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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051951 ID=TCONS_00051951|Name=TCONS_00051951|organism=Clytia hemisphaerica|type=transcript|length=1276bp
cgacggggacgtgccgctagAGTTCGAAAagttgaccctgtcagatagGT
ATTTTTGTAAAATGGTGACCTGTCAGAAcacaattttccaatttccacCC
TAACAAGTGGCAAAATTGACTAAATTAGGGAAGCATCATATAAAAAATCC
AGCTCATctcaattctttttgtaaaattctATGAAACATGTACAATATCA
CTTTTATCTTCTTCTTAGTACGCCCTGTTTCTCTTGTCTCTGGTGAATCA
AAGTTCTTTTTGATCGATCAGCAGAAATCAATGGGAAAGGGATTTCAAAT
TCCTCTTCAGCAAGGTAATTCAAGTTCTCCAAATTTGAAGTCGTATCCAT
TGTATATATTTTATTGATCTGTGTTTTAATCAATGGTTTTCTTGGTACTT
GGCTTATGGGCGGCATTTTATATGACACGTCATGGGGCGTTTTATTGTGT
TTCGATGTCACTACGCCCTCAATGTTTCGCAAACAACCAAAAACAGATTC
GTTGAGTTTTTTTGGTGAAGGCAGCTGTGGCAAACCATCATTTTCAGTTC
TCGAAATCGTTTGACCAATCAACGTAAAACTAGAGTCCAGTCCTTTAATA
TTCCGTTtcttagattttgattttgccCGACTTCTCGTGTTGTTGTCTTT
GGGTATGTTTGTAAGTAAATCTTTGTGTCGATTTGGTGAAAATACAGCCA
TGGATGGAAGTTTAGGATGTTTTGGGTTTGCTTCCTCCATAACGATTTCT
TCCAGTAATCTGACGCCGGAAGTGGTTGCATTGGAGGAAGAATCTTCATC
AGTATTTTTCGGCCTTTTTAATATAGACACAACATTTTGTTCTGATTGCT
CCGTTTTCCGTTTCTTACGTTTTTCCATTAGTTCCTCTTCCGTGTATTTT
CCATATAAGAGATATTTGGTTGGAGACCATGGATAAATATATGCAGtatc
attttcttttgaaaaagtcacTTGCTTTGACTTACTGGCGAGGTTTCCAG
TGATTGGGGTTAAAGTCCAGTCTTTCTTCATTTTGAGGTGTAACTTTTGA
AAGTTGGATGTTTGTTTACACCATAGCGGAATTTTAGTAaattctaaatt
aaaaaaagaaatcttctttATTCGAAatcttatatttcttttttgatttc
caaagcaGGGATCAATCGTAGTGACCTTAATACAACAAAAATGATGCATA
TCCCAGTTTTGAATACCTGACATATCGAGTGACATATATCCACAACTATA
AACCATCCACACCTCAAAGAAAGCTA Run BLAST on NCBI protein sequence of TCONS_00051951-protein >TCONS_00051951-protein ID=TCONS_00051951-protein|Name=TCONS_00051951-protein|organism=Clytia hemisphaerica|type=polypeptide|length=356bp
AFFEVWMVYSCGYMSLDMSGIQNWDMHHFCCIKVTTIDPCFGNQKRNIRF
RIKKISFFNLEFTKIPLWCKQTSNFQKLHLKMKKDWTLTPITGNLASKSK
QVTFSKENDTAYIYPWSPTKYLLYGKYTEEELMEKRKKRKTEQSEQNVVS
ILKRPKNTDEDSSSNATTSGVRLLEEIVMEEANPKHPKLPSMAVFSPNRH
KDLLTNIPKDNNTRSRAKSKSKKRNIKGLDSSFTLIGQTISRTENDGLPQ
LPSPKKLNESVFGCLRNIEGVVTSKHNKTPHDVSYKMPPISQVPRKPLIK
TQINKIYTMDTTSNLENLNYLAEEEFEIPFPLISADRSKRTLIHQRQEKQ
GVLRRR Run BLAST on NCBI transcript from alignment at scaffold_206:169550..170825 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051951 ID=TCONS_00051951|Name=TCONS_00051951|organism=Clytia hemisphaerica|type=transcript|length=1276bp|location=Sequence derived from alignment at scaffold_206:169550..170825 (Clytia hemisphaerica)
TAGCTTTCTTTGAGGTGTGGATGGTTTATAGTTGTGGATATATGTCACTC
GATATGTCAGGTATTCAAAACTGGGATATGCATCATTTTTGTTGTATTAA
GGTCACTACGATTGATCCCtgctttggaaatcaaaaaagaaatataagat
TTCGAATaaagaagatttctttttttaatttagaattTACTAAAATTCCG
CTATGGTGTAAACAAACATCCAACTTTCAAAAGTTACACCTCAAAATGAA
GAAAGACTGGACTTTAACCCCAATCACTGGAAACCTCGCCAGTAAGTCAA
AGCAAgtgactttttcaaaagaaaatgataCTGCATATATTTATCCATGG
TCTCCAACCAAATATCTCTTATATGGAAAATACACGGAAGAGGAACTAAT
GGAAAAACGTAAGAAACGGAAAACGGAGCAATCAGAACAAAATGTTGTGT
CTATATTAAAAAGGCCGAAAAATACTGATGAAGATTCTTCCTCCAATGCA
ACCACTTCCGGCGTCAGATTACTGGAAGAAATCGTTATGGAGGAAGCAAA
CCCAAAACATCCTAAACTTCCATCCATGGCTGTATTTTCACCAAATCGAC
ACAAAGATTTACTTACAAACATACCCAAAGACAACAACACGAGAAGTCGg
gcaaaatcaaaatctaagaAACGGAATATTAAAGGACTGGACTCTAGTTT
TACGTTGATTGGTCAAACGATTTCGAGAACTGAAAATGATGGTTTGCCAC
AGCTGCCTTCACCAAAAAAACTCAACGAATCTGTTTTTGGTTGTTTGCGA
AACATTGAGGGCGTAGTGACATCGAAACACAATAAAACGCCCCATGACGT
GTCATATAAAATGCCGCCCATAAGCCAAGTACCAAGAAAACCATTGATTA
AAACACAGATCAATAAAATATATACAATGGATACGACTTCAAATTTGGAG
AACTTGAATTACCTTGCTGAAGAGGAATTTGAAATCCCTTTCCCATTGAT
TTCTGCTGATCGATCAAAAAGAACTTTGATTCACCAGAGACAAGAGAAAC
AGGGCGTACTAAGAAGAAGATAAAAGTGATATTGTACATGTTTCATagaa
ttttacaaaaagaattgagATGAGCTGGATTTTTTATATGATGCTTCCCT
AATTTAGTCAATTTTGCCACTTGTTAGGgtggaaattggaaaattgtgTT
CTGACAGGTCACCATTTTACAAAAATACctatctgacagggtcaactTTT
CGAACTctagcggcacgtccccgtcg Coding sequence (CDS) from alignment at scaffold_206:169550..170825 >TCONS_00051951 ID=TCONS_00051951|Name=TCONS_00051951|organism=Clytia hemisphaerica|type=CDS|length=1071bp|location=Sequence derived from alignment at scaffold_206:169550..170825 (Clytia hemisphaerica)
GCTTTCTTTGAGGTGTGGATGGTTTATAGTTGTGGATATATGTCACTCGA
TATGTCAGGTATTCAAAACTGGGATATGCATCATTTTTGTTGTATTAAGG
TCACTACGATTGATCCCtgctttggaaatcaaaaaagaaatataagatTT
CGAATaaagaagatttctttttttaatttagaattTACTAAAATTCCGCT
ATGGTGTAAACAAACATCCAACTTTCAAAAGTTACACCTCAAAATGAAGA
AAGACTGGACTTTAACCCCAATCACTGGAAACCTCGCCAGTAAGTCAAAG
CAAgtgactttttcaaaagaaaatgataCTGCATATATTTATCCATGGTC
TCCAACCAAATATCTCTTATATGGAAAATACACGGAAGAGGAACTAATGG
AAAAACGTAAGAAACGGAAAACGGAGCAATCAGAACAAAATGTTGTGTCT
ATATTAAAAAGGCCGAAAAATACTGATGAAGATTCTTCCTCCAATGCAAC
CACTTCCGGCGTCAGATTACTGGAAGAAATCGTTATGGAGGAAGCAAACC
CAAAACATCCTAAACTTCCATCCATGGCTGTATTTTCACCAAATCGACAC
AAAGATTTACTTACAAACATACCCAAAGACAACAACACGAGAAGTCGggc
aaaatcaaaatctaagaAACGGAATATTAAAGGACTGGACTCTAGTTTTA
CGTTGATTGGTCAAACGATTTCGAGAACTGAAAATGATGGTTTGCCACAG
CTGCCTTCACCAAAAAAACTCAACGAATCTGTTTTTGGTTGTTTGCGAAA
CATTGAGGGCGTAGTGACATCGAAACACAATAAAACGCCCCATGACGTGT
CATATAAAATGCCGCCCATAAGCCAAGTACCAAGAAAACCATTGATTAAA
ACACAGATCAATAAAATATATACAATGGATACGACTTCAAATTTGGAGAA
CTTGAATTACCTTGCTGAAGAGGAATTTGAAATCCCTTTCCCATTGATTT
CTGCTGATCGATCAAAAAGAACTTTGATTCACCAGAGACAAGAGAAACAG
GGCGTACTAAGAAGAAGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051951-exon-scaffold_206-1491911889:169550..170825 | TCONS_00051951-exon-scaffold_206-1491911889:169550..170825 | Clytia hemisphaerica | exon |
| TCONS_00051951-exon-scaffold_206-1510915933:169550..170825 | TCONS_00051951-exon-scaffold_206-1510915933:169550..170825 | Clytia hemisphaerica | exon |
| TCONS_00051951-exon-scaffold_206-1575043694:169550..170825 | TCONS_00051951-exon-scaffold_206-1575043694:169550..170825 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_206 | supercontig | scaffold_206:169550..170825 . |
Blast
The following BLAST results are available for this feature:
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