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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052060 ID=TCONS_00052060|Name=TCONS_00052060|organism=Clytia hemisphaerica|type=transcript|length=807bp
aaaaaaaaaaaaagaacactAAGATCATACTAAAACAGCCAAGCATGAGT
TGCAGCAATGTCAAATTATTGAGCTATTTAATTGCTCATAGAGGTCATAA
ATCTCTGTAAATTCACTCGTTTTCTTCTTTAAATCTTTTCGTTTTTCGAC
CAAAGATACCGAAAGTTCCTCAAATTCCTTTTGAAGCAAAGAAAGTTCCT
TAAGGGACATGAAAAATCCAGTACACTTGATTTTCAAATTGCCTTCAAAA
AAGTCTATCTTTTCTAACAGCTGGCATCTCTCTTTTTCAATTTCGGATTT
CAATTTGTCCAGTGCTGAAAATGGAGCTTTCTCTTCATTCGCTATATCAG
TCTTTTTAAGTTGTTCATTTCCATTTGAGAGACTGTTTTCTTGTTGGCTG
TTAACTTGGATAAACTCATCTTGTTTACAGACATCCTTTGTTTGTATTAA
CGGTGTCGAGATAGGAGCAGCTTTGGaggtttctttggttttctgGAAAG
ATTTTGgtcctttatattttttatctgGCTGGATATAACACAGTGTAATG
TAAATATTTGTCTCATTGCCGTGCTTATTTCGGAAAGGAAATCTTGTTGA
GCGGTCTGGATATCTTGAGCGATAATTGTTCACCAATTCATCCCGTATTT
CATTAGTTTGTAATGTTACAAAAGCAGCCTCTGTTGGAACATTAGTTGGT
GTATTTCTATTCTTCCATATAAACATTTCAGTGATGGAAAGATTTGTAGT
AAATTGTCTCAAAATGTCTTGAACCTCATCTTCTTTGGTATAGAAAGGTA
GATTTCC Run BLAST on NCBI protein sequence of TCONS_00052060-protein >TCONS_00052060-protein ID=TCONS_00052060-protein|Name=TCONS_00052060-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
GNLPFYTKEDEVQDILRQFTTNLSITEMFIWKNRNTPTNVPTEAAFVTLQ
TNEIRDELVNNYRSRYPDRSTRFPFRNKHGNETNIYITLCYIQPDKKYKG
PKSFQKTKETSKAAPISTPLIQTKDVCKQDEFIQVNSQQENSLSNGNEQL
KKTDIANEEKAPFSALDKLKSEIEKERCQLLEKIDFFEGNLKIKCTGFFM
SLKELSLLQKEFEELSVSLVEKRKDLKKKTSEFTEIYDLYEQLNSSII Run BLAST on NCBI transcript from alignment at scaffold_209:50575..51381 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052060 ID=TCONS_00052060|Name=TCONS_00052060|organism=Clytia hemisphaerica|type=transcript|length=807bp|location=Sequence derived from alignment at scaffold_209:50575..51381 (Clytia hemisphaerica)
GGAAATCTACCTTTCTATACCAAAGAAGATGAGGTTCAAGACATTTTGAG
ACAATTTACTACAAATCTTTCCATCACTGAAATGTTTATATGGAAGAATA
GAAATACACCAACTAATGTTCCAACAGAGGCTGCTTTTGTAACATTACAA
ACTAATGAAATACGGGATGAATTGGTGAACAATTATCGCTCAAGATATCC
AGACCGCTCAACAAGATTTCCTTTCCGAAATAAGCACGGCAATGAGACAA
ATATTTACATTACACTGTGTTATATCCAGCcagataaaaaatataaagga
cCAAAATCTTTCcagaaaaccaaagaaacctCCAAAGCTGCTCCTATCTC
GACACCGTTAATACAAACAAAGGATGTCTGTAAACAAGATGAGTTTATCC
AAGTTAACAGCCAACAAGAAAACAGTCTCTCAAATGGAAATGAACAACTT
AAAAAGACTGATATAGCGAATGAAGAGAAAGCTCCATTTTCAGCACTGGA
CAAATTGAAATCCGAAATTGAAAAAGAGAGATGCCAGCTGTTAGAAAAGA
TAGACTTTTTTGAAGGCAATTTGAAAATCAAGTGTACTGGATTTTTCATG
TCCCTTAAGGAACTTTCTTTGCTTCAAAAGGAATTTGAGGAACTTTCGGT
ATCTTTGGTCGAAAAACGAAAAGATTTAAAGAAGAAAACGAGTGAATTTA
CAGAGATTTATGACCTCTATGAGCAATTAAATAGCTCAATAATTTGACAT
TGCTGCAACTCATGCTTGGCTGTTTTAGTATGATCTTagtgttctttttt
ttttttt Coding sequence (CDS) from alignment at scaffold_209:50575..51381 >TCONS_00052060 ID=TCONS_00052060|Name=TCONS_00052060|organism=Clytia hemisphaerica|type=CDS|length=747bp|location=Sequence derived from alignment at scaffold_209:50575..51381 (Clytia hemisphaerica)
GGAAATCTACCTTTCTATACCAAAGAAGATGAGGTTCAAGACATTTTGAG
ACAATTTACTACAAATCTTTCCATCACTGAAATGTTTATATGGAAGAATA
GAAATACACCAACTAATGTTCCAACAGAGGCTGCTTTTGTAACATTACAA
ACTAATGAAATACGGGATGAATTGGTGAACAATTATCGCTCAAGATATCC
AGACCGCTCAACAAGATTTCCTTTCCGAAATAAGCACGGCAATGAGACAA
ATATTTACATTACACTGTGTTATATCCAGCcagataaaaaatataaagga
cCAAAATCTTTCcagaaaaccaaagaaacctCCAAAGCTGCTCCTATCTC
GACACCGTTAATACAAACAAAGGATGTCTGTAAACAAGATGAGTTTATCC
AAGTTAACAGCCAACAAGAAAACAGTCTCTCAAATGGAAATGAACAACTT
AAAAAGACTGATATAGCGAATGAAGAGAAAGCTCCATTTTCAGCACTGGA
CAAATTGAAATCCGAAATTGAAAAAGAGAGATGCCAGCTGTTAGAAAAGA
TAGACTTTTTTGAAGGCAATTTGAAAATCAAGTGTACTGGATTTTTCATG
TCCCTTAAGGAACTTTCTTTGCTTCAAAAGGAATTTGAGGAACTTTCGGT
ATCTTTGGTCGAAAAACGAAAAGATTTAAAGAAGAAAACGAGTGAATTTA
CAGAGATTTATGACCTCTATGAGCAATTAAATAGCTCAATAATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052060-exon-scaffold_209-1491911889:50575..51381 | TCONS_00052060-exon-scaffold_209-1491911889:50575..51381 | Clytia hemisphaerica | exon |
| TCONS_00052060-exon-scaffold_209-1510915933:50575..51381 | TCONS_00052060-exon-scaffold_209-1510915933:50575..51381 | Clytia hemisphaerica | exon |
| TCONS_00052060-exon-scaffold_209-1575043694:50575..51381 | TCONS_00052060-exon-scaffold_209-1575043694:50575..51381 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_209 | supercontig | scaffold_209:50575..51381 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000504 | RRM_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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