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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051930 ID=TCONS_00051930|Name=TCONS_00051930|organism=Clytia hemisphaerica|type=transcript|length=732bp
ATGGGACCACAATTTTGTTATCCTAAAGAAAGTAATGGGAAACATTTCAA
AGATTCAGTTTGGGAAAGACAAAATATACGAGTTGTATGTTTCGAAAACA
AAGACAACAGATACGGCAAATTTCACCTTCAAAGAAAAGGTCGAGTTGTT
GCATTCAAACTGGATTATGTATCTGGTTACTTAAAACTTGGCTTACTACC
AGGGCAAACATATTGGGGTGCTTATCCTTATAGAGAAGAAAAATGGATTG
GTATAATCATTTGTGATGACAGATATGATATCATTGTGCCTAATGTAAAA
TTAAAAGCATCGAAACGTTATTATACTGTTCCCAATTATCTCCATAATTC
TAAAGAGTTCGTCGTCGAGATCCCGGATTCACCGTATGATGGAGATAAAG
GCAAAGAGTTACAGATCTGGCATTCAGAGGATTTCTTCGCTAACGGTTTT
GACTTAAGAGAAAAAGATAATTCCGGAAAGATTTGCGTCAATGTTTACGC
TAAATTTGtatgaaaagtttgaaacaaatcgttgtaaaatatttttttca
ttttaatacgTATGTTGATTGATTTTATTCTTCTAAATTTTTGTTACAAC
ATTTGATGAAAGGTCACAGTGTCAAACTATTGAGTTTCGAGcgcgaaggg
ctagaggcgaaactccTGTATGAGAAATGAAACCACttgtttcccatcca
gaacgcccgcacgtagtttttacacaaacgcc Run BLAST on NCBI protein sequence of TCONS_00051930-protein >TCONS_00051930-protein ID=TCONS_00051930-protein|Name=TCONS_00051930-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
MGPQFCYPKESNGKHFKDSVWERQNIRVVCFENKDNRYGKFHLQRKGRVV
AFKLDYVSGYLKLGLLPGQTYWGAYPYREEKWIGIIICDDRYDIIVPNVK
LKASKRYYTVPNYLHNSKEFVVEIPDSPYDGDKGKELQIWHSEDFFANGF
DLREKDNSGKICVNVYAKFV Run BLAST on NCBI transcript from alignment at scaffold_206:278037..279924- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051930 ID=TCONS_00051930|Name=TCONS_00051930|organism=Clytia hemisphaerica|type=transcript|length=1888bp|location=Sequence derived from alignment at scaffold_206:278037..279924- (Clytia hemisphaerica)
ATGGGACCACAATTTTGTTATCCTAAAGAAAGTAATGGGAAACATTTCAA
AGATTCAGGTATGTAAAGATCAAGCGATGAAGGGTTCTTTTGGGACCCAC
AATTGGGCTATTCCAGAAATAGTTTGTGACCCTCATGTTGAGGAGGTGCG
ACGTCTAGGGTGGTCTGGAAAATAAAAAATCCAGGGTGGTCAGTATAACG
AGGTCGAAAATCAAGGGTGGTCCAAAGAAATTGGAGAAAAAAATCCAAGG
GGGTCCTGAAAAATTGGAAAAAATCCAGGGGGACACCTTTTTAAAAAAAG
ATCTCCTCAACATAGGGTACAACTTTTTCTGGACTAGCCCATTATTGCAA
TAGCGAGATTATGGATCTAGTCTTTTGAGGATGGCGGAAACGCGAGTTTA
AGCTTCAAAATCGAGGGCAGTAAAAGTGCAGACTTACCATTGCTTTCAAT
CTCCCGGCTGACGCCGGGGAGGGGCACTCGATTTTAAACGACGGTAAGTG
TCGCCAAAAAATGGCTTATTCAAAATCTGACCCTTACAATACCGAACGTT
TCTGACCCTTACAGCGTAGTTTGATTTTATATCTTATTTTGCTGAAGCCA
CTTGATGAAAATTATGAGCCCGAGATGTCGACACAATGTTAAAAGCAAAT
AAGAATGGGTGAGAATCAAAACTATTAAGATGCATCAGATTTTTACTGTC
AGACTGATTTTACTGAATTCAGCACTGATTACACCCTTACAGTGTATTCA
GCTAAAATACCATATAGCACCCCCGGGCTCCAACGACAGCCACCATATGG
ATGAAAATAGTTATTTATTAGGCGAAAATATAAAAATGTAGTGTTTCCAG
AATGCGGGTGAAGGAAAAAAGCTCTCATGCGGCCGGTCGGAAAAAATTTT
GTTTTTTGCTATTTTTGATAACTTAAGATCATTGAAATAGGACTTTAAAG
ATAAATTTTATGTACAAACTATGAATACTAATGTATTAACTACTTGTATC
AATGTATCAAAAACTTGATTTACAAGCGGGAATATCTAACCAAACGACGT
TTGATAGCTTGAACGGTCAACTTTTCTTTATGATGAACCATTTAGATGAA
CCCATAGTCTGCGGCCGGGTCAGAAAAATCTTTTTTTTTCAACCGGCCGG
TTTCTGGAAACACTACATTTTTTTATTTTCGCCTTAGCACAATGTTTTTA
TATTTTGATTTCAGTTTGGGAAAGACAAAATATACGAGTTGTATGTTTCG
AAAACAAAGACAACAGATACGGCAAATTTCACCTTCAAAGAAAAGGTCGA
GTTGTTGCATTCAAACTGGATTATGTATCTGGTTACTTAAAACTTGGCTT
ACTACCAGGGCAAACATATTGGGGTGCTTATCCTTATAGAGAAGAAAAAT
GGATTGGTATAATCATTTGTGATGACAGATATGATATCATTGTGCCTAAT
GTAAAATTAAAAGCATCGAAACGTTATTATACTGTTCCCAATTATCTCCA
TAATTCTAAAGAGTTCGTCGTCGAGATCCCGGATTCACCGTATGATGGAG
ATAAAGGCAAAGAGTTACAGATCTGGCATTCAGAGGATTTCTTCGCTAAC
GGTTTTGACTTAAGAGAAAAAGATAATTCCGGAAAGATTTGCGTCAATGT
TTACGCTAAATTTGTATGAAAAGTTTGAAACAAATCGTTGTAAAATATTT
TTTTCATTTTAATACGTATGTTGATTGATTTTATTCTTCTAAATTTTTGT
TACAACATTTGATGAAAGGTCACAGTGTCAAACTATTGAGTTTCGAGCGC
GAAGGGCTAGAGGCGAAACTCCTGTATGAGAAATGAAACCACTTGTTTCC
CATCCAGAACGCCCGCACGTAGTTTTTACACAAACGCC Coding sequence (CDS) from alignment at scaffold_206:278037..279924- >TCONS_00051930 ID=TCONS_00051930|Name=TCONS_00051930|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_206:278037..279924- (Clytia hemisphaerica)
TTTGGGAAAGACAAAATATACGAGTTGTATGTTTCGAAAACAAAGACAAC
AGATACGGCAAATTTCACCTTCAAAGAAAAGGTCGAGTTGTTGCATTCAA
ACTGGATTATGTATCTGGTTACTTAAAACTTGGCTTACTACCAGGGCAAA
CATATTGGGGTGCTTATCCTTATAGAGAAGAAAAATGGATTGGTATAATC
ATTTGTGATGACAGATATGATATCATTGTGCCTAATGTAAAATTAAAAGC
ATCGAAACGTTATTATACTGTTCCCAATTATCTCCATAATTCTAAAGAGT
TCGTCGTCGAGATCCCGGATTCACCGTATGATGGAGATAAAGGCAAAGAG
TTACAGATCTGGCATTCAGAGGATTTCTTCGCTAACGGTTTTGACTTAAG
AGAAAAAGATAATTCCGGAAAGATTTGCGTCAATGTTTACGCTAAATTTG
TATGAATGGGACCACAATTTTGTTATCCTAAAGAAAGTAATGGGAAACAT
TTCAAAGATTCAGTTTGGGAAAGACAAAATATACGAGTTGTATGTTTCGA
AAACAAAGACAACAGATACGGCAAATTTCACCTTCAAAGAAAAGGTCGAG
TTGTTGCATTCAAACTGGATTATGTATCTGGTTACTTAAAACTTGGCTTA
CTACCAGGGCAAACATATTGGGGTGCTTATCCTTATAGAGAAGAAAAATG
GATTGGTATAATCATTTGTGATGACAGATATGATATCATTGTGCCTAATG
TAAAATTAAAAGCATCGAAACGTTATTATACTGTTCCCAATTATCTCCAT
AATTCTAAAGAGTTCGTCGTCGAGATCCCGGATTCACCGTATGATGGAGA
TAAAGGCAAAGAGTTACAGATCTGGCATTCAGAGGATTTCTTCGCTAACG
GTTTTGACTTAAGAGAAAAAGATAATTCCGGAAAGATTTGCGTCAATGTT
TACGCTAAATTTGTATGAATGGGACCACAATTTTGTTATCCTAAAGAAAG
TAATGGGAAACATTTCAAAGATTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051930-exon-scaffold_206-1575043694:279867..279924 | TCONS_00051930-exon-scaffold_206-1575043694:279867..279924 | Clytia hemisphaerica | exon |
| TCONS_00051930-exon-scaffold_206-1575043694:278037..278710 | TCONS_00051930-exon-scaffold_206-1575043694:278037..278710 | Clytia hemisphaerica | exon |
| TCONS_00051930-exon-scaffold_206-1510915933:279867..279924 | TCONS_00051930-exon-scaffold_206-1510915933:279867..279924 | Clytia hemisphaerica | exon |
| TCONS_00051930-exon-scaffold_206-1510915933:278037..278710 | TCONS_00051930-exon-scaffold_206-1510915933:278037..278710 | Clytia hemisphaerica | exon |
| TCONS_00051930-exon-scaffold_206-1491911889:279867..279924 | TCONS_00051930-exon-scaffold_206-1491911889:279867..279924 | Clytia hemisphaerica | exon |
| TCONS_00051930-exon-scaffold_206-1491911889:278037..278710 | TCONS_00051930-exon-scaffold_206-1491911889:278037..278710 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_206 | supercontig | scaffold_206:278037..279924 - |
Blast
The following BLAST results are available for this feature:
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