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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051975 ID=TCONS_00051975|Name=TCONS_00051975|organism=Clytia hemisphaerica|type=transcript|length=1743bp
gaaatgagTTGACAAAGCCTTgatatgaaaaataaagtatAGAAAATAGC
CTGCCAAATGTGAAGTGATATGTACAAAAAATAACTCCAAATGTTCAATG
TAAATGTAAATGTTCAAAACTGGATGTACGAAACTTGATCTatcttaagt
ggataaattttgactgagattaaatttggcaatttggcgaatttggccaa
aatccgccaaattaaattctagccaaaatttccaaattcggcaatttgtc
aaattaaatccccgccaaatttttcgaaatttccctttcgccaaattaaa
tcctcgccaaaattgagagaaaatcatgttttttatacagaaaattattt
ttgcctCTCTTTAAGCCAACCGTATACATTTTAACAAACTACTTTTACCT
TTATAACCGATCTTATGTTACacgtattattttttctattctgAGCTTCA
ACAAAACACCTTaatagaaaacattttttttgtctttcgccaaattaaat
ccacgccaaattttacaaaattgagcattcaccaaattaaatccccgcca
aaagtAGCATTTTGACCATTCACCAAATTAAAtacacgccaaaatttatc
cacttaaggtatattGATTTCAAATGTTCATTGATTTCTTGAATATATAA
Aacgtataacaagtgctttgactaaaaaaatcgagcgacctaaaaaaaag
aaaaatttccccctactataacgAGATACGTgtataataatttttcttaa
ttgcttttcttataataaatgaaaatgatGTCTTTTGCACGTTCGTGTAA
CCCCTGGAAGGGTTCAAATCAAACCAGAATACTGcgtcaaaagtttttta
ttttctaattaaATTTTCGACCCTTTAGGTATCATCTGTgtaaaatttca
tgcttttatgcAACacgctccatcccaccaacacaagaaaaaaagtgcgt
atCCAATGGTTtccttttttgtttcatggaaCAAAAGGAAAATCACTTGG
TTTCGGCTTGATATAAGATTACTACCATACTTCATACGTGAAAAATTGTC
CATTAAATCAATATGTAGCTCCTTTCTGTATCACTTGCTTGGCCACATTG
GAGTCTTCATGACGAGCTTGATATTTCTTTCAAAACGTCTTCCGGAATAA
AATCtgacattcgattttttttgaagttatCGACCATTTTTTCAATGAAC
ATGTCACATTTGAATAGATTGTCAAAACGATGCGCGATATTATCTAAAAA
CACTTGACCAAAGCCATGCAATAAATTCATTTCAAGCACGAAATAACAAG
GAAGATAACCAACTTTTAAAGCATCTAATAATCTCTCGAATATTATAAAA
ACAAGTTTCAAATAATCTTCTGTTTGCTCAAGTTTCTCTAACTCCTCTTT
TGGCGTGTTTTCCAATACGAAAAGATGAACAGTCTTCAGGATATACGAAG
ATAATTTCCGTTCACTTTTATCATCAATAAGACCATTGCTTTCTAAAGTA
AAAATCAGTTTAGCTAAGAGGTAGCTCTTCTTTTGAAAGGGACTTTGCTT
AAGCGCTAAGATGGTTTCAGCTATAGAGAAAGACAACCGCCATGTATTTT
TTTCATCTCCAATCGCCTTTCGCACCAATAGACATCCAACCTCGCGAATT
TCACATACAGTTTCTGGATCAGGGAAATGACGGTCTCTTATAAACCACTC
TTCTGTGATTATGGGCCAGAAATCCATGTGGAAACACAATACC Run BLAST on NCBI protein sequence of TCONS_00051975-protein >TCONS_00051975-protein ID=TCONS_00051975-protein|Name=TCONS_00051975-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
VLCFHMDFWPIITEEWFIRDRHFPDPETVCEIREVGCLLVRKAIGDEKNT
WRLSFSIAETILALKQSPFQKKSYLLAKLIFTLESNGLIDDKSERKLSSY
ILKTVHLFVLENTPKEELEKLEQTEDYLKLVFIIFERLLDALKVGYLPCY
FVLEMNLLHGFGQVFLDNIAHRFDNLFKCDMFIEKMVDNFKKNRMSDFIP
EDVLKEISSSS Run BLAST on NCBI transcript from alignment at scaffold_207:39045..40787 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051975 ID=TCONS_00051975|Name=TCONS_00051975|organism=Clytia hemisphaerica|type=transcript|length=1743bp|location=Sequence derived from alignment at scaffold_207:39045..40787 (Clytia hemisphaerica)
GGTATTGTGTTTCCACATGGATTTCTGGCCCATAATCACAGAAGAGTGGT
TTATAAGAGACCGTCATTTCCCTGATCCAGAAACTGTATGTGAAATTCGC
GAGGTTGGATGTCTATTGGTGCGAAAGGCGATTGGAGATGAAAAAAATAC
ATGGCGGTTGTCTTTCTCTATAGCTGAAACCATCTTAGCGCTTAAGCAAA
GTCCCTTTCAAAAGAAGAGCTACCTCTTAGCTAAACTGATTTTTACTTTA
GAAAGCAATGGTCTTATTGATGATAAAAGTGAACGGAAATTATCTTCGTA
TATCCTGAAGACTGTTCATCTTTTCGTATTGGAAAACACGCCAAAAGAGG
AGTTAGAGAAACTTGAGCAAACAGAAGATTATTTGAAACTTGTTTTTATA
ATATTCGAGAGATTATTAGATGCTTTAAAAGTTGGTTATCTTCCTTGTTA
TTTCGTGCTTGAAATGAATTTATTGCATGGCTTTGGTCAAGTGTTTTTAG
ATAATATCGCGCATCGTTTTGACAATCTATTCAAATGTGACATGTTCATT
GAAAAAATGGTCGataacttcaaaaaaaatcgaatgtcaGATTTTATTCC
GGAAGACGTTTTGAAAGAAATATCAAGCTCGTCATGAAGACTCCAATGTG
GCCAAGCAAGTGATACAGAAAGGAGCTACATATTGATTTAATGGACAATT
TTTCACGTATGAAGTATGGTAGTAATCTTATATCAAGCCGAAACCAAGTG
ATTTTCCTTTTGttccatgaaacaaaaaaggaAACCATTGGatacgcact
ttttttcttgtgttggtgggatggagcgtGTTgcataaaagcatgaaatt
ttacACAGATGATACCTAAAGGGTCGAAAATttaattagaaaataaaaaa
cttttgacgCAGTATTCTGGTTTGATTTGAACCCTTCCAGGGGTTACACG
AACGTGCAAAAGACatcattttcatttattataagaaaagcaattaagaa
aaattattatacACGTATCTcgttatagtagggggaaatttttctttttt
ttaggtcgctcgatttttttagtcaaagcacttgttatacgtTTTATATA
TTCAAGAAATCAATGAACATTTGAAATCaatataccttaagtggataaat
tttggcgtgtaTTTAATTTGGTGAATGGTCAAAATGCTacttttggcggg
gatttaatttggtgaatgctcaattttgtaaaatttggcgtggatttaat
ttggcgaaagacaaaaaaaatgttttctattAAGGTGTTTTGTTGAAGCT
cagaatagaaaaaataatacgtGTAACATAAGATCGGTTATAAAGGTAAA
AGTAGTTTGTTAAAATGTATACGGTTGGCTTAAAGAGaggcaaaaataat
tttctgtataaaaaacatgattttctctcaattttggcgaggatttaatt
tggcgaaagggaaatttcgaaaaatttggcggggatttaatttgacaaat
tgccgaatttggaaattttggctagaatttaatttggcggattttggcca
aattcgccaaattgccaaatttaatctcagtcaaaatttatccacttaag
atAGATCAAGTTTCGTACATCCAGTTTTGAACATTTACATTTACATTGAA
CATTTGGAGTTATTTTTTGTACATATCACTTCACATTTGGCAGGCTATTT
TCTatactttatttttcatatcAAGGCTTTGTCAActcatttc Coding sequence (CDS) from alignment at scaffold_207:39045..40787 >TCONS_00051975 ID=TCONS_00051975|Name=TCONS_00051975|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at scaffold_207:39045..40787 (Clytia hemisphaerica)
GTATTGTGTTTCCACATGGATTTCTGGCCCATAATCACAGAAGAGTGGTT
TATAAGAGACCGTCATTTCCCTGATCCAGAAACTGTATGTGAAATTCGCG
AGGTTGGATGTCTATTGGTGCGAAAGGCGATTGGAGATGAAAAAAATACA
TGGCGGTTGTCTTTCTCTATAGCTGAAACCATCTTAGCGCTTAAGCAAAG
TCCCTTTCAAAAGAAGAGCTACCTCTTAGCTAAACTGATTTTTACTTTAG
AAAGCAATGGTCTTATTGATGATAAAAGTGAACGGAAATTATCTTCGTAT
ATCCTGAAGACTGTTCATCTTTTCGTATTGGAAAACACGCCAAAAGAGGA
GTTAGAGAAACTTGAGCAAACAGAAGATTATTTGAAACTTGTTTTTATAA
TATTCGAGAGATTATTAGATGCTTTAAAAGTTGGTTATCTTCCTTGTTAT
TTCGTGCTTGAAATGAATTTATTGCATGGCTTTGGTCAAGTGTTTTTAGA
TAATATCGCGCATCGTTTTGACAATCTATTCAAATGTGACATGTTCATTG
AAAAAATGGTCGataacttcaaaaaaaatcgaatgtcaGATTTTATTCCG
GAAGACGTTTTGAAAGAAATATCAAGCTCGTCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051975-exon-scaffold_207-1491911889:39045..40787 | TCONS_00051975-exon-scaffold_207-1491911889:39045..40787 | Clytia hemisphaerica | exon |
| TCONS_00051975-exon-scaffold_207-1510915933:39045..40787 | TCONS_00051975-exon-scaffold_207-1510915933:39045..40787 | Clytia hemisphaerica | exon |
| TCONS_00051975-exon-scaffold_207-1575043694:39045..40787 | TCONS_00051975-exon-scaffold_207-1575043694:39045..40787 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_207 | supercontig | scaffold_207:39045..40787 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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