TCONS_00052065 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052065
Unique NameTCONS_00052065
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length474

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052065 ID=TCONS_00052065|Name=TCONS_00052065|organism=Clytia hemisphaerica|type=transcript|length=474bp
GAAAATCTCAAagctgaaatcaaaattttgatagatcatgtaaaattttt
agaaaatgaaaaacttgcTGCCGAGGAAGAGCTAGAAGATTTGATGAAAA
GTaatgaaataaaagtttttcataaAGGGTGTTACAATGCTGACATCCGC
GCTGTTTATGAAGACCTCCTATGCATGGGTGTGGGTACATCCAAAGTAAA
GGAGGTTATTAGAACAGTACTTAAAAATATTGCCAAGCGAGATGCTCCTG
TTCTACCGGGGGTGACTTTTGCTAAGGGAATGCTTCTTGAGGCCAGGAAT
CTTGCACAACAACATTTAGTTCATGTTTTATCTGGGGAAAAGATTTCTGA
AAGTGATTCTGCAACAAACTTTTCTGATCTAAATACCCTGCATAGTGATG
GCACTTCAAAAAAAGGTCGTTCATACTTATCATACGACATTACAACTAAA
ACTGGTGAAACTCTCAATGCTGGC
Run BLAST on NCBI

protein sequence of TCONS_00052065-protein

>TCONS_00052065-protein ID=TCONS_00052065-protein|Name=TCONS_00052065-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
ENLKAEIKILIDHVKFLENEKLAAEEELEDLMKSNEIKVFHKGCYNADIR
AVYEDLLCMGVGTSKVKEVIRTVLKNIAKRDAPVLPGVTFAKGMLLEARN
LAQQHLVHVLSGEKISESDSATNFSDLNTLHSDGTSKKGRSYLSYDITTK
TGETLNAG
Run BLAST on NCBI

transcript from alignment at scaffold_209:117523..117996

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052065 ID=TCONS_00052065|Name=TCONS_00052065|organism=Clytia hemisphaerica|type=transcript|length=474bp|location=Sequence derived from alignment at scaffold_209:117523..117996 (Clytia hemisphaerica)
GCCAGCATTGAGAGTTTCACCAGTTTTAGTTGTAATGTCGTATGATAAGT
ATGAACGACCTTTTTTTGAAGTGCCATCACTATGCAGGGTATTTAGATCA
GAAAAGTTTGTTGCAGAATCACTTTCAGAAATCTTTTCCCCAGATAAAAC
ATGAACTAAATGTTGTTGTGCAAGATTCCTGGCCTCAAGAAGCATTCCCT
TAGCAAAAGTCACCCCCGGTAGAACAGGAGCATCTCGCTTGGCAATATTT
TTAAGTACTGTTCTAATAACCTCCTTTACTTTGGATGTACCCACACCCAT
GCATAGGAGGTCTTCATAAACAGCGCGGATGTCAGCATTGTAACACCCTt
tatgaaaaacttttatttcattACTTTTCATCAAATCTTCTAGCTCTTCC
TCGGCAgcaagtttttcattttctaaaaattttacatgatctatcaaaat
tttgatttcagctTTGAGATTTTC

Coding sequence (CDS) from alignment at scaffold_209:117523..117996

>TCONS_00052065 ID=TCONS_00052065|Name=TCONS_00052065|organism=Clytia hemisphaerica|type=CDS|length=474bp|location=Sequence derived from alignment at scaffold_209:117523..117996 (Clytia hemisphaerica)
GCCAGCATTGAGAGTTTCACCAGTTTTAGTTGTAATGTCGTATGATAAGT
ATGAACGACCTTTTTTTGAAGTGCCATCACTATGCAGGGTATTTAGATCA
GAAAAGTTTGTTGCAGAATCACTTTCAGAAATCTTTTCCCCAGATAAAAC
ATGAACTAAATGTTGTTGTGCAAGATTCCTGGCCTCAAGAAGCATTCCCT
TAGCAAAAGTCACCCCCGGTAGAACAGGAGCATCTCGCTTGGCAATATTT
TTAAGTACTGTTCTAATAACCTCCTTTACTTTGGATGTACCCACACCCAT
GCATAGGAGGTCTTCATAAACAGCGCGGATGTCAGCATTGTAACACCCTt
tatgaaaaacttttatttcattACTTTTCATCAAATCTTCTAGCTCTTCC
TCGGCAgcaagtttttcattttctaaaaattttacatgatctatcaaaat
tttgatttcagctTTGAGATTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032974XLOC_032974Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052065-exon-scaffold_209-1491911889:117523..117996TCONS_00052065-exon-scaffold_209-1491911889:117523..117996Clytia hemisphaericaexon
TCONS_00052065-exon-scaffold_209-1510915933:117523..117996TCONS_00052065-exon-scaffold_209-1510915933:117523..117996Clytia hemisphaericaexon
TCONS_00052065-exon-scaffold_209-1575043694:117523..117996TCONS_00052065-exon-scaffold_209-1575043694:117523..117996Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052065-proteinTCONS_00052065-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_209supercontigscaffold_209:117523..117996 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.116631	0.245308	0	0.535601	0.0507822	0.380189	0.0616199	0.778621	0	0	0.708638	0	0	0.00706716	0	0	0	0.0802441	0	0	0.109258	0.0832417	0	0.256568	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052065 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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