TCONS_00052058 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052058
Unique NameTCONS_00052058
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length299

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052058 ID=TCONS_00052058|Name=TCONS_00052058|organism=Clytia hemisphaerica|type=transcript|length=299bp
TTCCAAAAAGCTACTAATTGCTGCTGTTTTCCTAGCatagtaaaaaaatt
aaatttataaaattaaTGGTTTTTCGTTTTTCTAATGAACTCACCTAAAT
AGTACAACAATACCTCCTTTAGATATACAACTACAATTCTTGCAAAATTA
TCTTTAATGTTAAACAAGTGAAATAAACAATATTATGAACAAGTGTCATT
AAAAACTGTATGCCAGTCAGTCCAACTCTATAACAATAATTGCAACATTA
CTTTTAGAAATAACGTTTCTAATCTTCCCATTAAAAAGGCTAGCTACTG
Run BLAST on NCBI

transcript from alignment at scaffold_209:16997..17295

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052058 ID=TCONS_00052058|Name=TCONS_00052058|organism=Clytia hemisphaerica|type=transcript|length=299bp|location=Sequence derived from alignment at scaffold_209:16997..17295 (Clytia hemisphaerica)
CAGTAGCTAGCCTTTTTAATGGGAAGATTAGAAACGTTATTTCTAAAAGT
AATGTTGCAATTATTGTTATAGAGTTGGACTGACTGGCATACAGTTTTTA
ATGACACTTGTTCATAATATTGTTTATTTCACTTGTTTAACATTAAAGAT
AATTTTGCAAGAATTGTAGTTGTATATCTAAAGGAGGTATTGTTGTACTA
TTTAGGTGAGTTCATTAGAAAAACGAAAAACCAttaattttataaattta
atttttttactatGCTAGGAAAACAGCAGCAATTAGTAGCTTTTTGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032967XLOC_032967Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052058-exon-scaffold_209-1491911889:16997..17295TCONS_00052058-exon-scaffold_209-1491911889:16997..17295Clytia hemisphaericaexon
TCONS_00052058-exon-scaffold_209-1510915933:16997..17295TCONS_00052058-exon-scaffold_209-1510915933:16997..17295Clytia hemisphaericaexon
TCONS_00052058-exon-scaffold_209-1575043694:16997..17295TCONS_00052058-exon-scaffold_209-1575043694:16997..17295Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_209supercontigscaffold_209:16997..17295 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.57434	1.91904	2.22819	0	0.530772	0	0.506016	0	1.32667	0	1.19626	0.524251	1.04704	0.543683	0	0.959359	0	1.5142	0	0	1.52216	3.34106	2.70766	3.28221	0	0	2.69842	2.87982	3.93164	1.33524
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052058 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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