Homo sapiens GN=SLC17A5 PE=1 SV=2)

HSP 1 Score: 259.996 bits (663), Expect = 6.105e-79
Identity = 140/335 (41.79%), Postives = 203/335 (60.60%), Query Frame = 1 
Query:  706 CLPKRYVLALLSFFGFFNVYCLRVDLSVTLVAMTSNHTRVRADGT-----EYTAL---------AEFQWNRELQGHLLAAFYYGYIITQIPGGYIAARFGGKNLFGFAILISGFLTLLTPLAAKEHWVLLFVLRLVEGLCEGCIYPAMYSIWSRWAPPMERAALVTIPHSGSYAGSVAGTLLAGYLCEVCGWSWVFYFFGILALIWVVVWQILASDSPEDDNHISNVERRMILESLESEHTSQKLSDDLPWFSIFTSLPFISIAVAHTCEGWAFGLIQTSFPKYLSEALNYRIFKSGQYTSLIYFLMGFSTFVSGQLSSCLRRR-GVSATVLRKV 1665
            C   RY LA+L+FFGFF VY LRV+LSV LV M  ++T +  + T     E++A           ++QW+ E QG +L +F+YGYIITQIPGGY+A++ GGK L GF IL +  LTL TP+AA      L VLR +EGL EG  +PAM+++WS WAPP+ER+ L++I ++G+  G+V    L+G +C    W++VFYFFG + + W ++W  L SD+P+    IS+ E+  IL SL ++ +SQK    +PW  I  SLP  +I VAH    W F  + T  P Y+ E L + + ++G  +SL Y        +SGQ +  LR +   S   +R++
Sbjct:   35 CCSARYNLAILAFFGFFIVYALRVNLSVALVDMVDSNTTLEDNRTSKACPEHSAPIKVHHNQTGKKYQWDAETQGWILGSFFYGYIITQIPGGYVASKIGGKMLLGFGILGTAVLTLFTPIAADLGVGPLIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGIICYYMNWTYVFYFFGTIGIFWFLLWIWLVSDTPQKHKRISHYEKEYILSSLRNQLSSQK---SVPWVPILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSSLPYLGSWLCMILSGQAADNLRAKWNFSTLCVRRI 366
The following BLAST results are available for this feature:
BLAST of TCONS_00052066 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S17A56.105e-7941.79Sialin OS=Homo sapiens GN=SLC17A5 PE=1 SV=2[more]
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