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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051974 ID=TCONS_00051974|Name=TCONS_00051974|organism=Clytia hemisphaerica|type=transcript|length=1576bp
aaaagttcttccatCTCAGAAGGATTCTTACGCGGTCAAGTATATATAAG
AGGTGTTttcgtctcaaaattctgcataattcatcaaaatttcaagaata
tttaCTAATTTGTGTGGAAAATCCTTGCTTTGGCCGCTGAAAATAGCGAC
ATGGAAAACCTAACATTTTTCAGAATGAATTTTACAATGATCACTCGAAG
TCAACACAATTTGGAGTATTTTAAACTACGATATAGTTGTTATTTAAAAG
TATTAAATTTAACATCTATGGACATTCTTGACAAAGTACTCGCAGCTGAA
AATCGAACATTCGAAATTGTTGCAACTGTGGTTTGTTTTATACTAGCTGC
GTTTATCATATCAGCAAATTCGGTTTTTATTTTCACACTTTTAGTTACTG
CCAAACGAAAATTGACATTTGTGCAGCGTTTGTTCTTGTATGTTTCATGT
ATAGATTTAATAGCTGGTTTTATTGCCATGCCTATGATGGGCGTAAGTCA
ATATCATGGTTTAACATGTTTACAACAAGCTTCGATGATGGGGGCGGCAG
TTTTTGCTGTAGTGGCGGATTCATGTGGCGTTTTAACTATCTCTTGTTTA
CGTTATCATTCGATATTGAAACCAATGCGTAAAATCAGCTCTAAACGAAT
AATATTTTTCCTGGTActtcaaattttatttgctttagcGTGTAGTATGC
TTTTCTTGTTTTGTTATGTAAAACTTGGTACTATTACCATGTTTCAAGTA
CTGGGACATTTGGCTGGCGCTGTTGTATCCATACTCAACCTTTCAATACT
TATCACCGTATTTTTAACACTGATCGGAATCGGGAAACTCAAAAAGACGG
AACTAAGTCTAGTTGATGAAACTAGACTGAGAAACCAACACAAATCAACT
AAAACATTACTTATTATAGCCTCAGTAATGACTTTATCATTTATAATGCA
AGTACCATCTTTAATAATATTAAGCCAGAGTTTGGCACAATCTTCGCTTT
TATCAGGAGAGACTTTCATATGGACGAAACGAAATGCTGATTTTTCAACT
TTGGTTTCTTGTTTAAATACTGGTTTTAATTCAGTGATTTTGATTTGTCG
TAGCAAGAAAATGAGACGTTATGTTAAGAAACGGATTTCGTTAATTTTTA
CGTCGTCAAATTCGGCAACGTCGGACTTAATCCTTAATGGAAGACCAAGT
TCTGGTGATTCTGCTGGACACATGTGAAGAAAATGAGACGTTGTTTTAAG
AAGcagattttattaatttttacgtCGTCGTCAAATTCGACAACGTCGGA
TTTAATCCTCAATGGAAGACCAAGTTCTGGTGATTCTGCTGGACACATGT
AGGGATGTAAAGAAGCACTTATACCATAAATTCTTAAATAAAAGTCCCCT
TTATAGCACCCGCTCTAATAACCGCCCCCTTTAAATGCAAAAAGAAAAGG
CTAAATAGACGATTTATGATATTTAggatattttgatatttaggatattt
tgatatttaggatattttgatatttaggatattttgatatttaggATTTA
CTgtattcaattttgatttatttgat Run BLAST on NCBI protein sequence of TCONS_00051974-protein >TCONS_00051974-protein ID=TCONS_00051974-protein|Name=TCONS_00051974-protein|organism=Clytia hemisphaerica|type=polypeptide|length=358bp
MENLTFFRMNFTMITRSQHNLEYFKLRYSCYLKVLNLTSMDILDKVLAAE
NRTFEIVATVVCFILAAFIISANSVFIFTLLVTAKRKLTFVQRLFLYVSC
IDLIAGFIAMPMMGVSQYHGLTCLQQASMMGAAVFAVVADSCGVLTISCL
RYHSILKPMRKISSKRIIFFLVLQILFALACSMLFLFCYVKLGTITMFQV
LGHLAGAVVSILNLSILITVFLTLIGIGKLKKTELSLVDETRLRNQHKST
KTLLIIASVMTLSFIMQVPSLIILSQSLAQSSLLSGETFIWTKRNADFST
LVSCLNTGFNSVILICRSKKMRRYVKKRISLIFTSSNSATSDLILNGRPS
SGDSAGHM Run BLAST on NCBI transcript from alignment at scaffold_207:24700..26275 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051974 ID=TCONS_00051974|Name=TCONS_00051974|organism=Clytia hemisphaerica|type=transcript|length=1576bp|location=Sequence derived from alignment at scaffold_207:24700..26275 (Clytia hemisphaerica)
atcaaataaatcaaaattgaatacAGTAAATcctaaatatcaaaatatcc
taaatatcaaaatatcctaaatatcaaaatatcctaaatatcaaaatatc
cTAAATATCATAAATCGTCTATTTAGCCTTTTCTTTTTGCATTTAAAGGG
GGCGGTTATTAGAGCGGGTGCTATAAAGGGGACTTTTATTTAAGAATTTA
TGGTATAAGTGCTTCTTTACATCCCTACATGTGTCCAGCAGAATCACCAG
AACTTGGTCTTCCATTGAGGATTAAATCCGACGTTGTCGAATTTGACGAC
GacgtaaaaattaataaaatctgCTTCTTAAAACAACGTCTCATTTTCTT
CACATGTGTCCAGCAGAATCACCAGAACTTGGTCTTCCATTAAGGATTAA
GTCCGACGTTGCCGAATTTGACGACGTAAAAATTAACGAAATCCGTTTCT
TAACATAACGTCTCATTTTCTTGCTACGACAAATCAAAATCACTGAATTA
AAACCAGTATTTAAACAAGAAACCAAAGTTGAAAAATCAGCATTTCGTTT
CGTCCATATGAAAGTCTCTCCTGATAAAAGCGAAGATTGTGCCAAACTCT
GGCTTAATATTATTAAAGATGGTACTTGCATTATAAATGATAAAGTCATT
ACTGAGGCTATAATAAGTAATGTTTTAGTTGATTTGTGTTGGTTTCTCAG
TCTAGTTTCATCAACTAGACTTAGTTCCGTCTTTTTGAGTTTCCCGATTC
CGATCAGTGTTAAAAATACGGTGATAAGTATTGAAAGGTTGAGTATGGAT
ACAACAGCGCCAGCCAAATGTCCCAGTACTTGAAACATGGTAATAGTACC
AAGTTTTACATAACAAAACAAGAAAAGCATACTACACgctaaagcaaata
aaatttgaagTACCAGGAAAAATATTATTCGTTTAGAGCTGATTTTACGC
ATTGGTTTCAATATCGAATGATAACGTAAACAAGAGATAGTTAAAACGCC
ACATGAATCCGCCACTACAGCAAAAACTGCCGCCCCCATCATCGAAGCTT
GTTGTAAACATGTTAAACCATGATATTGACTTACGCCCATCATAGGCATG
GCAATAAAACCAGCTATTAAATCTATACATGAAACATACAAGAACAAACG
CTGCACAAATGTCAATTTTCGTTTGGCAGTAACTAAAAGTGTGAAAATAA
AAACCGAATTTGCTGATATGATAAACGCAGCTAGTATAAAACAAACCACA
GTTGCAACAATTTCGAATGTTCGATTTTCAGCTGCGAGTACTTTGTCAAG
AATGTCCATAGATGTTAAATTTAATACTTTTAAATAACAACTATATCGTA
GTTTAAAATACTCCAAATTGTGTTGACTTCGAGTGATCATTGTAAAATTC
ATTCTGAAAAATGTTAGGTTTTCCATGTCGCTATTTTCAGCGGCCAAAGC
AAGGATTTTCCACACAAATTAGtaaatattcttgaaattttgatgaatta
tgcagaattttgagacgaaAACACCTCTTATATATACTTGACCGCGTAAG
AATCCTTCTGAGatggaagaactttt Coding sequence (CDS) from alignment at scaffold_207:24700..26275 >TCONS_00051974 ID=TCONS_00051974|Name=TCONS_00051974|organism=Clytia hemisphaerica|type=CDS|length=1077bp|location=Sequence derived from alignment at scaffold_207:24700..26275 (Clytia hemisphaerica)
TCACATGTGTCCAGCAGAATCACCAGAACTTGGTCTTCCATTAAGGATTA
AGTCCGACGTTGCCGAATTTGACGACGTAAAAATTAACGAAATCCGTTTC
TTAACATAACGTCTCATTTTCTTGCTACGACAAATCAAAATCACTGAATT
AAAACCAGTATTTAAACAAGAAACCAAAGTTGAAAAATCAGCATTTCGTT
TCGTCCATATGAAAGTCTCTCCTGATAAAAGCGAAGATTGTGCCAAACTC
TGGCTTAATATTATTAAAGATGGTACTTGCATTATAAATGATAAAGTCAT
TACTGAGGCTATAATAAGTAATGTTTTAGTTGATTTGTGTTGGTTTCTCA
GTCTAGTTTCATCAACTAGACTTAGTTCCGTCTTTTTGAGTTTCCCGATT
CCGATCAGTGTTAAAAATACGGTGATAAGTATTGAAAGGTTGAGTATGGA
TACAACAGCGCCAGCCAAATGTCCCAGTACTTGAAACATGGTAATAGTAC
CAAGTTTTACATAACAAAACAAGAAAAGCATACTACACgctaaagcaaat
aaaatttgaagTACCAGGAAAAATATTATTCGTTTAGAGCTGATTTTACG
CATTGGTTTCAATATCGAATGATAACGTAAACAAGAGATAGTTAAAACGC
CACATGAATCCGCCACTACAGCAAAAACTGCCGCCCCCATCATCGAAGCT
TGTTGTAAACATGTTAAACCATGATATTGACTTACGCCCATCATAGGCAT
GGCAATAAAACCAGCTATTAAATCTATACATGAAACATACAAGAACAAAC
GCTGCACAAATGTCAATTTTCGTTTGGCAGTAACTAAAAGTGTGAAAATA
AAAACCGAATTTGCTGATATGATAAACGCAGCTAGTATAAAACAAACCAC
AGTTGCAACAATTTCGAATGTTCGATTTTCAGCTGCGAGTACTTTGTCAA
GAATGTCCATAGATGTTAAATTTAATACTTTTAAATAACAACTATATCGT
AGTTTAAAATACTCCAAATTGTGTTGACTTCGAGTGATCATTGTAAAATT
CATTCTGAAAAATGTTAGGTTTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051974-exon-scaffold_207-1491911889:24700..26275 | TCONS_00051974-exon-scaffold_207-1491911889:24700..26275 | Clytia hemisphaerica | exon |
| TCONS_00051974-exon-scaffold_207-1510915933:24700..26275 | TCONS_00051974-exon-scaffold_207-1510915933:24700..26275 | Clytia hemisphaerica | exon |
| TCONS_00051974-exon-scaffold_207-1575043694:24700..26275 | TCONS_00051974-exon-scaffold_207-1575043694:24700..26275 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_207 | supercontig | scaffold_207:24700..26275 . |
Blast
The following BLAST results are available for this feature:
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