TCONS_00051889 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051889
Unique NameTCONS_00051889
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length739

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051889 ID=TCONS_00051889|Name=TCONS_00051889|organism=Clytia hemisphaerica|type=transcript|length=739bp
ATTGTCTTTTGATATCATTTAATCTTATTAAactcaaatattttcttgtg
taaattaatgacaaaaaaaaagaaatccccATAAAACCAAAACACAAATC
TGAAAACCAAAACTAAACTtttagaaatacttttttgcgAAATTTCAAAC
CTAACAATATAGTAAAAACAAAATACTCACTGATTGTAGTAAGTCTGAct
gattaggaccattggtgaAATTGTTacttttgttgttgttattgttgttt
gttgttaaTTGTTGCTGTTGCTGATCAGCGTTTGCTGTTGAAGTGTTTGt
attattcattttatttgatGCACCACTGTATtgtttactttttgaagaag
tCTTATTTGTAGCAGTGGGCTGTGTGGTCTTCAAAAACTGGCTAGCATGG
TTCAATTCTTGATTCTCTCGCTCACGCATGTAAGGTATTTGCTCCAAAAA
TCGTCTGTGAGTATCTTCTTGCCTTTCTTTTAGCATCATAAACCTTTGCT
CTAAATGCTTGACTATCACCTTGTTTCCATCACTGTTATCCATTATCTAG
CAACATAGAGAAAAATGTTAAAGCTTCTATTGAAAAAATCCTTCTCTTGT
TTATATTCTAGATCTTCTGCATCATTTAATTTTGTTCATACATAACAAAG
TTCCACCATcttgaactttttttataatcGTTCAATCATGCCTTTCGCCG
ACcgattgtttgatttttgacAGTCGAGCAGAGTTTCAG
Run BLAST on NCBI

protein sequence of TCONS_00051889-protein

>TCONS_00051889-protein ID=TCONS_00051889-protein|Name=TCONS_00051889-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
MDNSDGNKVIVKHLEQRFMMLKERQEDTHRRFLEQIPYMRERENQELNHA
SQFLKTTQPTATNKTSSKSKQYSGASNKMNNTNTSTANADQQQQQLTTNN
NNNNKSNNFTNGPNQSDLLQSVSILFLLYC
Run BLAST on NCBI

transcript from alignment at scaffold_205:366738..367476

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051889 ID=TCONS_00051889|Name=TCONS_00051889|organism=Clytia hemisphaerica|type=transcript|length=739bp|location=Sequence derived from alignment at scaffold_205:366738..367476 (Clytia hemisphaerica)
CTGAAACTCTGCTCGACTgtcaaaaatcaaacaatcgGTCGGCGAAAGGC
ATGATTGAACgattataaaaaaagttcaagATGGTGGAACTTTGTTATGT
ATGAACAAAATTAAATGATGCAGAAGATCTAGAATATAAACAAGAGAAGG
ATTTTTTCAATAGAAGCTTTAACATTTTTCTCTATGTTGCTAGATAATGG
ATAACAGTGATGGAAACAAGGTGATAGTCAAGCATTTAGAGCAAAGGTTT
ATGATGCTAAAAGAAAGGCAAGAAGATACTCACAGACGATTTTTGGAGCA
AATACCTTACATGCGTGAGCGAGAGAATCAAGAATTGAACCATGCTAGCC
AGTTTTTGAAGACCACACAGCCCACTGCTACAAATAAGacttcttcaaaa
agtaaacaATACAGTGGTGCatcaaataaaatgaataataCAAACACTTC
AACAGCAAACGCTGATCAGCAACAGCAACAAttaacaacaaacaacaata
acaacaacaaaagtAACAATTtcaccaatggtcctaatcagTCAGACTTA
CTACAATCAGTGAGTATTTTGTTTTTACTATATTGTTAGGTTTGAAATTT
cgcaaaaaagtatttctaaaAGTTTAGTTTTGGTTTTCAGATTTGTGTTT
TGGTTTTATggggatttctttttttttgtcattaatttacacaagaaaat
atttgagtTTAATAAGATTAAATGATATCAAAAGACAAT

Coding sequence (CDS) from alignment at scaffold_205:366738..367476

>TCONS_00051889 ID=TCONS_00051889|Name=TCONS_00051889|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at scaffold_205:366738..367476 (Clytia hemisphaerica)
ATGGATAACAGTGATGGAAACAAGGTGATAGTCAAGCATTTAGAGCAAAG
GTTTATGATGCTAAAAGAAAGGCAAGAAGATACTCACAGACGATTTTTGG
AGCAAATACCTTACATGCGTGAGCGAGAGAATCAAGAATTGAACCATGCT
AGCCAGTTTTTGAAGACCACACAGCCCACTGCTACAAATAAGacttcttc
aaaaagtaaacaATACAGTGGTGCatcaaataaaatgaataataCAAACA
CTTCAACAGCAAACGCTGATCAGCAACAGCAACAAttaacaacaaacaac
aataacaacaacaaaagtAACAATTtcaccaatggtcctaatcagTCAGA
CTTACTACAATCAGTGAGTATTTTGTTTTTACTATATTGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032841XLOC_032841Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051889-proteinTCONS_00051889-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051889-exon-scaffold_205-1491911889:366738..367476TCONS_00051889-exon-scaffold_205-1491911889:366738..367476Clytia hemisphaericaexon
TCONS_00051889-exon-scaffold_205-1510915933:366738..367476TCONS_00051889-exon-scaffold_205-1510915933:366738..367476Clytia hemisphaericaexon
TCONS_00051889-exon-scaffold_205-1575043694:366738..367476TCONS_00051889-exon-scaffold_205-1575043694:366738..367476Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_205supercontigscaffold_205:366738..367476 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.89064	5.41792	18.4174	26.4718	23.9219	17.6907	15.7491	14.583	5.86647	12.2973	6.98529	9.09454	8.23604	10.9573	7.45001	8.68845	8.79392	11.7433	7.32925	7.07384	8.47839	9.18641	10.8987	13.8858	9.98987	10.6476	12.2994	16.8487	17.0141	21.7251
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051889 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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