TCONS_00051913 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00051913
Unique Name	TCONS_00051913
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	569

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_206:140891..147007-

transcript sequence

>TCONS_00051913 ID=TCONS_00051913|Name=TCONS_00051913|organism=Clytia hemisphaerica|type=transcript|length=569bp
TATGCCGCCAATCGAGAAGGAAGCAAACATGGCGGGTCGAAGCGGTGATT
TTTCTGctgttatttttgttatgtCTATTGGAGTTATGACTAAAACAACG
TCTACAGCAAGTACTACATTGTTTAAAACATCTCAAATGCTTTTggatat
atttatttcaaccaatcaaatgatTTGTTTACGTTTTGACTAAGGAGACA
GTGAAATTATCATCGAAGAAAGATAGCCTGTCTTGTTGAGTAGCTAACAG
CACCTACTGATGGAAATCGCTCGAAATCGAAAAGatggacaatttttttc
aaattgggAACAATTTTCCTTGGTAGAGGATGCCTTGAGCTGGACAAACA
CTCAATCAGTTGGAACCATTCTGAACCATTTGGTACAACTCTGGGAGTTC
GAGAATACTAAAATCCCAGGGCTTTATACATGATCAAATTAGCAAGAGAA
CCAGAGAGAGCACATCAACTAAATATGATGAACGTTTAAACTTGCAGCTC
AGGTAACTTAGATGATTACCATATTAACTCAAAAAATGTGCATATATGTT
ATCTAATCAGGTTAGGTAA

Run BLAST on NCBI

transcript from alignment at scaffold_206:140891..147007-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00051913 ID=TCONS_00051913|Name=TCONS_00051913|organism=Clytia hemisphaerica|type=transcript|length=6117bp|location=Sequence derived from alignment at scaffold_206:140891..147007- (Clytia hemisphaerica)
TATGCCGCCAATCGAGAAGGAAGCAAACATGGCGGGTCGAAGCGGTGATT
TTTCTGCTGTTATTTTTGTTATGTCTATTGGAGTTATGACTAAAACAACG
TCTACAGCAAGTACTACATTGTTTAAAACATCTCAAATGCTTTTGGATAT
ATTTATTTCAACCAATCAAATGATTTGTTTACGTTTTGACTAAGGAGACA
GTGAAATTATCATCGAAGAAAGATAGCCTGTCTTGTTGAGTAGCTAACAG
CACCTACTGATGGAAATCGCTCGAAATCGAAAAGATGGACAATTTTTTTC
AAATTGGGAACAATTTTCCTTGGTAGAGGATGCCTTGAGGTATGTATATC
TGAAGTTTCTAGTGTGGTCTGGCTCTTTTAGGACCCTCCCGGCGCTCCGG
AAACCTCCGGTGCAAAAAGTGCCGTTTTTTTCGTGCACCGGAACACCGGA
ACGTTCCAGTGCACTTCTGGTGCTTCCGGTGCAAGATTTTTCCGAATCCA
GCTGCACCGGAACGTTACGGTGCTTCCGGTGCATGATTTCCGCGATATAA
ATGCGATAGCGTTCCCTGCGCTAATCATTTAAAAAGTAACTACGGCACGC
GCGAATTATCCAAATTCTTAAACCAAAATACATAGCAGATTTTTTTTAGA
AGAGAAATCAGATTCTTGGTGATAAATGTGATAAATTGGATTAATTATAT
GGTTGATTACATTTAGCTTAGATTTGTAAAGGACGAGCGGGGCGATCAAT
TCGTAATAGCCCCGCTTTTTTGTAATCGCCCTGATGTAAACAAACTCTAA
ACCATGTTATTACTAGTACAAATTAAATGACAGTCACAGAAATTCTTGCA
TTTGCACGGGGTCCGCTACGTTGCATTTGCAACGGGTCGAAATCGAAAGT
AGCGCAAAAACCCGGTGCAAATACACTGGGTTTTTGGAACTCTGTGCATT
TGCACGGGGTCCGCTACGTTGCATTTGCAACGGGTCGAAATCGAAAGTAG
CGCAAAAACCCGGTGCAAATACACTGGGTTTTTGGAACTCTGTGCATTTG
CACGGGGTGGAAAATTAGAAAATTTGAGATTTTGCAATGGTTTTACAATC
AATTAACATCATTCTTTTTGTTTAGAATCAGTATTAAGAAGATGAATCAA
ATTCAATAAGATATACCAGGTAATCCTTCTTTATTGTCTTTATATTTTGA
TTTGGAAAGTAAGAATTGTTAAGGCTGTGGCGAAAGAGTTTATCCGCACG
GTCATACTTTCGATTTTCAAATACGGAACATACGAAACTTAGAATACGGG
CATTGTGAGATAACGGTGTTTAATAATCCCGATCCTGCCACTCCATACTT
ATTTTTAATTCTCCAGCGGTCAAGATTGGATGAATTACTTCTTCTCTTGT
TGTTTCTTCTTCTTCTTTTTCATTTCAGTTTTCATTTTTATGGGAACGCA
ATTGCGATCATCATATCCAGGTGAGACGTGTATTTTCCACATTTTCCAAC
GTCGTAATATCATAATGACACACATCCATTGGCGAGGGCGAGAATATGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCGTCTGTCCGGTGGAAAAAATAACCTGAAATTTTAAACCACTT
TAAAAGAACCGAATGACTTTACCCTCAGTGTGGTGGAAAGATTGCACTGC
AACCATTCTCTCTATAAACTTAGAGCTGGAATATATATTGTCTATCCCAA
TCGGGACACTACGATTAGATAAAAATTTTCATCCACACTGAAGGAAAAAG
CTCCACCGGGGCGGCACTGAAACAGTGGTGTATGTGCGCGAGAGAATGAA
AACAACGCCCAGAAAGAAAATAAAGACCAACGAAGTTACAGTCTATATTC
TATTAATTTGATTGTAATGATCAATGGCCTCATTTTTATTTTTGGCCACT
TTTTTTAATGTTGTATGTATTTCGTAACGTATATTATTTTATAAATTGTT
AATTTTAAAATAAAAAAGGTGCGTCCTTATTTTCTTCTTCACAACTCTCG
AGCAACACGCTCTCCCTGAACAGCCCATAATGGTAACAATCGGTAACATT
GGTGGCGGCACTCTAAATAAAGAATGAAAATTAAAGTTATGACTATGATC
CGTGGTACGGTAGATTTTTTTAAGCTTGAAACTAGACAAAGTGACCGTCG
CTCAAGTCTGTGGATAAACTGCCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNAACGCACACTAATTGATGGGAAGCACAAAAATTGATCTA
GATTTCAACATAGATCTAGATGAGATAATTGTTTCATACATACAACAATG
TAACTTACGCTGTCTAATGCTCTCAGACACATCTTGAGTTTTTAGTGAAA
GCACCGTAATGATTGTGATATTGACAAATCGTCTCTGCTTCGGTTGATCC
ATTTTTCCTGAATAAAAAGAAAGTAAAAACATTATTTGAACTTGAACTTA
TTATTTACTTTAAAGGTATACTAATTTAAATATAAGATCATATAAAGATC
AGATGCGTACTTCTTTGTTCTTTATTTATCGACGATGTTCCCAACTGCCC
ATGTGTGATGCACGTGATAATTTTTTATAATTGAGCAAAGTCTGCCATAT
CGTATTATTCCCGACTAACTCTATCGCTGGATAGCCCTGTATCTGACNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNAAAAGTGTAGAGTTGTTTGTACGAAGTTTGAATCAGCATTGAAAGGCA
CCCAGAGGCACCCAAGCTGAAAGTAGGAAAAAAGAGAAAGTTAGGCATAA
ATCAATACAGTGTGTTATAAAACAACAACAACATCTGAACATCAGATATT
GATACCAGTGGTTTCGCAGATTGTGTTGATGGAGAGAAAATTTCAGAAAA
GAGACCGTGGCTTTGTCTAATTATTGATGCTGAAGACTTTATATTTGTTA
TTGATTGGTTTTATTGAATTGGGTGAAATAAATGAGGAAATCAANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTTCATTTGAGGGCTATGCATGTTAGCCTCCACTG
ATGCAAGTTACCCAATCTCACGGTATTTATTTCATTTGTGAGGACAAAAC
AATTTTGAAAACTCTCATGAAAATAGTAGCAACAAAAATTTTGTAAGTCA
ATGGTTTGTCTATTATTTCCGGAGGAAATACCTTTAAATGATATTAATGA
TGATTTGTTTGAAATATTTATCACTACCAGGTGTTGAAATTCAAAAAAAA
TGATTGAAATTATACGGTTTAATTCCTTTCCTTTTAGCTGGACAAACACT
CAATCAGTTGGAACCATTCTGAACCATTTGGTACAACTCTGGGAGTTCGA
GAATACTAAAATCCCAGGGCTTTATACATGATCAAATTAGCAAGAGAACC
AGAGAGAGCACATCAACTAAATATGATGAACGTTTAAACTTGCAGCTCAG
GTAACTTAGATGATTACCATATTAACTCAAAAAATGTGCATATATGTTAT
CTAATCAGGTTAGGTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_032855	XLOC_032855	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00051913-exon-scaffold_206-1575043694:146669..147007	TCONS_00051913-exon-scaffold_206-1575043694:146669..147007	Clytia hemisphaerica	exon
TCONS_00051913-exon-scaffold_206-1575043694:140891..141120	TCONS_00051913-exon-scaffold_206-1575043694:140891..141120	Clytia hemisphaerica	exon
TCONS_00051913-exon-scaffold_206-1510915933:146669..147007	TCONS_00051913-exon-scaffold_206-1510915933:146669..147007	Clytia hemisphaerica	exon
TCONS_00051913-exon-scaffold_206-1510915933:140891..141120	TCONS_00051913-exon-scaffold_206-1510915933:140891..141120	Clytia hemisphaerica	exon
TCONS_00051913-exon-scaffold_206-1491911889:146669..147007	TCONS_00051913-exon-scaffold_206-1491911889:146669..147007	Clytia hemisphaerica	exon
TCONS_00051913-exon-scaffold_206-1491911889:140891..141120	TCONS_00051913-exon-scaffold_206-1491911889:140891..141120	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_206	supercontig	scaffold_206:140891..147007 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.553653	0.163776	0.0376146	0.336867	1.29407	1.6803	1.26701	1.97721	1.84374	3.28269	1.13759	1.5957	2.58775	1.09087	1.34703	2.54207	1.63883	2.26848	2.8048	2.39702	2.38383	1.64043	0.626721	2.11803	0.374022	0.792528	3.64453	4.06433	0.841001	3.02674

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00051913 vs. Swiss-Prot (Human)

BLAST of TCONS_00051913 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00051913 (transcript) - C. hemisphaerica