TCONS_00051948 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051948
Unique NameTCONS_00051948
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length465

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051948 ID=TCONS_00051948|Name=TCONS_00051948|organism=Clytia hemisphaerica|type=transcript|length=465bp
ggaaaaaataaccTGAAATTTTAAACCACTTTAAAAGAACCGAATGACTT
TACCCTCAGTGTGGTGGAAAGATTGCACTGCAACCATTCTCTCTATAAAC
TTAGAGCTGGAATATATATTGTCTATCCCAATCGGGACACTACGattaga
taaaaattttcatccacactgaaggaaaaagctccaccggggcggcACTG
AAACAGTGGTGTATGTGCGCGAGAGAATGAAAACAACGCccagaaagaaa
ataaagaccAACGAAGTTACAGTCTATATTCTATTAATTTGATTGTAATG
ATCAATggcctcatttttatttttggccactttttttaatgttgtatgta
tttcgtaacgtatattattttataaattgttaattttaaaataaaaaagg
tgcgtccttattttcttcttcacaaCTCTCGAGCAACACGCTCTCCCTGA
ACAGCCCATAATGGT
Run BLAST on NCBI

transcript from alignment at scaffold_206:144774..145238

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051948 ID=TCONS_00051948|Name=TCONS_00051948|organism=Clytia hemisphaerica|type=transcript|length=465bp|location=Sequence derived from alignment at scaffold_206:144774..145238 (Clytia hemisphaerica)
ACCATTATGGGCTGTTCAGGGAGAGCGTGTTGCTCGAGAGttgtgaagaa
gaaaataaggacgcaccttttttattttaaaattaacaatttataaaata
atatacgttacgaaatacatacaacattaaaaaaagtggccaaaaataaa
aatgaggccATTGATCATTACAATCAAATTAATAGAATATAGACTGTAAC
TTCGTTggtctttattttctttctggGCGTTGTTTTCATTCTCTCGCGCA
CATACACCACTGTTTCAGTgccgccccggtggagctttttccttcagtgt
ggatgaaaatttttatctaatCGTAGTGTCCCGATTGGGATAGACAATAT
ATATTCCAGCTCTAAGTTTATAGAGAGAATGGTTGCAGTGCAATCTTTCC
ACCACACTGAGGGTAAAGTCATTCGGTTCTTTTAAAGTGGTTTAAAATTT
CAggttattttttcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032879XLOC_032879Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051948-exon-scaffold_206-1491911889:144774..145238TCONS_00051948-exon-scaffold_206-1491911889:144774..145238Clytia hemisphaericaexon
TCONS_00051948-exon-scaffold_206-1510915933:144774..145238TCONS_00051948-exon-scaffold_206-1510915933:144774..145238Clytia hemisphaericaexon
TCONS_00051948-exon-scaffold_206-1575043694:144774..145238TCONS_00051948-exon-scaffold_206-1575043694:144774..145238Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_206supercontigscaffold_206:144774..145238 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.21297	2.38611	0.82992	1.34752	2.84303	1.17789	1.00086	2.4552	1.89498	1.15447	1.89865	1.21391	1.81943	0.340973	1.033	0.848084	0	2.33711	1.33366	1.68514	1.79777	1.08751	0	1.17387	2.91289	1.68829	0.745694	1.00073	1.84061	1.86031
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051948 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top