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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052051 ID=TCONS_00052051|Name=TCONS_00052051|organism=Clytia hemisphaerica|type=transcript|length=615bp
TACCTTGGAGAGGAGGGACTGGATGATGGAGGTATCGCAAGAGAGTTCTA
CTCAGAAGCCTTTCAACAAGTCCGCAGACAATTCTTCAGTGACGACACAC
AGGAGCCAGCAGTTGGACTCATGTGCCTCAATGACATGGAGATGATTGGT
CATCTTTTTGTAGCAAGCCTTGTCCATGATGGTCCAGGTCCTGGCTTTTT
ATCCCCCTGGATTTACGATTACATTGTTGGTGGTTTTGAGACAGTTCCTT
TACCAAAGGAGTTACGAAATCCTATTTACAAACAACTTTACTGTGCAGAA
GAATCTTTCAATGATCTCTTACAATCCGACGCTGGTATGGATATGCTTAG
TGATATTGGCTTCCGAGGAAACCCTATGACTATCGAAATCAAATCTAAAG
AAGctattttaagGTCGATGTTCATCAAAGAAAAGACAGAAATCGTTAAT
CTAGTAAATCAAATAACGGAAGGCATGAAATTTTACGATGCACTGCCAAT
CATCAAGAGTAACAAGGAAATATTTCGGCCTGTTTTTACGAACAGTACCC
TTTTCGAATGGACATACGAGACTGTCTACCCGATGTTGGTACCAGATTAT
CGTGGTGAAATTGGA Run BLAST on NCBI protein sequence of TCONS_00052051-protein >TCONS_00052051-protein ID=TCONS_00052051-protein|Name=TCONS_00052051-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
YLGEEGLDDGGIAREFYSEAFQQVRRQFFSDDTQEPAVGLMCLNDMEMIG
HLFVASLVHDGPGPGFLSPWIYDYIVGGFETVPLPKELRNPIYKQLYCAE
ESFNDLLQSDAGMDMLSDIGFRGNPMTIEIKSKEAILRSMFIKEKTEIVN
LVNQITEGMKFYDALPIIKSNKEIFRPVFTNSTLFEWTYETVYPMLVPDY
RGEIG Run BLAST on NCBI transcript from alignment at scaffold_209:85239..88397+ Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052051 ID=TCONS_00052051|Name=TCONS_00052051|organism=Clytia hemisphaerica|type=transcript|length=3159bp|location=Sequence derived from alignment at scaffold_209:85239..88397+ (Clytia hemisphaerica)
TACCTTGGAGAGGAGGGACTGGATGATGGAGGTATCGCAAGAGAGTTCTA
CTCAGGTAAAtgattattatttttaattgtaTTGGCATTTTAAGAGATAC
agaatttcaagttttgttgaaataaaaaattgtcatgaatattgccctta
tgtattacaatgaggtgaatacagtcgctctcatattgttttctgaccag
ccaccagaaccgttccGAGCTCTACCGAGTGGCAATTGAGTCATCAGGTT
Ccacatggacccgtagctcaatggtagagcaaatgcccgcgaatggcatg
gttgtgagttcgagtctcgccggatcccttggttttccaacggttctggt
ggctggtcagaaaacaatatgagagcgactgtattcacctcattgtaaaa
aattgtcaaaattcaaataaaatgtcaattttggctaataaaatcttttg
aaaggttttcaaactttttcgtaataatattttatgttccaaaaaaccaa
aattctttgcattttgacgattttttatttttcgatcattttgccttatt
tccttattATCTGTATATCTATATATCCTTAATGATTTTTACGAACTTTT
TTTGGTTGCCATGGTAACTAATGACGTCAATTTCCATGGCAACGGGAGGT
TGCCGAAAGCCTcgcctctcaaattttgaatttctacATATGAGGAACAA
taatcaatcataaaatccctttccACAGGCTCCTGCACACGAGAAGACAT
GGTGGCCTCTACtacatcaaaaaacaacaaaaaacagccttttttaaTGT
CACCCAGCCAGACATCTAAGGCCATATCTTtagattgaataaatattttt
cagatttattagttttttttgtggAAAAGTGCTTTATTATGAAACATTCT
TTGTTTGTAAGCATaaagtttataagcatattcaggctgaaatttgaaaa
gaatttaagcataatgctaagcatatcTCCATATCTGAGATGCCAAAAAC
TTTGGGAAATCTTTACTTCTTTCAGAAATCAACTAAATTCAGAGGACTTT
TCATAATAATAAACGATTTTTGACGTTTCTTATTCAGACCAATTTATCAA
CTAAAATcgttggaaatccaaaaaaaatcaaggaaaattCCATGGTCTAA
TATAAGTATATTTTGAGGTTGAAAACGAAATTTTGCCAAGCATATTGAGC
CACAGCTCGATTTTtctgtatgcttataaaaagagaaTGTAATTCCAGTC
ATGATAAAAAGTGTGAACACGTGATTTCTTGCACAAAGTACCTTTAAACC
GGGGTACttgatttcaataaaaatttctgCCCTCATATCAAATTTTCTTC
CTGTAAACCCATTACAGTGTATTTGGTTTTTTCAGCTTTTAACAATCTTT
CTAAAACTTAACTTTAGAAGCCTTTCAACAAGTCCGCAGACAATTCTTCA
GTGACGACACACAGGAGCCAGCAGTTGGACTCATGTGCCTCAATGACATG
GAGATGATTGGTCATCTTTTTGTAGCAAGCCTTGTCCATGATGGTCCAGG
TCCTGGCTTTTTATCCCCCTGGATTTACGATTACATTGTTGGTGGTTTTG
AGACAGTTCCTTTACCAAAGGAGTTACGAAATCCTATTTACAAACAAGTA
AGAATATGATTGTAAACTTTATGTGTACTCAaataaagtcaatttttcaa
atgtatTTCTCTTTATACTCAGTGAATAAATCGAATTTTTCTTATTGAAA
TACTCATTCTATTTAATCACTTAGAATTATAGAAAttatgggtgctgggt
atgtgcggacctTAGGGGTCGGTTTTTTTACCTTCCCAAGTCTCTTTTAG
ggttacaaaaacaacaaagtcaaaataatctctctaagggtcagcgGAAT
TTTTAACTTCCAAAGCTTAAGGATAAAAAAAACTAggaaaagttacaaaa
aacttttccgtaggaaatttttcgaaaatcgtctctctaagggtcgtttt
tttaccacttttgtctctctaagggtcactttttcgccaaaatttagggt
cggtttttggaggtcgGGTCCGCACATTACCAATAGTACACTGGGTAAAA
GAACCATGAATCCTTGCTCTTATTTTTTGCTTGTTAATACCCTTTTTGCT
ACTAAAAAGACATTTCAGGCTGATTTGCTTTaaaagttttctcatttttt
taacCAATTTGAGTCTCATTGAtcttcaaaaacttttcaaatcaaattaa
cAACAAAAAGTGTTCCTTTTTAGCTTTACTGTGCAGAAGAATCTTTCAAT
GATCTCTTACAATCCGACGCTGGTATGGATATGCTTAGTGATATTGGCTT
CCGAGGAAACCCTATGACTATCGAAATCAAATCTAAAGAAGctattttaa
ggtattttttaaaaatggatTTATAACGAAATAGACCTGCATACACTTTG
ATTTTGTTGCTAATTAATGGGCTTTAACCCTATCCAAACTACCTTTAAGT
GGACCTAAAATGCTCACCTTCTGCATAACTACTGATCTGATCTTgctaaa
attttttcaagcaagctTCTATTATTAATACCTACCACTGGTCAAAgttt
caagtcaatagcattttccAATATTGAGATATAAGAATTTAGGACtaatt
taggcaaaaaaggcaaatttgggctggtctgtaaagtacacGCCTATGGC
AGGTGGGCAAAATTGACCTTGTGCCCCATATATATATGCCAAATGGAGTT
CAAGTTTAcctaatttttacatttttagtaAGTGATCAATATACTACCGC
AAGGGAACTTTTTGATGAGAACTAATTTTGAACCAGTTTTTTTCgattag
gacaaaaaagggtGCGGTTTACTCGACGCATTGGTCAAAGACCGAAATCC
CGGGTGATGCCATTCGCACTCGATGGGATAAtgtgtctatttttatttct
ttatcagGTCGATGTTCATCAAAGAAAAGACAGAAATCGTTAATCTAGTA
AATCAAATAACGGAAGGCATGAAATTTTACGATGCACTGCCAATCATCAA
GAGTAACAAGGAAATATTTCGGCCTGTTTTTACGAACAGTACCCTTTTCG
AATGGACATACGAGACTGTCTACCCGATGTTGGTACCAGATTATCGTGGT
GAAATTGGA Coding sequence (CDS) from alignment at scaffold_209:85239..88397+ >TCONS_00052051 ID=TCONS_00052051|Name=TCONS_00052051|organism=Clytia hemisphaerica|type=CDS|length=2460bp|location=Sequence derived from alignment at scaffold_209:85239..88397+ (Clytia hemisphaerica)
TACCTTGGAGAGGAGGGACTGGATGATGGAGGTATCGCAAGAGAGTTCTA
CTCAGAAGCCTTTCAACAAGTCCGCAGACAATTCTTCAGTGACGACACAC
AGGAGCCAGCAGTTGGACTCATGTGCCTCAATGACATGGAGATGATTGGT
CATCTTTTTGTAGCAAGCCTTGTCCATGATGGTCCAGGTCCTGGCTTTTT
ATCCCCCTGGATTTACGATTACATTGTTGGTGGTTTTGAGACAGTTCCTT
TACCAAAGGAGTTACGAAATCCTATTTACAAACAACTTTACTGTGCAGAA
GAATCTTTCAATGATCTCTTACAATCCGACGCTGGTATGGATATGCTTAG
TGATATTGGCTTCCGAGGAAACCCTATGACTATCGAAATCAAATCTAAAG
AAGctattttaagGTCGATGTTCATCAAAGAAAAGACAGAAATCGTTAAT
CTAGTAAATCAAATAACGGAAGGCATGAAATTTTACGATGCACTGCCAAT
CATCAAGAGTAACAAGGAAATATTTCGGCCTGTTTTTACGAACAGTACCC
TTTTCGAATGGACATACGAGACTGTCTACCCGATGTTGGTACCAGATTAT
CGTGGTGAAATTGGATACCTTGGAGAGGAGGGACTGGATGATGGAGGTAT
CGCAAGAGAGTTCTACTCAGAAGCCTTTCAACAAGTCCGCAGACAATTCT
TCAGTGACGACACACAGGAGCCAGCAGTTGGACTCATGTGCCTCAATGAC
ATGGAGATGATTGGTCATCTTTTTGTAGCAAGCCTTGTCCATGATGGTCC
AGGTCCTGGCTTTTTATCCCCCTGGATTTACGATTACATTGTTGGTGGTT
TTGAGACAGTTCCTTTACCAAAGGAGTTACGAAATCCTATTTACAAACAA
CTTTACTGTGCAGAAGAATCTTTCAATGATCTCTTACAATCCGACGCTGG
TATGGATATGCTTAGTGATATTGGCTTCCGAGGAAACCCTATGACTATCG
AAATCAAATCTAAAGAAGctattttaagGTCGATGTTCATCAAAGAAAAG
ACAGAAATCGTTAATCTAGTAAATCAAATAACGGAAGGCATGAAATTTTA
CGATGCACTGCCAATCATCAAGAGTAACAAGGAAATATTTCGGCCTGTTT
TTACGAACAGTACCCTTTTCGAATGGACATACGAGACTGTCTACCCGATG
TTGGTACCAGATTATCGTGGTGAAATTGGATACCTTGGAGAGGAGGGACT
GGATGATGGAGGTATCGCAAGAGAGTTCTACTCAGAAGCCTTTCAACAAG
TCCGCAGACAATTCTTCAGTGACGACACACAGGAGCCAGCAGTTGGACTC
ATGTGCCTCAATGACATGGAGATGATTGGTCATCTTTTTGTAGCAAGCCT
TGTCCATGATGGTCCAGGTCCTGGCTTTTTATCCCCCTGGATTTACGATT
ACATTGTTGGTGGTTTTGAGACAGTTCCTTTACCAAAGGAGTTACGAAAT
CCTATTTACAAACAACTTTACTGTGCAGAAGAATCTTTCAATGATCTCTT
ACAATCCGACGCTGGTATGGATATGCTTAGTGATATTGGCTTCCGAGGAA
ACCCTATGACTATCGAAATCAAATCTAAAGAAGctattttaagGTCGATG
TTCATCAAAGAAAAGACAGAAATCGTTAATCTAGTAAATCAAATAACGGA
AGGCATGAAATTTTACGATGCACTGCCAATCATCAAGAGTAACAAGGAAA
TATTTCGGCCTGTTTTTACGAACAGTACCCTTTTCGAATGGACATACGAG
ACTGTCTACCCGATGTTGGTACCAGATTATCGTGGTGAAATTGGATACCT
TGGAGAGGAGGGACTGGATGATGGAGGTATCGCAAGAGAGTTCTACTCAG
AAGCCTTTCAACAAGTCCGCAGACAATTCTTCAGTGACGACACACAGGAG
CCAGCAGTTGGACTCATGTGCCTCAATGACATGGAGATGATTGGTCATCT
TTTTGTAGCAAGCCTTGTCCATGATGGTCCAGGTCCTGGCTTTTTATCCC
CCTGGATTTACGATTACATTGTTGGTGGTTTTGAGACAGTTCCTTTACCA
AAGGAGTTACGAAATCCTATTTACAAACAACTTTACTGTGCAGAAGAATC
TTTCAATGATCTCTTACAATCCGACGCTGGTATGGATATGCTTAGTGATA
TTGGCTTCCGAGGAAACCCTATGACTATCGAAATCAAATCTAAAGAAGct
attttaagGTCGATGTTCATCAAAGAAAAGACAGAAATCGTTAATCTAGT
AAATCAAATAACGGAAGGCATGAAATTTTACGATGCACTGCCAATCATCA
AGAGTAACAAGGAAATATTTCGGCCTGTTTTTACGAACAGTACCCTTTTC
GAATGGACATACGAGACTGTCTACCCGATGTTGGTACCAGATTATCGTGG
TGAAATTGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052051-exon-scaffold_209-1491911889:85239..85293 | TCONS_00052051-exon-scaffold_209-1491911889:85239..85293 | Clytia hemisphaerica | exon |
| TCONS_00052051-exon-scaffold_209-1510915933:85239..85293 | TCONS_00052051-exon-scaffold_209-1510915933:85239..85293 | Clytia hemisphaerica | exon |
| TCONS_00052051-exon-scaffold_209-1575043694:85239..85293 | TCONS_00052051-exon-scaffold_209-1575043694:85239..85293 | Clytia hemisphaerica | exon |
| TCONS_00052051-exon-scaffold_209-1491911889:86656..86885 | TCONS_00052051-exon-scaffold_209-1491911889:86656..86885 | Clytia hemisphaerica | exon |
| TCONS_00052051-exon-scaffold_209-1510915933:86656..86885 | TCONS_00052051-exon-scaffold_209-1510915933:86656..86885 | Clytia hemisphaerica | exon |
| TCONS_00052051-exon-scaffold_209-1575043694:86656..86885 | TCONS_00052051-exon-scaffold_209-1575043694:86656..86885 | Clytia hemisphaerica | exon |
| TCONS_00052051-exon-scaffold_209-1491911889:87512..87639 | TCONS_00052051-exon-scaffold_209-1491911889:87512..87639 | Clytia hemisphaerica | exon |
| TCONS_00052051-exon-scaffold_209-1510915933:87512..87639 | TCONS_00052051-exon-scaffold_209-1510915933:87512..87639 | Clytia hemisphaerica | exon |
| TCONS_00052051-exon-scaffold_209-1575043694:87512..87639 | TCONS_00052051-exon-scaffold_209-1575043694:87512..87639 | Clytia hemisphaerica | exon |
| TCONS_00052051-exon-scaffold_209-1491911889:88196..88397 | TCONS_00052051-exon-scaffold_209-1491911889:88196..88397 | Clytia hemisphaerica | exon |
| TCONS_00052051-exon-scaffold_209-1510915933:88196..88397 | TCONS_00052051-exon-scaffold_209-1510915933:88196..88397 | Clytia hemisphaerica | exon |
| TCONS_00052051-exon-scaffold_209-1575043694:88196..88397 | TCONS_00052051-exon-scaffold_209-1575043694:88196..88397 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_209 | supercontig | scaffold_209:85239..88397 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000569 | HECT_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004842 | ubiquitin-protein transferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0004842 |
ubiquitin-protein transferase activity |
Blast
The following BLAST results are available for this feature:
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