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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051941 ID=TCONS_00051941|Name=TCONS_00051941|organism=Clytia hemisphaerica|type=transcript|length=2373bp
CTAGGGGTCGTACATATTCTTGCGCTGTTgattgttttcttgaaataagt
TATCGCCTGCTTCTTCCTGAAATTAAAGCAAAATTCTCATTTGACGAATT
AAGtgaattcttttatttgcttatTATAAGTGGTTCGATGGAAATTCCAA
TTGAAAATGATATCACCAACGTCAAAAGTAATGCGTTTAGACTGCTGGAT
GAAATTCGAGAACCAATTTGgtcaaaaattattgaaaattgtgGTACGTA
TGCCAGCAGAAATAGTGATGCACAGTTTACAGAGCTTTTTTCAGGTAACC
TTTTTATGGCATTATCAGAAGGagagaaaagattttttgaaacaagATTT
GACGTTCGAGGAACTTGCCCTGTTTGTAATAACGAGAGACAAAGTAAGAC
AGGAATCATTGTCACACTTCTTACAGATCTTTTATATCCAGAGATTACGA
TTGACCCAAACAACTGGCCAGATTGTGTAAATAGAGCTCTCGATCCAAGT
ACAGAAGTTCACTGCAATACTTGTTCTGTTAATATTCCTGCCCAGTATCA
ATCTGTTGACCTTCCATGTTTTTTGTTGATAGAATTCAGTTCTACAATTC
ATAATAGTTGTAGATTTTTAGATCAGATTATAGTGAAAGGGAATACTTAT
AAATTACAAGCCATTGTTAGAAATCTAGGTTTTCACTTTGCATGTGGTGT
ATTTATCGAGAACAAATGGATTTATATTGATGATTTGaatcctgaaaaaa
taatttatgaaaatgttaaTGCAatgttttcagaaaataaaggaggatgg
ttttttgctttttataaaaaaactgatgaagaaaacATAGACTTTGTGGT
GCATGATGCAACTGCTAATGTTGCAGCAAATCGTAATCCACAAGAAACTG
TAAAGGACAATACTCAAACAGACAAAATTATAAAAGAATACCCAAATCGA
AAAAGAAAACTTGTCAATTATGAAGGTCTTTGTAATAACGGTAGTAAAAA
GGGAAAATATGATGACTTATTTAAAGCAATTGACAAAAGGATACAAAATG
ACCCTTCGAAACTGAAAATTGGTCTTGAAAATAGAAAGCCAAAATACAAC
CCTCTAAAACGTAAAGAGCGACATCAAAAATCTTACGAGCCTTTGAAACG
TAAAGAGCAACAGCAAAAATCTTATGAGCCTTTGAAACGTAAAGAGCAAC
ATCAAAAATCTTACGTGCCTTTGAAACGTAAAGAGCAACATCGAAAATCT
TACAACCCTGAAATACAAAAGGCAAAATATGATTCAAAGcagcgaaaaga
aaaatatcttttcgaaaaacaaaataaaaaatcccaaGAAACAGAAACTG
ACATCAATATgagtaaaaacatgaaaaattttcaggaaTCTATGAAGTTT
TCAATGGCTCAATGTCAAACATGTTTCGAATCCTGGCCAATAAAAATTAC
ATCAAAAGTAAACGCAGTCAATGATTACATTTGTACACGTTGTAAAAGAG
ACAAAGGAactccaaaaaaatttattgccgATAATAATATGAAACCAAGT
CCTGTGCCAGAAGCATTGAAAGGTCTCACACAAGTTGAAGAAATGCTAAT
AGCCAGAGCTTTTCCTGTAATGCAAGTGTACACCCGGCCAAGAGGAGGTC
AGAGAGCTTACAAAGGTCACGTTTTGAATTTGCCTCACAATGTACAAAAA
ATTGCAGATGTCCTTCCAAGAGAACCCAGTGACATTCCtgtcatgatttt
taaaattaatgGGAAAAATAATACCTCAAAAGAACTTGTTGTTCTTACAG
GCATTGTTATGGTTAACCGGAAAAAATGACAAAGGTGAACCCAATAACTT
TTTATATAGTGAAATCAACATAAACATGGAAAGACTACAAAAACTCCCTG
AAAACGGATTTATTGATTTACCAGACTTGCATGTACAAATGAATGAGAAG
AGTGATATTGTAAAtgacaaagaaaatgaaagtgatgaGGAAGATGAAGA
TGTCAGTGAAAGCGAAGAATTGCCAGATTTAGGTCCAGTTAATGATGATA
ACGATGAATGTGTTTTTGATGAAAGCActgaaatgaaaagtttcttACCA
TCCAAACTAAAGAAAGCAAAGGAAGCTGATTTGaccaaaagtgaaatttt
gaataCAAAAACTGAAGTTGATATTGGAAGTTCTCCACTTAGTGAATTCA
ATACACCCTACTTAGCAAGTCTTGCTTTTCCAACATTGTTTCCAGACACA
AAAGGTGACCCAACTAATCCTGCAATTATAAGGGAAATTGCAAAAAGTGA
AACTGAGAGTTTTGcggaaaaattaaaacatttaatTAAATTTGCCGAAG
TTGATGAGAAAGGAAAATGGTTT Run BLAST on NCBI protein sequence of TCONS_00051941-protein >TCONS_00051941-protein ID=TCONS_00051941-protein|Name=TCONS_00051941-protein|organism=Clytia hemisphaerica|type=polypeptide|length=608bp
RGRTYSCAVDCFLEISYRLLLPEIKAKFSFDELSEFFYLLIISGSMEIPI
ENDITNVKSNAFRLLDEIREPIWSKIIENCGTYASRNSDAQFTELFSGNL
FMALSEGEKRFFETRFDVRGTCPVCNNERQSKTGIIVTLLTDLLYPEITI
DPNNWPDCVNRALDPSTEVHCNTCSVNIPAQYQSVDLPCFLLIEFSSTIH
NSCRFLDQIIVKGNTYKLQAIVRNLGFHFACGVFIENKWIYIDDLNPEKI
IYENVNAMFSENKGGWFFAFYKKTDEENIDFVVHDATANVAANRNPQETV
KDNTQTDKIIKEYPNRKRKLVNYEGLCNNGSKKGKYDDLFKAIDKRIQND
PSKLKIGLENRKPKYNPLKRKERHQKSYEPLKRKEQQQKSYEPLKRKEQH
QKSYVPLKRKEQHRKSYNPEIQKAKYDSKQRKEKYLFEKQNKKSQETETD
INMSKNMKNFQESMKFSMAQCQTCFESWPIKITSKVNAVNDYICTRCKRD
KGTPKKFIADNNMKPSPVPEALKGLTQVEEMLIARAFPVMQVYTRPRGGQ
RAYKGHVLNLPHNVQKIADVLPREPSDIPVMIFKINGKNNTSKELVVLTG
IVMVNRKK Run BLAST on NCBI transcript from alignment at scaffold_206:39291..41663 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051941 ID=TCONS_00051941|Name=TCONS_00051941|organism=Clytia hemisphaerica|type=transcript|length=2373bp|location=Sequence derived from alignment at scaffold_206:39291..41663 (Clytia hemisphaerica)
AAACCATTTTCCTTTCTCATCAACTTCGGCAAATTTAattaaatgtttta
atttttccgCAAAACTCTCAGTTTCACTTTTTGCAATTTCCCTTATAATT
GCAGGATTAGTTGGGTCACCTTTTGTGTCTGGAAACAATGTTGGAAAAGC
AAGACTTGCTAAGTAGGGTGTATTGAATTCACTAAGTGGAGAACTTCCAA
TATCAACTTCAGTTTTTGtattcaaaatttcacttttggtCAAATCAGCT
TCCTTTGCTTTCTTTAGTTTGGATGGTaagaaacttttcatttcagTGCT
TTCATCAAAAACACATTCATCGTTATCATCATTAACTGGACCTAAATCTG
GCAATTCTTCGCTTTCACTGACATCTTCATCTTCCtcatcactttcattt
tctttgtcaTTTACAATATCACTCTTCTCATTCATTTGTACATGCAAGTC
TGGTAAATCAATAAATCCGTTTTCAGGGAGTTTTTGTAGTCTTTCCATGT
TTATGTTGATTTCACTATATAAAAAGTTATTGGGTTCACCTTTGTCATTT
TTTCCGGTTAACCATAACAATGCCTGTAAGAACAACAAGTTCTTTTGAGG
TATTATTTTTCCcattaattttaaaaatcatgacaGGAATGTCACTGGGT
TCTCTTGGAAGGACATCTGCAATTTTTTGTACATTGTGAGGCAAATTCAA
AACGTGACCTTTGTAAGCTCTCTGACCTCCTCTTGGCCGGGTGTACACTT
GCATTACAGGAAAAGCTCTGGCTATTAGCATTTCTTCAACTTGTGTGAGA
CCTTTCAATGCTTCTGGCACAGGACTTGGTTTCATATTATTATcggcaat
aaatttttttggagtTCCTTTGTCTCTTTTACAACGTGTACAAATGTAAT
CATTGACTGCGTTTACTTTTGATGTAATTTTTATTGGCCAGGATTCGAAA
CATGTTTGACATTGAGCCATTGAAAACTTCATAGAttcctgaaaattttt
catgtttttactcATATTGATGTCAGTTTCTGTTTCttgggattttttat
tttgtttttcgaaaagatatttttcttttcgctgCTTTGAATCATATTTT
GCCTTTTGTATTTCAGGGTTGTAAGATTTTCGATGTTGCTCTTTACGTTT
CAAAGGCACGTAAGATTTTTGATGTTGCTCTTTACGTTTCAAAGGCTCAT
AAGATTTTTGCTGTTGCTCTTTACGTTTCAAAGGCTCGTAAGATTTTTGA
TGTCGCTCTTTACGTTTTAGAGGGTTGTATTTTGGCTTTCTATTTTCAAG
ACCAATTTTCAGTTTCGAAGGGTCATTTTGTATCCTTTTGTCAATTGCTT
TAAATAAGTCATCATATTTTCCCTTTTTACTACCGTTATTACAAAGACCT
TCATAATTGACAAGTTTTCTTTTTCGATTTGGGTATTCTTTTATAATTTT
GTCTGTTTGAGTATTGTCCTTTACAGTTTCTTGTGGATTACGATTTGCTG
CAACATTAGCAGTTGCATCATGCACCACAAAGTCTATgttttcttcatca
gtttttttataaaaagcaaaaaaccatcctcctttattttctgaaaacat
TGCAttaacattttcataaattattttttcaggattCAAATCATCAATAT
AAATCCATTTGTTCTCGATAAATACACCACATGCAAAGTGAAAACCTAGA
TTTCTAACAATGGCTTGTAATTTATAAGTATTCCCTTTCACTATAATCTG
ATCTAAAAATCTACAACTATTATGAATTGTAGAACTGAATTCTATCAACA
AAAAACATGGAAGGTCAACAGATTGATACTGGGCAGGAATATTAACAGAA
CAAGTATTGCAGTGAACTTCTGTACTTGGATCGAGAGCTCTATTTACACA
ATCTGGCCAGTTGTTTGGGTCAATCGTAATCTCTGGATATAAAAGATCTG
TAAGAAGTGTGACAATGATTCCTGTCTTACTTTGTCTCTCGTTATTACAA
ACAGGGCAAGTTCCTCGAACGTCAAATcttgtttcaaaaaatcttttctc
tCCTTCTGATAATGCCATAAAAAGGTTACCTGAAAAAAGCTCTGTAAACT
GTGCATCACTATTTCTGCTGGCATACGTACcacaattttcaataattttt
gacCAAATTGGTTCTCGAATTTCATCCAGCAGTCTAAACGCATTACTTTT
GACGTTGGTGATATCATTTTCAATTGGAATTTCCATCGAACCACTTATAa
taagcaaataaaagaattcaCTTAATTCGTCAAATGAGAATTTTGCTTTA
ATTTCAGGAAGAAGCAGGCGATAacttatttcaagaaaacaatcAACAGC
GCAAGAATATGTACGACCCCTAG Coding sequence (CDS) from alignment at scaffold_206:39291..41663 >TCONS_00051941 ID=TCONS_00051941|Name=TCONS_00051941|organism=Clytia hemisphaerica|type=CDS|length=1827bp|location=Sequence derived from alignment at scaffold_206:39291..41663 (Clytia hemisphaerica)
TCATTTTTTCCGGTTAACCATAACAATGCCTGTAAGAACAACAAGTTCTT
TTGAGGTATTATTTTTCCcattaattttaaaaatcatgacaGGAATGTCA
CTGGGTTCTCTTGGAAGGACATCTGCAATTTTTTGTACATTGTGAGGCAA
ATTCAAAACGTGACCTTTGTAAGCTCTCTGACCTCCTCTTGGCCGGGTGT
ACACTTGCATTACAGGAAAAGCTCTGGCTATTAGCATTTCTTCAACTTGT
GTGAGACCTTTCAATGCTTCTGGCACAGGACTTGGTTTCATATTATTATc
ggcaataaatttttttggagtTCCTTTGTCTCTTTTACAACGTGTACAAA
TGTAATCATTGACTGCGTTTACTTTTGATGTAATTTTTATTGGCCAGGAT
TCGAAACATGTTTGACATTGAGCCATTGAAAACTTCATAGAttcctgaaa
atttttcatgtttttactcATATTGATGTCAGTTTCTGTTTCttgggatt
ttttattttgtttttcgaaaagatatttttcttttcgctgCTTTGAATCA
TATTTTGCCTTTTGTATTTCAGGGTTGTAAGATTTTCGATGTTGCTCTTT
ACGTTTCAAAGGCACGTAAGATTTTTGATGTTGCTCTTTACGTTTCAAAG
GCTCATAAGATTTTTGCTGTTGCTCTTTACGTTTCAAAGGCTCGTAAGAT
TTTTGATGTCGCTCTTTACGTTTTAGAGGGTTGTATTTTGGCTTTCTATT
TTCAAGACCAATTTTCAGTTTCGAAGGGTCATTTTGTATCCTTTTGTCAA
TTGCTTTAAATAAGTCATCATATTTTCCCTTTTTACTACCGTTATTACAA
AGACCTTCATAATTGACAAGTTTTCTTTTTCGATTTGGGTATTCTTTTAT
AATTTTGTCTGTTTGAGTATTGTCCTTTACAGTTTCTTGTGGATTACGAT
TTGCTGCAACATTAGCAGTTGCATCATGCACCACAAAGTCTATgttttct
tcatcagtttttttataaaaagcaaaaaaccatcctcctttattttctga
aaacatTGCAttaacattttcataaattattttttcaggattCAAATCAT
CAATATAAATCCATTTGTTCTCGATAAATACACCACATGCAAAGTGAAAA
CCTAGATTTCTAACAATGGCTTGTAATTTATAAGTATTCCCTTTCACTAT
AATCTGATCTAAAAATCTACAACTATTATGAATTGTAGAACTGAATTCTA
TCAACAAAAAACATGGAAGGTCAACAGATTGATACTGGGCAGGAATATTA
ACAGAACAAGTATTGCAGTGAACTTCTGTACTTGGATCGAGAGCTCTATT
TACACAATCTGGCCAGTTGTTTGGGTCAATCGTAATCTCTGGATATAAAA
GATCTGTAAGAAGTGTGACAATGATTCCTGTCTTACTTTGTCTCTCGTTA
TTACAAACAGGGCAAGTTCCTCGAACGTCAAATcttgtttcaaaaaatct
tttctctCCTTCTGATAATGCCATAAAAAGGTTACCTGAAAAAAGCTCTG
TAAACTGTGCATCACTATTTCTGCTGGCATACGTACcacaattttcaata
atttttgacCAAATTGGTTCTCGAATTTCATCCAGCAGTCTAAACGCATT
ACTTTTGACGTTGGTGATATCATTTTCAATTGGAATTTCCATCGAACCAC
TTATAataagcaaataaaagaattcaCTTAATTCGTCAAATGAGAATTTT
GCTTTAATTTCAGGAAGAAGCAGGCGATAacttatttcaagaaaacaatc
AACAGCGCAAGAATATGTACGACCCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051941-exon-scaffold_206-1491911889:39291..41663 | TCONS_00051941-exon-scaffold_206-1491911889:39291..41663 | Clytia hemisphaerica | exon |
| TCONS_00051941-exon-scaffold_206-1510915933:39291..41663 | TCONS_00051941-exon-scaffold_206-1510915933:39291..41663 | Clytia hemisphaerica | exon |
| TCONS_00051941-exon-scaffold_206-1575043694:39291..41663 | TCONS_00051941-exon-scaffold_206-1575043694:39291..41663 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_206 | supercontig | scaffold_206:39291..41663 . |
Blast
The following BLAST results are available for this feature:
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