TCONS_00051942 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051942
Unique NameTCONS_00051942
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length307

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051942 ID=TCONS_00051942|Name=TCONS_00051942|organism=Clytia hemisphaerica|type=transcript|length=307bp
NNAATTAGTTATATTCAATAGGGCCGTTAGTAAAAAATAgtttggttccc
gtcaccccaactttgaaaaagtgggtcggtcggggttaaaaaaatttatg
ctcACTGATCATGCGACTCAGTATCTTCATCCGCCAGGTTGTTTTAAAAA
CCCTTCTCTAAAAATTAAGCCCCAGGTTCTTATAGCCAGAGTGGTTCCAT
TtggtccaaaaaatgaaaatcgggaaaaaatcCATACAAAGCTGGATTTC
GGATTAAATTTGGATGGAAATCCGCTCAAACGCCGCTCGCTACATCGCTC
AGAGTTT
Run BLAST on NCBI

transcript from alignment at scaffold_206:45027..45333

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051942 ID=TCONS_00051942|Name=TCONS_00051942|organism=Clytia hemisphaerica|type=transcript|length=307bp|location=Sequence derived from alignment at scaffold_206:45027..45333 (Clytia hemisphaerica)
AAACTCTGAGCGATGTAGCGAGCGGCGTTTGAGCGGATTTCCATCCAAAT
TTAATCCGAAATCCAGCTTTGTATGgattttttcccgattttcatttttt
ggaccaAATGGAACCACTCTGGCTATAAGAACCTGGGGCTTAATTTTTAG
AGAAGGGTTTTTAAAACAACCTGGCGGATGAAGATACTGAGTCGCATGAT
CAGTgagcataaatttttttaaccccgaccgacccactttttcaaagttg
gggtgacgggaaccaaacTATTTTTTACTAACGGCCCTATTGAATATAAC
TAATTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032873XLOC_032873Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051942-exon-scaffold_206-1491911889:45027..45333TCONS_00051942-exon-scaffold_206-1491911889:45027..45333Clytia hemisphaericaexon
TCONS_00051942-exon-scaffold_206-1510915933:45027..45333TCONS_00051942-exon-scaffold_206-1510915933:45027..45333Clytia hemisphaericaexon
TCONS_00051942-exon-scaffold_206-1575043694:45027..45333TCONS_00051942-exon-scaffold_206-1575043694:45027..45333Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_206supercontigscaffold_206:45027..45333 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.413498	0	0.366545	0.493983	1.85153	1.49687	1.77991	0.843426	0	1.04772	0	0.340604	0.448233	0.745231	2.22565e-05	0.377136	0	0.948615	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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