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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052052 ID=TCONS_00052052|Name=TCONS_00052052|organism=Clytia hemisphaerica|type=transcript|length=1434bp
CTTTTTTGGTTACTAATACAGCCCTACCAAACTGTATTGTTGGTACCAAC
CTCATACGTTGCTTGTATCAACACCAATCAAAGGACCATTTCTCACACGA
CTTAGCTGGTGCAGTAGGGATGATGCTGGAAGGCAAGGCAGTGATCAATG
CCATGGAAGGCGAAGTGATGGAGATGAATGTGTTTTGCGGTGAATCAATC
GTGGTGGAACCGGGAGAATGTCGAAAAGTTCCTTGTTCAGTTCCTGACAT
CCATAAAGAAAGGGGAACTCCCATGTTGTTCGAACCCATAACAAGTGAAA
AGTCTTTGCTTGAGTACATGGAATGCTTGGTATCCAGTAAGAAAGATTTT
GAAGTCCTAGCCATGAACTGCACAGATCATCCAATTACAATACATCCAAA
GGAAATCGTTGGTCGGCTCTGCTCAATTTCTGTTAACTTACCCAGAGTGA
ATATGGTCGATGTTGAAGCGGATAAAGGAAAATGGCAACCTGCAGTAAAT
ATTGACCACCTTGATCAAGAAAAACAAGAGGCAGTGGAAAAGGTCCTGTA
TGAATATTGTGACGTCTTCTCAAAGGAAAAATCAGACATAGGGGAGATGA
AGGACTTCTACATGGACATCCAACTCACAGACAGTAAACCAATTCATGTT
CCTTACAGACGCATCCCAAAACAAATGTACAAAACCGTGAAAGACTACAT
GGATGACTTGATAGCAAATGGCTGGATTAAAACATCTGAATCCCCATACA
GTAGTCCTATTGTGTGCGCTAAAAAGAAAGATGGTTCGCTGCGACTGTGT
ATCGACTACCGTGCATTAAACAATGTCACCATACCTGATAGAATGCCAAT
TCCACGAATTGATGACATCCTGGACAATCTTGgtggtcaaaaatatttca
gcaCACTTGACTTGACAAAAGCTTACCATCAGGGTTTCATGGAAGAATCA
GCTCGTAAATAAACAGCATTTTCCACGCCATGGGGATTGTATGAGTGGTT
GAGAATTCCTATGGGTCTGAAGAATGCACCTCCAAAATTCCAGAGGAAGA
TCAGCTCAAATCTAGAAGAAGCATATGAAACGTCTGGATTACCGTACCTA
GATGATATCATCAGTTATGGCAGCGATTTTGAAGATGCACTAGCTAACCT
AATAATACTTCTCCAGAAATGTAGAAAGCACTCAATGAAACTGAATCCAG
CCAAATGTGAAGTGTTCAAATCAGAAATAAAGTACTTGGGAAtgatggtc
acaaaatggatcCAGCATCCAGTGAGGTAATCAATAAACTGAAATGTCCG
CCAACAAACATCGGAGGATTACGCAGCCTCCTGGGATTCATCAATTGCTA
CCGGTCATCTATCAAGAACTTTTCCAGACGTGTGAAGCCACTGTATGATT
TGCTGGTAACTGAGACACCTGATAAGAAACAAAG Run BLAST on NCBI protein sequence of TCONS_00052052-protein >TCONS_00052052-protein ID=TCONS_00052052-protein|Name=TCONS_00052052-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
FLVTNTALPNCIVGTNLIRCLYQHQSKDHFSHDLAGAVGMMLEGKAVINA
MEGEVMEMNVFCGESIVVEPGECRKVPCSVPDIHKERGTPMLFEPITSEK
SLLEYMECLVSSKKDFEVLAMNCTDHPITIHPKEIVGRLCSISVNLPRVN
MVDVEADKGKWQPAVNIDHLDQEKQEAVEKVLYEYCDVFSKEKSDIGEMK
DFYMDIQLTDSKPIHVPYRRIPKQMYKTVKDYMDDLIANGWIKTSESPYS
SPIVCAKKKDGSLRLCIDYRALNNVTIPDRMPIPRIDDILDNLGGQKYFS
TLDLTKAYHQGFMEESARK Run BLAST on NCBI transcript from alignment at scaffold_209:109633..111181+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052052 ID=TCONS_00052052|Name=TCONS_00052052|organism=Clytia hemisphaerica|type=transcript|length=1549bp|location=Sequence derived from alignment at scaffold_209:109633..111181+ (Clytia hemisphaerica)
CTTTTTTGGTTACTAATACAGCCCTACCAAACTGTATTGTTGGTACCAAC
CTCATACGTTGCTTGTATCAACACCAATCAAAGGACCATTTCTCACACGA
CTTAGCTGGTGCAGTAGGGATGATGCTGGAAGGCAAGGCAGTGATCAATG
CCATGGAAGGCGAAGTGATGGAGATGAATGTGTTTTGCGGTGAATCAATC
GTGGTGGAACCGGGAGAATGTCGAAAAGTTCCTTGTTCAGTTCCTGACAT
CCATAAAGAAAGGGGAACTCCCATGTTGTTCGAACCCATAACAAGTGAAA
AGTCTTTGCTTGAGTACATGGAATGCTTGGTATCCAGTAAGAAAGATTTT
GAAGTCCTAGCCATGAACTGCACAGATCATCCAATTACAATACATCCAAA
GGAAATCGTTGGTCGGCTCTGCTCAATTTCTGTTAACTTACCCAGAGTGA
ATATGGTCGATGTTGAAGCGGATAAAGGAAAATGGCAACCTGCAGTAAAT
ATTGACCACCTTGATCAAGAAAAACAAGAGGCAGTGGAAAAGGTCCTGTA
TGAATATTGTGACGTCTTCTCAAAGGAAAAATCAGACATAGGGGAGATGA
AGGACTTCTACATGGACATCCAACTCACAGACAGTAAACCAATTCATGTT
CCATACAGACGCATCCCAAAACAAATGTACAAAACCGTGAAAGACTACAT
GGATGACTTGATAGCAAATGGCTGGATTAAAACATCTGAATCCCCATACA
GTAGTCCTNCATGTTCCTTACAGACGCATCCCAAAACAAATGTACAAAAC
CGTGAAAGACTACATGGATGACTTGATAGCAAATGGCTGGATTAAAACAT
CTGAATCCCCATACAGTAGTCCTATTGTGTGCGCTAAAAAGAAAGATGGT
TCGCTGCGACTGTGTATCGACTACCGTGCATTAAACAATGTCACCATACC
TGATAGAATGCCAATTCCACGAATTGATGACATCCTGGACAATCTTGgtg
gtcaaaaatatttcagcaCACTTGACTTGACAAAAGCTTACCATCAGGGT
TTCATGGAAGAATCAGCTCGTAAATAAACAGCATTTTCCACGCCATGGGG
ATTGTATGAGTGGTTGAGAATTCCTATGGGTCTGAAGAATGCACCTCCAA
AATTCCAGAGGAAGATCAGCTCAAATCTAGAAGAAGCATATGAAACGTCT
GGATTACCGTACCTAGATGATATCATCAGTTATGGCAGCGATTTTGAAGA
TGCACTAGCTAACCTAATAATACTTCTCCAGAAATGTAGAAAGCACTCAA
TGAAACTGAATCCAGCCAAATGTGAAGTGTTCAAATCAGAAATAAAGTAC
TTGGGAAtgatggtcacaaaatggatcCAGCATCCAGTGAGGTAATCAAT
AAACTGAAATGTCCGCCAACAAACATCGGAGGATTACGCAGCCTCCTGGG
ATTCATCAATTGCTACCGGTCATCTATCAAGAACTTTTCCAGACGTGTGA
AGCCACTGTATGATTTGCTGGTAACTGAGACACCTGATAAGAAACAAAG Coding sequence (CDS) from alignment at scaffold_209:109633..111181+ >TCONS_00052052 ID=TCONS_00052052|Name=TCONS_00052052|organism=Clytia hemisphaerica|type=CDS|length=1920bp|location=Sequence derived from alignment at scaffold_209:109633..111181+ (Clytia hemisphaerica)
TTTTTGGTTACTAATACAGCCCTACCAAACTGTATTGTTGGTACCAACCT
CATACGTTGCTTGTATCAACACCAATCAAAGGACCATTTCTCACACGACT
TAGCTGGTGCAGTAGGGATGATGCTGGAAGGCAAGGCAGTGATCAATGCC
ATGGAAGGCGAAGTGATGGAGATGAATGTGTTTTGCGGTGAATCAATCGT
GGTGGAACCGGGAGAATGTCGAAAAGTTCCTTGTTCAGTTCCTGACATCC
ATAAAGAAAGGGGAACTCCCATGTTGTTCGAACCCATAACAAGTGAAAAG
TCTTTGCTTGAGTACATGGAATGCTTGGTATCCAGTAAGAAAGATTTTGA
AGTCCTAGCCATGAACTGCACAGATCATCCAATTACAATACATCCAAAGG
AAATCGTTGGTCGGCTCTGCTCAATTTCTGTTAACTTACCCAGAGTGAAT
ATGGTCGATGTTGAAGCGGATAAAGGAAAATGGCAACCTGCAGTAAATAT
TGACCACCTTGATCAAGAAAAACAAGAGGCAGTGGAAAAGGTCCTGTATG
AATATTGTGACGTCTTCTCAAAGGAAAAATCAGACATAGGGGAGATGAAG
GACTTCTACATGGACATCCAACTCACAGACAGTAAACCAATTCATGTTCC
TTACAGACGCATCCCAAAACAAATGTACAAAACCGTGAAAGACTACATGG
ATGACTTGATAGCAAATGGCTGGATTAAAACATCTGAATCCCCATACAGT
AGTCCTATTGTGTGCGCTAAAAAGAAAGATGGTTCGCTGCGACTGTGTAT
CGACTACCGTGCATTAAACAATGTCACCATACCTGATAGAATGCCAATTC
CACGAATTGATGACATCCTGGACAATCTTGgtggtcaaaaatatttcagc
aCACTTGACTTGACAAAAGCTTACCATCAGGGTTTCATGGAAGAATCAGC
TCGTAAATAATTTTTGGTTACTAATACAGCCCTACCAAACTGTATTGTTG
GTACCAACCTCATACGTTGCTTGTATCAACACCAATCAAAGGACCATTTC
TCACACGACTTAGCTGGTGCAGTAGGGATGATGCTGGAAGGCAAGGCAGT
GATCAATGCCATGGAAGGCGAAGTGATGGAGATGAATGTGTTTTGCGGTG
AATCAATCGTGGTGGAACCGGGAGAATGTCGAAAAGTTCCTTGTTCAGTT
CCTGACATCCATAAAGAAAGGGGAACTCCCATGTTGTTCGAACCCATAAC
AAGTGAAAAGTCTTTGCTTGAGTACATGGAATGCTTGGTATCCAGTAAGA
AAGATTTTGAAGTCCTAGCCATGAACTGCACAGATCATCCAATTACAATA
CATCCAAAGGAAATCGTTGGTCGGCTCTGCTCAATTTCTGTTAACTTACC
CAGAGTGAATATGGTCGATGTTGAAGCGGATAAAGGAAAATGGCAACCTG
CAGTAAATATTGACCACCTTGATCAAGAAAAACAAGAGGCAGTGGAAAAG
GTCCTGTATGAATATTGTGACGTCTTCTCAAAGGAAAAATCAGACATAGG
GGAGATGAAGGACTTCTACATGGACATCCAACTCACAGACAGTAAACCAA
TTCATGTTCCTTACAGACGCATCCCAAAACAAATGTACAAAACCGTGAAA
GACTACATGGATGACTTGATAGCAAATGGCTGGATTAAAACATCTGAATC
CCCATACAGTAGTCCTATTGTGTGCGCTAAAAAGAAAGATGGTTCGCTGC
GACTGTGTATCGACTACCGTGCATTAAACAATGTCACCATACCTGATAGA
ATGCCAATTCCACGAATTGATGACATCCTGGACAATCTTGgtggtcaaaa
atatttcagcaCACTTGACTTGACAAAAGCTTACCATCAGGGTTTCATGG
AAGAATCAGCTCGTAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052052-exon-scaffold_209-1491911889:109633..110277 | TCONS_00052052-exon-scaffold_209-1491911889:109633..110277 | Clytia hemisphaerica | exon |
| TCONS_00052052-exon-scaffold_209-1510915933:109633..110277 | TCONS_00052052-exon-scaffold_209-1510915933:109633..110277 | Clytia hemisphaerica | exon |
| TCONS_00052052-exon-scaffold_209-1575043694:109633..110277 | TCONS_00052052-exon-scaffold_209-1575043694:109633..110277 | Clytia hemisphaerica | exon |
| TCONS_00052052-exon-scaffold_209-1491911889:110393..111181 | TCONS_00052052-exon-scaffold_209-1491911889:110393..111181 | Clytia hemisphaerica | exon |
| TCONS_00052052-exon-scaffold_209-1510915933:110393..111181 | TCONS_00052052-exon-scaffold_209-1510915933:110393..111181 | Clytia hemisphaerica | exon |
| TCONS_00052052-exon-scaffold_209-1575043694:110393..111181 | TCONS_00052052-exon-scaffold_209-1575043694:110393..111181 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_209 | supercontig | scaffold_209:109633..111181 + |
Blast
The following BLAST results are available for this feature:
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