TCONS_00051931 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051931
Unique NameTCONS_00051931
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1209

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051931 ID=TCONS_00051931|Name=TCONS_00051931|organism=Clytia hemisphaerica|type=transcript|length=1209bp
aaaaaaatgcgtGTAAAAGGGGAATCGTCTAAAAAGGTTTGACAGCTTGT
GGAACCATCACTACGCTATTGTCGAATGATAATTAAAAAGGGAGAAATAT
AGAGGGACAGATTTGAAGACCCGTCGTAAAGAAAGatgtttcaaagattt
ttaattacaaaaagaaacttccaagttgttttttttagaaagtAGTAGAT
TAGGGAAAAGGAAAAACCAACGAAACCAACGAAATGGAATAACGCAAAAA
TATGGAAATCTTACAGGGAAATCTAATCCTTATTGGCGTGATTGCCTTCC
ATTACTTTGATAAGATAAGGACTGAAGATCAAATACTTTTCACAGACACA
CGTAGAAATTACCGATTTATTGGTGAAATTATTGAAACATTTTCTGACTC
CAAAGTTGATCCTATTTCATGTTTAACACACTGCCTTGCTGCTAAGAAAA
CATGCAAATCTATTAATGTCAATGAGAAATTGGGAAAATGTGAATTATTG
GGACAATCGAAATTGATGGATGatcatttaaaaatgaaaagcgACGAAGG
GTGGATTTACTATGGACCAGGGGAAACACCAAGGaatTATGAGAAATGTC
AACGTGGTGAGGAAGGACCAAAATTTTGTTGTCCAAAAGAAAAGACTGGG
AAGAATTGTGGTGAAACAGTATGGGAGaaacaaaatatcaaagaaatatG
CTTCAAGAACAAGGGTAACAATCCAGGGAGATTTAGTCTTCAGCGTAAAG
GTCGAATCTTGGCTTTTAAACTGGAATATGTCACTGGTTTTGTGAGATTT
TGGAAAACTAACGAACATACTTATTGGGGATGGCAACTGCAAGAAAATGC
CGCACCTTCTGCACTGAGTGAAAACGCATTGAccataataattaaaaaaa
ggaAACGAGGTATAACTATTGCACCTTCGAATAAGCTAATTAATAATCTC
TATTATACGATACCAGGTTATCTCCATAATTCTAAAGAACTGATTCTTGC
CATCAGAGGAGGATCATATGATGGAGATAAAGGTGAAGAATTAAGAATTT
GGTACGTAGAAGACTTTTATGATATACATGAGTATGATAACTCAGGAGAA
ATATGTACCAATATTTATGTGAAGTACCAGAAGTAGAAAAACCTACCCGT
GGTAACAGAGAAAATCAGCCTCTTCCTGCGGTGAGAAAAATGACAGGAAA
CTATTGTTT
Run BLAST on NCBI

transcript from alignment at scaffold_206:284432..287515-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051931 ID=TCONS_00051931|Name=TCONS_00051931|organism=Clytia hemisphaerica|type=transcript|length=3084bp|location=Sequence derived from alignment at scaffold_206:284432..287515- (Clytia hemisphaerica)
AAAAAAATGCGTGTAAAAGGGGAATCGTCTAAAAAGGTTTGACAGCTTGT
GGAACCATCACTACGCTATTGTCGAATGATAATTAAAAAGGGAGAAATAT
AGAGGGACAGATTTGAAGACCCGTCGTAAAGAAAGATGTTTCAAAGATTT
TTAATTACAAAAAGAAACTTCCAAGTTGTTTTTTTTAGAAAGTAGTAGAT
TAGGGAAAAGGAAAAACCAACGAAACCAACGAAATGGAATAACGCAAAAA
TATGGAAATCTTACAGGGAAATCTAATCCTTATTGGCGTGATTGCCTTCC
ATTACTTTGATAAGATAAGGACTGAAGATCAAATACTTTTCACAGACACA
CGTAGAAATTACCGATTTATTGGTGAAATTATTGAAACATTTTCTGACTC
CAAAGTTGATCCTATTTCATGTTTAACACACTGCCTTGCTGCTAAGAAAA
CATGCAAATCTATTAATGTCAATGAGAAATTGGGAAAATGTGAATTATTG
GGACAATCGAAATTGATGGATGATCATTTAAAAATGAAAAGCGACGAAGG
GTGGATTTACTATGGACCAGGGGAAACACCAAGGGTAATTAATTTTGATG
TTTTTTATATAATTATCCGACAAACGTAAATAGCGACATTTGATTGGATG
ATTTTAAGTTTAAATCTTCTTCAAATATTCGAAAATGAAGATCAAAAGAA
GATAAAAATAAAGATTATTTCTACCGCATGTAATCAGGGTTTCCTGGTCA
GGGTACCTTTTTTAACCTCCACGACTCCCAGGTAGGGTCGCAAAAACACC
AAAATAGAAAAATCAGTCCCTCGTAGGGTGCCTATTTTTGGAAAATTTGG
GGAAAAAGTAGAAAATTTAGAATATTTTGGAATTTCAGTCTCATTCAGGG
TGTCCTTTTTCGCAAATTTCGAGTCCCACGCAGGGTCCATTTTTCGAACC
TCAGCGGAGCACCCCCGTCGGTCGACAAGGGTAGTACCCCCTCCCCCCGG
GACCAATCCTTTATCAACAAGTAAATCGTGGGAATTGATCATGTATTCAA
AATTTTTTCAGAATTATGAGAAATGTCAACGTGGTGAGGAAGGACCAAAA
TTTTGTTGTCCAAAAGAAAAGACTGGGAAGAATTGTGGTGAAACAGGTTT
GCACTTTATTCAACTTTTTGAATTTTATACTCCAGATCTAAAGTCTAGGT
GTTTGGTATTTTAGCAGTTGAAAGCTTTGTCTTTTGAGTTAAAACCTTTC
CGTGTTAATGTCTGGTGTACTCATACTTCCACTCTATTTGCCATTGTCGG
ATATACTAACTTTGAAATTTTCTACGAACTTCCCAAGGAATTTAAACTAA
AGTAAGTCTCTATTATCTAATTTCTGTACCCCTAATAGCTACAAAAAAAA
AATAAAAAAACTCTAAAAAAGGCTTACACTTGAGAAAAAAGTCACGGTAA
GGGTCCCAAAATTCACTAAAGTTCGGCTTATTCCTCGATTTGAGACCCCT
TAAGTTTCCGATTTTCATGGGCGGTACACCACCCGTCATTTCGAATACCT
AGTACCACCCCAGGGATCTTACTCCTTGGCAAATATAGAAAATGTAAAAA
GGGGTCCAAAAAAAATTCTAATTTTGATCTTAAAAGTTATTTAGGTAATC
AAATCGAAATCCTGACAACCTTAAATATAGATTATTTCAACTCACGCAAC
TAAAAATTCCATTTTTTTAGTATGGGAGAAACAAAATATCAAAGAAATAT
GCTTCAAGAACAAGGGTAACAATCCAGGGAGATTTAGTCTTCAGCGTAAA
GGTCGAATCTTGGCTTTTAAACTGGAATATGTCACTGGTTTTGTGANAAT
CGTGGGAATTGATCATGTATTCAAAATTTTTTCAGAATTATGAGAAATGT
CAACGTGGTGAGGAAGGACCAAAATTTTGTTGTCCAAAAGAAAAGACTGG
GAAGAATTGTGGTGAAACAGGTTTGCACTTTATTCAACTTTTTGAATTTT
ATACTCCAGATCTAAAGTCTAGGTGTTTGGTATTTTAGCAGTTGAAAGCT
TTGTCTTTTGAGTTAAAACCTTTCCGTGTTAATGTCTGGTGTACTCATAC
TTCCACTCTATTTGCCATTGTCGGATATACTAACTTTGAAATTTTCTACG
AACTTCCCAAGGAATTTAAACTAAAGTAAGTCTCTATTATCTAATTTCTG
TACCCCTAATAGCTACAAAAAAAAAATAAAAAAACTCTAAAAAAGGCTTA
CACTTGAGAAAAAAGTCACGGTAAGGGTCCCAAAATTCACTAAAGTTCGG
CTTATTCCTCGATTTGAGACCCCTTAAGTTTCCGATTTTCATGGGCGGTA
CACCACCCGTCATTTCGAATACCTAGTACCACCCCAGGGATCTTACTCCT
TGGCAAATATAGAAAATGTAAAAAGGGGTCCAAAAAAAATTCTAATTTTG
ATCTTAAAAGTTATTTAGGTAATCAAATCGAAATCCTGACAACCTTAAAT
ATAGATTATTTCAACTCACGCAACTAAAAATTCCATTTTTTTAGTATGGG
AGAAACAAAATATCAAAGAAATATGCTTCAAGAACAAGGGTAACAATCCA
GGGAGATTTAGTCTTCAGCGTAAAGGTCGAATCTTGGCTTTTAAACTGGA
ATATGTCACTGGTTTTGTGAGATTTTGGAAAACTAACGAACATACTTATT
GGGGATGGCAACTGCAAGAAAATGCCGCACCTTCTGCACTGAGTGAAAAC
GCATTGACCATAATAATTAAAAAAAGGAAACGAGGTATAACTATTGCACC
TTCGAATAAGCTAATTAATAATCTCTATTATACGATACCAGGTTATCTCC
ATAATTCTAAAGAACTGATTCTTGCCATCAGAGGAGGATCATATGATGGA
GATAAAGGTGAAGAATTAAGAATTTGGTACGTAGAAGACTTTTATGATAT
ACATGAGTATGATAACTCAGGAGAAATATGTACCAATATTTATGTGAAGT
ACCAGAAGTAGAAAAACCTACCCGTGGTAACAGAGAAAATCAGCCTCTTC
CTGCGGTGAGAAAAATGACAGGAAACTATTGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032864XLOC_032864Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051931-exon-scaffold_206-1575043694:286932..287515TCONS_00051931-exon-scaffold_206-1575043694:286932..287515Clytia hemisphaericaexon
TCONS_00051931-exon-scaffold_206-1575043694:286370..286454TCONS_00051931-exon-scaffold_206-1575043694:286370..286454Clytia hemisphaericaexon
TCONS_00051931-exon-scaffold_206-1575043694:284432..284971TCONS_00051931-exon-scaffold_206-1575043694:284432..284971Clytia hemisphaericaexon
TCONS_00051931-exon-scaffold_206-1510915933:286932..287515TCONS_00051931-exon-scaffold_206-1510915933:286932..287515Clytia hemisphaericaexon
TCONS_00051931-exon-scaffold_206-1510915933:286370..286454TCONS_00051931-exon-scaffold_206-1510915933:286370..286454Clytia hemisphaericaexon
TCONS_00051931-exon-scaffold_206-1510915933:284432..284971TCONS_00051931-exon-scaffold_206-1510915933:284432..284971Clytia hemisphaericaexon
TCONS_00051931-exon-scaffold_206-1491911889:286932..287515TCONS_00051931-exon-scaffold_206-1491911889:286932..287515Clytia hemisphaericaexon
TCONS_00051931-exon-scaffold_206-1491911889:286370..286454TCONS_00051931-exon-scaffold_206-1491911889:286370..286454Clytia hemisphaericaexon
TCONS_00051931-exon-scaffold_206-1491911889:284432..284971TCONS_00051931-exon-scaffold_206-1491911889:284432..284971Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_206supercontigscaffold_206:284432..287515 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0886944	0.0518946	0.0200849	0.0785996	0.0239219	0	0.21364	0.300011	0.070015	0.203673	0.0718874	0.0553348	0.0552579	0.318549	0.0235895	0	0.159798	0.13649	0.169711	0.355181	0.668887	0.527035	0.345764	0.721154	0.476136	0.835948	0	0	0.0196888	0.0401195
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051931 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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