TCONS_00051928 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051928
Unique NameTCONS_00051928
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length883

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051928 ID=TCONS_00051928|Name=TCONS_00051928|organism=Clytia hemisphaerica|type=transcript|length=883bp
GAAAGATACGAATTTTTCTCTCAAATAAATTTGGACGGAATTCTGATAGA
ATTCTAGTTTAATATTGCATTCAACTGGTCCGCAGGTCGGTAGCAGgtga
attgaaaataaaaatgttgttgGAAATAACTTTTGTCGTTTTGTCATTCT
CTCTTGTTAGCGCAAGAAgCTGCTCACAAGGAAACCATTATTACTGCAGA
CAGTACCAACAGAACCCTCATTATTATTGTCGTTACCAATGGGCGAAACA
AAATTGTCCGCATATGTGTGAAAGATGTAATAACAACGTTTGTAGAGACA
ATAGCTACCAATGCGAGAATTACCGGCCAAACAAAGACATTTTGTGTGGA
TATCCATGGCTGAAAGAGAATTGTAAACAAATGTGTGATTTATGCCCTGA
TATTGGACCAAAATGTAAAGATCACCGACACTGCGAGAGCTATCGTCCAA
ACAAGAAATATTATTGTACACATGAATGGACTCAAAAGAATTGCAAAACA
CTATGTGGACTATGTCAAGtcAAAACAACAACACGACCTACAACGACAAC
GACAACGACTCCTCCGACTACAAGAAGAACCACTCAACCTCCTCAAACAA
CGGAACAACCGGGATCCGGGTATGGTTCCGGCAATTTTATGGATAATGAG
CATTTTGAATTCGATAGCTAAAGAAGGGAAATTCACTGTGTAATCACGAA
GAACCGTCTTTGATATCTGATATTGTGTTAAGTTTatgtaaatattgaaa
atgaagaattacaaaataaattgattttgTGACAGTTgctctttttttta
tttattcagcTATCTCCCACAATCTAACCCTTATTTTCTAATTTCAGAAC
TTTTTATCCGACGTTtttaattacacgtttttt
Run BLAST on NCBI

protein sequence of TCONS_00051928-protein

>TCONS_00051928-protein ID=TCONS_00051928-protein|Name=TCONS_00051928-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MLLEITFVVLSFSLVSARSCSQGNHYYCRQYQQNPHYYCRYQWAKQNCPH
MCERCNNNVCRDNSYQCENYRPNKDILCGYPWLKENCKQMCDLCPDIGPK
CKDHRHCESYRPNKKYYCTHEWTQKNCKTLCGLCQVKTTTRPTTTTTTTP
PTTRRTTQPPQTTEQPGSGYGSGNFMDNEHFEFDS
Run BLAST on NCBI

transcript from alignment at scaffold_206:265968..269681-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051928 ID=TCONS_00051928|Name=TCONS_00051928|organism=Clytia hemisphaerica|type=transcript|length=3714bp|location=Sequence derived from alignment at scaffold_206:265968..269681- (Clytia hemisphaerica)
GAAAGATACGAATTTTTCTCTCAAATAAATTTGGACGGAATTCTGATAGA
ATTCTAGTTTAATATTGCATTCAACTGGTCCGCAGGTCGGTAGCAGGTGA
ATTGAAAATAAAAATGTTGTTGGAAATAACTTTTGTCGTTTTGTCATTCT
CTCTTGTTAGCGCAAGAAGTAAGTATATAAAGGCATTGAGATCACGATTT
TTACCATAAAACCGTTCTTGGAATCAAGCTTTTTTTCGATTTTTTTATGC
TCGAATGCACTTTTTCGACCGTAGTCACGCGGTCAGGTGCGTGCCACTTT
ATTATTTAATTTACCACCCACCCTAAACTCGATCCAATCCTTTTTTTACA
CTTTTTTCTATTGTCTTTAGGTGCGAAAAAAAACTGGGACGGTTTTAGGG
TGGTAAAACGGACAAAAAATGCATGCGCGGCAATCGGCAGCTACGGTCGA
AAAGGGGTATTGGACTGACACAGATTTAAGAATTATACCTACCAAGTCTT
TTTATCTTTTGTGTGTGTTAAAGAAGAGATGACGAAGTTAACAATATCGA
TAGTGAAAGGTATTTCAAACAAAGAAGGAGTCCTCCAATTTTTGAAGCGA
TTTTCAAATTCAACTAATTTGCTGAGTAATATTATCATTATCCTTATCAT
CTTACGATACACGTATTTTTTATAAGAACAAACTATATAAGAACATAAGG
CTTCGATGGCACAAATGTTAAGAACAAGTTAAGAACATTTTAAGGCCAAA
AGCACCAACATCCAAAGTCAAAATATCATCAAATATTATTTTTCAGGCTG
CTCACAAGGAAACCATTATTACTGCAGACAGTACCAACAGAACCCTCATT
ATTATTGTCGTTACCAATGGGCGAAACAAAATTGTCCGCATATGTGTGAA
AGATGTAATAACAGTAAGTACAATTGATTGATATTGATGTCTGTCACGTG
GTTCAAGTCAAGATGACCTTAATAAGGGAAGAAATTTCCCCGGACAAATC
CTCGAAATTAAATTCAGCGAAACATGAATATTCTCAGGATTAAAAAATAA
TCACCTTTGAAATTTATGGCAAAATAGACCTTCCCGTGAAAAAATGTCTT
CCCTTAAAGAGTAGAGACGTCACTAAACTTTTCCTAAGGCAAACACGATG
CAAGAGGAGGATTCGGGATGGTGCAGCCTACAAACTTTGTTTAGCTTTGG
GAAATTGTAAGGTGGTGTAATGTTTTTTTGGGAGGAAAGGAGAGCTAAGC
CCCTGAACAAAGATATGCCGTGCTCATTTGAGCGTTAGCGAGTTTATGTA
TCTACCCTTTTGAGGAAGGCAAAACCACTATTGCCATAATGGTGTAATAG
ACCTTTTCGCCACCGATTTATTTTACATACAAGCAGTTGAAATGTGTTTC
GTTGGGCTAACAGCTTAATGACAAATAGAATAACCAGAAGCATTTTTTGT
TAATAATAAAAAACAAAAATGCTTCTGGTTATTCTATTTGTCATACAAGC
AGTTATTTTTCATACAAATCATAGATTGCCGAAACAGATTTGCATAGTTT
TGCATAAATGACATCATTTTCGAAATGGTTTATCTTTTTTCAATCTATGA
TTTGTATAAAAAATGGCTGCTTGCATATAAATGAAATCAAAAGCGAAAAG
TTCTATTAGGTTTATTAAAACGAAGGATACGATAAACCACCAGGCCTATG
AGACTAACCTAAAGTAAAACAAACTGGATGAAGACCTTTTTCGGATAAAT
CGACTTTCTATTCAAGCTTCATGTTCTCCTTCTTCTTCTCTTTGCAGACG
TTTGTAGAGACAATAGCTACCAATGCGAGAATTACCGGCCAAACAAAGAC
ATTTTGTGTGGATATCCATGGCTGAAAGAGAATTGTAAACAAATGTGTGA
TTTATGCCCTGATATTGGTGAGAAATTTGTTTCATCTGGCTGAGGAAGAA
TTCCATTGTAACTTTATACTACAGCGGAGTCTCTATAACTCGAACTTCTA
CAACCCAAGTATTTTATTAACTCCATAACTCGAAATTTCCTTCACTCACT
TCATTTCCTTCAAATTCACGTTCCCCGTTCGTGTTCGAATATAATGACTC
CATTATATTTATCACAGACCCACTTTGAATTATAGAAAACTAGAAAAGAT
TGTAAAATTTACTCTACTCTTGTCACTGGTGAGGAAGTTACTGTCAATGG
AGTATTCCTACAGTCTCAATAACTAGAGCACCGTATTGTGAACAAAAATT
TGTTAGAGTTAAGGAGACATTTGAATTATAGAATTGAAGAGACTCTACTG
TACTAGCTTGCTGACCTGTAAATAAGAGAAATCGAAATGCCTTTTTATTG
CGGTTATATATATTCTTTTCCGGTTACTGAGAAAGGGGTGTTGAATACTT
CGAAAAAGACGACTCTAAAGTTTTGATTGACTGTTTCGCTTGGAACCCGA
AGTAAATTTTACTATCAGATTTCCCAACCTACTTTTCCTCCTACTTTCAC
TGTTCCGCTTTATGTCCATTGGTCCTGTAAAGCTTCATGATCTGAAGAGC
CTTGTAAGAGGAATCATGTTAATATAATTTCGATGTTAATTTCAGGACCA
AAATGTAAAGATCACCGACACTGCGAGAGCTATCGTCCAAACAAGAAATA
TTATTGTACACATGAATGGACTCAAAAGAATTGCAAAACACTATGTGGAC
TATGTCAAGGTAAAAATAAGTGGAAGTAAGCCCAATGTTGGCCCAAAACA
TCTTAACAATCCCATAGCCAAAAATAACAAAGAGCTTGCATAGTGTCCTC
CCCCTGGATTCAGATAGGGGTGGACTTTTGAAAGAAGACCAAGTATGGGG
GAGAAGAAACTTTTTTGGAGCCAGGGGTGGGACAAATTTAGGGAGGGGAG
AAGGATTTCACAGATCATCCAGAGGAGGGGAGCAACTTAAAGGCCCTTTT
TCTTGCTTTCAGATATAAAAATTTGTAGTAAAAAGTATCAAAATGAGCAA
TTTTTAAGTAAAAATCCAAAATTGAAGGTATTTTGAGCCCATCGAAAATA
TTGAGAGCCAGTGAGGGGAAAACTTGAAAATTTTCACTTTAGATATAGAG
GGGGACATACTCTGAGTGTCGGCTTGGAGTTGTGTTCACTTTGGTTATCT
TTCAGAGCTGATTAAACGCCCCCTTCTTTAAAACGCCCCTTGAATTAATG
CCCCTCATTGAAGGGACATTTTTCACTAAACACACCCTTCAAGAAACGGG
GTGTTTATTCGAAGAAATACGGTGTGTTAATACAATGATATCAGCCATTT
CTCACGTGTTCACTCGAACCTTAACCTTTTCCATACTTTTATATTTTTAG
TCAAAACAACAACACGACCTACAACGACAACGACAACGACTCCTCCGACT
ACAAGAAGAACCACTCAACCTCCTCAAACAACGGAACAACCGGGATCCGG
GTATGGTTCCGGCAATTTTATGGATAATGAGCATTTTGAATTCGATAGCT
AAAGAAGGGAAATTCACTGTGTAATCACGAAGAACCGTCTTTGATATCTG
ATATTGTGTTAAGTTTATGTAAATATTGAAAATGAAGAATTACAAAATAA
ATTGATTTTGTGACAGTTGCTCTTTTTTTTATTTATTCAGCTATCTCCCA
CAATCTAACCCTTATTTTCTAATTTCAGAACTTTTTATCCGACGTTTTTA
ATTACACGTTTTTT

Coding sequence (CDS) from alignment at scaffold_206:265968..269681-

>TCONS_00051928 ID=TCONS_00051928|Name=TCONS_00051928|organism=Clytia hemisphaerica|type=CDS|length=2790bp|location=Sequence derived from alignment at scaffold_206:265968..269681- (Clytia hemisphaerica)
TCAAAACAACAACACGACCTACAACGACAACGACAACGACTCCTCCGACT
ACAAGAAGAACCACTCAACCTCCTCAAACAACGGAACAACCGGGATCCGG
GTATGGTTCCGGCAATTTTATGGATAATGAGCATTTTGAATTCGATAGCT
AAGACCAAAATGTAAAGATCACCGACACTGCGAGAGCTATCGTCCAAACA
AGAAATATTATTGTACACATGAATGGACTCAAAAGAATTGCAAAACACTA
TGTGGACTATGTCAAGACGTTTGTAGAGACAATAGCTACCAATGCGAGAA
TTACCGGCCAAACAAAGACATTTTGTGTGGATATCCATGGCTGAAAGAGA
ATTGTAAACAAATGTGTGATTTATGCCCTGATATTGGCTGCTCACAAGGA
AACCATTATTACTGCAGACAGTACCAACAGAACCCTCATTATTATTGTCG
TTACCAATGGGCGAAACAAAATTGTCCGCATATGTGTGAAAGATGTAATA
ACAATGTTGTTGGAAATAACTTTTGTCGTTTTGTCATTCTCTCTTGTTAG
CGCAAGAATCAAAACAACAACACGACCTACAACGACAACGACAACGACTC
CTCCGACTACAAGAAGAACCACTCAACCTCCTCAAACAACGGAACAACCG
GGATCCGGGTATGGTTCCGGCAATTTTATGGATAATGAGCATTTTGAATT
CGATAGCTAAGACCAAAATGTAAAGATCACCGACACTGCGAGAGCTATCG
TCCAAACAAGAAATATTATTGTACACATGAATGGACTCAAAAGAATTGCA
AAACACTATGTGGACTATGTCAAGACGTTTGTAGAGACAATAGCTACCAA
TGCGAGAATTACCGGCCAAACAAAGACATTTTGTGTGGATATCCATGGCT
GAAAGAGAATTGTAAACAAATGTGTGATTTATGCCCTGATATTGGCTGCT
CACAAGGAAACCATTATTACTGCAGACAGTACCAACAGAACCCTCATTAT
TATTGTCGTTACCAATGGGCGAAACAAAATTGTCCGCATATGTGTGAAAG
ATGTAATAACAATGTTGTTGGAAATAACTTTTGTCGTTTTGTCATTCTCT
CTTGTTAGCGCAAGAATCAAAACAACAACACGACCTACAACGACAACGAC
AACGACTCCTCCGACTACAAGAAGAACCACTCAACCTCCTCAAACAACGG
AACAACCGGGATCCGGGTATGGTTCCGGCAATTTTATGGATAATGAGCAT
TTTGAATTCGATAGCTAAGACCAAAATGTAAAGATCACCGACACTGCGAG
AGCTATCGTCCAAACAAGAAATATTATTGTACACATGAATGGACTCAAAA
GAATTGCAAAACACTATGTGGACTATGTCAAGACGTTTGTAGAGACAATA
GCTACCAATGCGAGAATTACCGGCCAAACAAAGACATTTTGTGTGGATAT
CCATGGCTGAAAGAGAATTGTAAACAAATGTGTGATTTATGCCCTGATAT
TGGCTGCTCACAAGGAAACCATTATTACTGCAGACAGTACCAACAGAACC
CTCATTATTATTGTCGTTACCAATGGGCGAAACAAAATTGTCCGCATATG
TGTGAAAGATGTAATAACAATGTTGTTGGAAATAACTTTTGTCGTTTTGT
CATTCTCTCTTGTTAGCGCAAGAATCAAAACAACAACACGACCTACAACG
ACAACGACAACGACTCCTCCGACTACAAGAAGAACCACTCAACCTCCTCA
AACAACGGAACAACCGGGATCCGGGTATGGTTCCGGCAATTTTATGGATA
ATGAGCATTTTGAATTCGATAGCTAAGACCAAAATGTAAAGATCACCGAC
ACTGCGAGAGCTATCGTCCAAACAAGAAATATTATTGTACACATGAATGG
ACTCAAAAGAATTGCAAAACACTATGTGGACTATGTCAAGACGTTTGTAG
AGACAATAGCTACCAATGCGAGAATTACCGGCCAAACAAAGACATTTTGT
GTGGATATCCATGGCTGAAAGAGAATTGTAAACAAATGTGTGATTTATGC
CCTGATATTGGCTGCTCACAAGGAAACCATTATTACTGCAGACAGTACCA
ACAGAACCCTCATTATTATTGTCGTTACCAATGGGCGAAACAAAATTGTC
CGCATATGTGTGAAAGATGTAATAACAATGTTGTTGGAAATAACTTTTGT
CGTTTTGTCATTCTCTCTTGTTAGCGCAAGAATCAAAACAACAACACGAC
CTACAACGACAACGACAACGACTCCTCCGACTACAAGAAGAACCACTCAA
CCTCCTCAAACAACGGAACAACCGGGATCCGGGTATGGTTCCGGCAATTT
TATGGATAATGAGCATTTTGAATTCGATAGCTAAGACCAAAATGTAAAGA
TCACCGACACTGCGAGAGCTATCGTCCAAACAAGAAATATTATTGTACAC
ATGAATGGACTCAAAAGAATTGCAAAACACTATGTGGACTATGTCAAGAC
GTTTGTAGAGACAATAGCTACCAATGCGAGAATTACCGGCCAAACAAAGA
CATTTTGTGTGGATATCCATGGCTGAAAGAGAATTGTAAACAAATGTGTG
ATTTATGCCCTGATATTGGCTGCTCACAAGGAAACCATTATTACTGCAGA
CAGTACCAACAGAACCCTCATTATTATTGTCGTTACCAATGGGCGAAACA
AAATTGTCCGCATATGTGTGAAAGATGTAATAACAATGTTGTTGGAAATA
ACTTTTGTCGTTTTGTCATTCTCTCTTGTTAGCGCAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032861XLOC_032861Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051928-exon-scaffold_206-1575043694:269514..269681TCONS_00051928-exon-scaffold_206-1575043694:269514..269681Clytia hemisphaericaexon
TCONS_00051928-exon-scaffold_206-1575043694:268769..268885TCONS_00051928-exon-scaffold_206-1575043694:268769..268885Clytia hemisphaericaexon
TCONS_00051928-exon-scaffold_206-1575043694:267765..267884TCONS_00051928-exon-scaffold_206-1575043694:267765..267884Clytia hemisphaericaexon
TCONS_00051928-exon-scaffold_206-1575043694:266973..267086TCONS_00051928-exon-scaffold_206-1575043694:266973..267086Clytia hemisphaericaexon
TCONS_00051928-exon-scaffold_206-1575043694:265968..266331TCONS_00051928-exon-scaffold_206-1575043694:265968..266331Clytia hemisphaericaexon
TCONS_00051928-exon-scaffold_206-1510915933:269514..269681TCONS_00051928-exon-scaffold_206-1510915933:269514..269681Clytia hemisphaericaexon
TCONS_00051928-exon-scaffold_206-1510915933:268769..268885TCONS_00051928-exon-scaffold_206-1510915933:268769..268885Clytia hemisphaericaexon
TCONS_00051928-exon-scaffold_206-1510915933:267765..267884TCONS_00051928-exon-scaffold_206-1510915933:267765..267884Clytia hemisphaericaexon
TCONS_00051928-exon-scaffold_206-1510915933:266973..267086TCONS_00051928-exon-scaffold_206-1510915933:266973..267086Clytia hemisphaericaexon
TCONS_00051928-exon-scaffold_206-1510915933:265968..266331TCONS_00051928-exon-scaffold_206-1510915933:265968..266331Clytia hemisphaericaexon
TCONS_00051928-exon-scaffold_206-1491911889:269514..269681TCONS_00051928-exon-scaffold_206-1491911889:269514..269681Clytia hemisphaericaexon
TCONS_00051928-exon-scaffold_206-1491911889:268769..268885TCONS_00051928-exon-scaffold_206-1491911889:268769..268885Clytia hemisphaericaexon
TCONS_00051928-exon-scaffold_206-1491911889:267765..267884TCONS_00051928-exon-scaffold_206-1491911889:267765..267884Clytia hemisphaericaexon
TCONS_00051928-exon-scaffold_206-1491911889:266973..267086TCONS_00051928-exon-scaffold_206-1491911889:266973..267086Clytia hemisphaericaexon
TCONS_00051928-exon-scaffold_206-1491911889:265968..266331TCONS_00051928-exon-scaffold_206-1491911889:265968..266331Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051928-proteinTCONS_00051928-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_206supercontigscaffold_206:265968..269681 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.157913	0.05133	0.059599	0.0583083	0.922802	0.785303	0.473718	0.696911	0.887134	1.1538	1.01325	0.525845	28.7062	28.3575	14.9148	35.3476	4.89984	4.65767	78.6726	82.0325	27.5331	29.5652	55.8871	75.7753	66.4047	66.2755	0	0.0770288	0.116847	0.357147
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003582ShKT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051928 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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