TCONS_00051919 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051919
Unique NameTCONS_00051919
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length809

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051919 ID=TCONS_00051919|Name=TCONS_00051919|organism=Clytia hemisphaerica|type=transcript|length=809bp
CTGACCTTGTGCATCGCTTCACAAGGCTTTGTCGTGTTTACCTATCAACG
TAAAcaacaattatttttttatagataTATAATATCTTCTCTTGGATTTG
TCGCTTATCATTTTACGCTTAACACTCAAAATGAGAACAagtatttttat
cttttgtctCCTATTTGGAGtaatCTTTGCCAAGTCATGCTTGGACGAGG
TTAAAGAATTGGAAGCTAAACCACCTATGGTTGGCGCTTACAAACCCATC
TGCCAAACCAATGGTCTTTATGCTGAAACACAATACCACGCTAGTTACTA
TTTCTGTGTCAACCCGAAAACTGGTGAAAAGATCTTGGGAACCGATGTTC
GTTTCCGAAAACCGTCATCATGCAAAACCACACcaTGTATGTTACAACGT
CACCAGGGTATGTTGAACTCCAAGCAAGGAATGGTCGGTCATTTTACACC
ACAATGTGAAGAAGACGGTTCTTTCAAGAAAGTTCAATGTCATGCTTCCA
CTGGCTTTTGTTATTGTGTTGTACCTGAAACTGGAGCTAAAGTCGTCGGA
ACTGAAGTCCGTGGAAAGCCAACCAACTGTGAAGCTACAGGTGTCAATAA
CGCCAAGACATGCTTGAAACATTTGCAAGAATTAGATGCCAAACCAGCAT
TGTTGGGAGCTTTCCGACCAGTCTGTCAAGCTAATGGACTTTACGCTGAA
ACACAATGTCATGgTTCCACAGGATTTTGCTTCTGTGTTGTACCAGAAAC
TGGCAAAAAGATTTTGGGAACTGAAATTCGTGGAAAACCAAAATCATGCA
GAGCTACAC
Run BLAST on NCBI

transcript from alignment at scaffold_206:195199..202010-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051919 ID=TCONS_00051919|Name=TCONS_00051919|organism=Clytia hemisphaerica|type=transcript|length=6812bp|location=Sequence derived from alignment at scaffold_206:195199..202010- (Clytia hemisphaerica)
CTGACCTTGTGCATCGCTTCACAAGGCTTTGTCGTGTTTACCTATCAACG
TAAACAACAATTATTTTTTTATAGATATATAATATCTTCTCTTGGATTTG
TCGCTTATCATTTTACGCTTAACACTCAAAATGAGAACAAGTATTTTTAT
CTTTTGTCTCCTATTTGGAGGTAAGTTAATACTTTTGTTCATTCGTTATT
TAGTTTTCCTTTGGTTTTCTTTCCTTTGGATCACTCGAATCTCAGCTCGA
ATATGTATCACTTTTACGCGAACATTTTGTTTTTGTTTTTTAATTTAGGC
GAGAACTTGTTTTGGCGTGGCAGTAACTGATTTAATTTTGGCGAGAACTA
ATTCGCTGGCACTAGTTACCTTCGAATAGTGGGGAAATTTGTTTAACTCG
AAATACACATATACAAGGAATTATAGTTTCAGTTTGATGTGGGATAATTT
TGGTTTGACATCTGTTGACATGGCTTACTTAGAAATTGAATGACTTGCTT
TTTTATTTTCAGTAATCTTTGCCAAGTCATGCTTGGACGAGGTTAAAGAA
TTGGAAGCTAAACCACCTATGGTTGGCGCTTACAAACCCATCTGCCAAAC
CAATGGTCTTTATGCTGAAACACAATACCACGGTAAGTCCTAAGATCGTG
TTGGATGATCTGGTCTTGGATTGAATAATTGTCTGTTACATTTTTGTATT
AATTTTTACTACACTTACTTAAAACAAAACGGTGACTTTGAGGTCAAAAC
AGTACACATATCTTTCTTTTTTAGAACCAAAAGATACACGTTATTTTATA
AGAACAATCTGTATAAAAACATAAGACTTCGGTGGCCAAAATGTTAACCC
AAATTTATCTGGTCCCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCAGGGGGTTAAAAATCAAAATGTCCAGGGGT
AATGCATGAAAAAAATAATATATCCTCCACCCCCCATGAACGGATTTTTT
CTGGAAGAGCCCATTTCTGGTCGATGTTTAGAAACTCCCATATTTTTATT
TTGTCCAGTTATGTTTTATGTGTTTCATTGTTTCAATGTTCATTGATTAG
TTTTGATAATCAGGTAGGTCCATAAAAGTATGACTTGTTTTATTTCCGCT
TCAAGCGATAACTTCGTTTTTTATTTCAGCTAGTTACTATTTCTGTGTCA
ACCCGAAAACTGGTGAAAAGATCTTGGGAACCGATGTTCGTTTCCGAAAA
CCGTCATCATGCAAAACCACACGTAAGAATGCTATTTCTTCATATAGAAA
GAAGAAAGAGCTATAGCCTGGAGATTCATGCTATTACTTCTTCTTTTTAT
ATACTGATGTTGACATGAAATAGCATGGTTCGGGTTAAGAGTTTGAATTT
CCCAGATTCTAATGACGGTTGAAAACACAACCAATCAAATTTTGTTATTC
TGTCACTGGTCACATTTTCTTAGAGAAAACGCAAGTTCCGAAATTTGGTT
TTAATTTCAGTAAGCGAGGACAGTGCTAAATTCGAATATCCCACTGTAAA
TTTTTTGAGGTAGAAATCTGCCTCACAGCTCAAACCCGTCCTGTATATAT
CAGATTATAAAAATCTCCTGTCTAGAATAGCTAGAGAAGAAGGAATCCAC
TATTCGTTATTAACCAAGTTTTTGTTTTTGCACTTTTGAGGACAGCGGAA
TTATTCAATCAATTTGGAATAACCCGCAATTTTGACAACACAAACTCGCT
ATTATTTGAAATTTACCGGATATCATAATTCAAAATTAATAATTGTTCTA
ATGTTGTTCAAATTATTTTCAGCATGTATGTTACAACGTCACCAGGGTAT
GTTGAACTCCAAGCAAGGAATGGTCGGTCATTTTACACCACAATGTGAAG
AAGACGGTTCTTTCAAGAAAGTTCAATGTCATGGTATGTTGTAATTTAAT
CCAATCGAAATCTAAAATCCAATTCAAATTTCACCAATATCTAAGATTAG
AGAAATGATTTATGTTTTTTTACCAGTGGTTAATTTGAATTTTCTAATGA
AAAGATTTTACGTGTGAACATCCAATTGGGTCGACTTCTGAGATGGACTA
GGGTTTTGCATGATGCAGATAGACTTCTTTTGGCTTCTAGGCCGAAAATC
ATACAATGCTTATTAAACCTTAGAAATTTTCATTAATGACCTGTTTTCTT
TATTTATGTAATACTCTCGGGTACCTAATAGCCGCTCCCCCCCCCCCCCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCC
CCCCCCCCCCCCCCTCCGCTTATTCCAATCCCCCCGGCTATTAGGTACCC
GAGAGTATTTACATATACTTTTGAGATATGAAAAAAAATAATTATTTTTC
TTATACAGCTTCCACTGGCTTTTGTTATTGTGTTGTACCTGAAACTGGAG
CTAAAGTCGTCGGAACTGAAGTCCGTGGAAAGCTAACCAACTGTGAAGCT
ACAGGTTAATTTCAACTTTATGTATTCTTATCATTGTTCACCCTATCTTA
AAAAGCCTGTTAACCGAAAAAAACCTTTTTCCTATATGCCTGATTGTTTA
CTCAAATTACTTTATATGTATTTTTTAGGTGTCAATAACGCCAAGACTTG
CTTGAATCATTTGCAAGAATTAGATGCCAAACCAGCATTGTTGGGAGCTT
TCCGACCAGTCTGTCAAGCTAATGGACTTTACGCTGAAACTCAATGTCAT
GGTATATACCATTGCATAATTTTGTTTGAATTTTAAAGCCTCTCAACAAC
ATTTTACAGAGAGGAGGATTTCAATCTTTCATTAATTATCAGATCAAACA
GACCTTTTAGGACTGAATAAAGTCCGTTTTATGTATTATTTATTGAGGAG
CATCGGCCGAGTAGTCAAGGTGTCAGCATCTCAAACCAGGGGTTTGTGAT
TTGAAGCCCCCCCTCATTCTAATGTTTCGTTAGGTCTTTTGATAGCCCTG
GGGGGGGGGGTACTAGGGTTAGAGGATGAGGGGTATGTGCGGATGGGACC
TATTAAAACCGACCCTTAGAGAGACTGATTTTTGCTGAAAAGGTGACCCT
TAGAGAGACTTTCTTGAAAAGTTTTCTTTGATTTTTGAAAATTTTTTACC
CTTATTTTTCACTCTAAATAAAAAAAAAATCCTAAAAATCGTTTTCCGAC
CCTTAGAGAGACTAATTTAAATTTTTCTGATTTTTGCAACTCTTAAAGAG
ATTTTGTAAGATGAAAAACCGACCCCTACCGTCTGCACATACCCAGCACC
TATTTTTGCCTAATAACCCCCCTCCTCTGATAAACAGCAGAGTCGACTGG
CTGTGGATCCAGTGAAATCAATCAAAAGGGAAAACGAACGAAAGTAAAAA
CAATTGAACGATTTCTAAAAGCCCTACATTACTGGGCTATCCACGTAAAA
TATCGGATCAGTAATCATATTCGTCAACAATTTTGTTTTTTTGTGTTTGT
AGGCTCCACAGGGTTTTGCTTCTGTGTTGTACCAGAAACTGGCAAAAAGA
TTTTGGGAACTGAAATTCGTGGAAAACCANTAGGTTCCACAGGGTTTTGC
TTCTGTGTTGTACCAGAAACTGGCAAAAAGATTTTGGGAACTGAAATTCG
TGGAAAACCAAAATCATGCAAAGCTACACGTGAGATGCGCTTCAATCTAT
TTTTCCTTGTTTAATAGTTGTGTTCTAAAGATTCTTAGACACGAAAGTTT
CATTTTATTATCATATTGTAAGGTTAACAATCCGTAATTCATAGGGCTAA
ACCTGCTTGAGATTGAGGCTTTACCCCTGAGTTGTTTGAAAATAAAAGAC
AAATCAAGTAAAAGAAATAATTTGAAAACTTACTGTATACCGTATTTTCT
CTGTTCAGCACCACTTTCTTTAGAGGCCTGAAATTTACATCTCGTAAATG
ACATCTCGAAAATGGAGGAAATTCATTCACATTTTTACGTTTGCAGACTA
GAAAGTATAATTTATGACTAATTAGTTTTTGTTTTAACTTTCCAGCCTGT
TTATTGGCACGTCACGAAGGATTATCGAAATCACAAAAAATGATGGTGGG
TCATTTCACACCACAATGTGAAGAAGATGGTTCTTTCAAGAAAGTTCAAT
GTCACGGTATGTTGTNACACCACAATGTGAAGAAGATGGTTCTTTCAAGA
AAGTCCAATGTCATGGTATGTTGTTATTGTCATTCTGGTTGCTAATGATG
AGCTATCCCGTAGGGGGCGCACTCGGTCTAAAAACATTCGGGTCTTGAAA
TTGGACCCTGGCAGTACAAAGAAGATTTAACCAAATTTGACCTTTACGGT
GTATTTCCTTGAAAGAATTTCGTCCATTTTTAAAGAAATAATAGTCAGAT
TTTCCAATGTTCTGGCCAAGCATCTTCGTTTTTCTTTAATCTTTAAACCC
TTTTAGTGCAATTTTTCTAATTACGACCCTAAACTTTAGGAGTCTTGAAA
TAACACACCCTTACAATTTTCTTATACAGCTTCCACTGGCTTTTGTTATT
GTGTTGTACCTGAAACTGGAGCTAAAGTCGTCGGAACTGAAGTCCGTGGA
AAGCCAACCAACTGTGAAGCTACAGGTTGATTTCAATTATATATCTTCTT
TTTATTTATCTTATCTTAAAAAAGCCTGTTAACCGAAAAAACTTATTTTA
TTTTGCCTGATTATTTACTCAAATTACTTTACATGTACTTTTAGGTGTCA
ATAACGCCAAGACATGCTTGAAACATTTGCAAGAATTAGATGCCAAACCA
GCATTGTTGGGAGCTTTCCGACCAGTCTGTCAAGCTAATGGACTTTACGC
TGAAACACAATGTCATGGTAAATACCATTGCGTAATTTTGTTTGAATTCA
AACGTTTATGATAAAATTAAAGCCTCTCAACAACAGTTTACAGGGAGGAG
GATTTTATCATTCATTATCAGATCAAGCAGATCTTTGACGAATGAATAAA
GTCTGTTTTATGTATGATTTATTGAGGAGCATTGGCCGAGTAGTCAACCG
TCGTCAGCTCCTCAAACCAGGGGTTCGCGGTTTGATTTGAATCCCATCTC
CTTCCAATGTTCCGTTCTGTTTTTAGATAACAGAGCCGGTTGGCCATGGG
CCCATTGAAAATAATCGAATGACTTTCTAAATGTCCTAATTACTGAGCTA
TCCACGTAAAATATTAACTATTGGATTAATAATCATTTTCCTGAAAAAAT
ATTTTTTATTCTTTAGGTTCCACAGGATTTTGCTTCTGTGTTGTACCAGA
AACTGGCAAAAAGATTTTGGGAACTGAAATTCGTGGAAAACCAAAATCAT
GCAGAGCTACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032858XLOC_032858Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051919-exon-scaffold_206-1575043694:201841..202010TCONS_00051919-exon-scaffold_206-1575043694:201841..202010Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1575043694:201379..201498TCONS_00051919-exon-scaffold_206-1575043694:201379..201498Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1575043694:200639..200731TCONS_00051919-exon-scaffold_206-1575043694:200639..200731Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1575043694:199978..200088TCONS_00051919-exon-scaffold_206-1575043694:199978..200088Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1575043694:198123..198152TCONS_00051919-exon-scaffold_206-1575043694:198123..198152Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1575043694:195936..196001TCONS_00051919-exon-scaffold_206-1575043694:195936..196001Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1575043694:195694..195816TCONS_00051919-exon-scaffold_206-1575043694:195694..195816Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1575043694:195199..195294TCONS_00051919-exon-scaffold_206-1575043694:195199..195294Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1510915933:201841..202010TCONS_00051919-exon-scaffold_206-1510915933:201841..202010Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1510915933:201379..201498TCONS_00051919-exon-scaffold_206-1510915933:201379..201498Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1510915933:200639..200731TCONS_00051919-exon-scaffold_206-1510915933:200639..200731Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1510915933:199978..200088TCONS_00051919-exon-scaffold_206-1510915933:199978..200088Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1510915933:198123..198152TCONS_00051919-exon-scaffold_206-1510915933:198123..198152Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1510915933:195936..196001TCONS_00051919-exon-scaffold_206-1510915933:195936..196001Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1510915933:195694..195816TCONS_00051919-exon-scaffold_206-1510915933:195694..195816Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1510915933:195199..195294TCONS_00051919-exon-scaffold_206-1510915933:195199..195294Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1491911889:201841..202010TCONS_00051919-exon-scaffold_206-1491911889:201841..202010Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1491911889:201379..201498TCONS_00051919-exon-scaffold_206-1491911889:201379..201498Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1491911889:200639..200731TCONS_00051919-exon-scaffold_206-1491911889:200639..200731Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1491911889:199978..200088TCONS_00051919-exon-scaffold_206-1491911889:199978..200088Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1491911889:198123..198152TCONS_00051919-exon-scaffold_206-1491911889:198123..198152Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1491911889:195936..196001TCONS_00051919-exon-scaffold_206-1491911889:195936..196001Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1491911889:195694..195816TCONS_00051919-exon-scaffold_206-1491911889:195694..195816Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1491911889:195199..195294TCONS_00051919-exon-scaffold_206-1491911889:195199..195294Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_206supercontigscaffold_206:195199..202010 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.8627e-06	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051919 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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