TCONS_00051884 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051884
Unique NameTCONS_00051884
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length795

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051884 ID=TCONS_00051884|Name=TCONS_00051884|organism=Clytia hemisphaerica|type=transcript|length=795bp
attttggtgttttgctACCCTATTTGGTAATCATGGCGGAAAATTTAGGG
TCATAGAATTTATTCATAGATATAAAGTTATTTACATGttcttctttaaa
aatgttgacgtaatatttatttttctaaaactttaagAGGGTGCTCTGCC
CTTGATCTGACAGGTTAATATTGTCAGATGTCAATGTCTTGCAAAACGTA
ATCATTTACCCAGATGCTTAAAACACTTTTCCGCTAAAGATTCAACAGGC
TTGTAACTCTATACAAAAACGTCGGTTTCAGGTCTCAAATTACAATTTTC
ccattttaaaagttatcaaaCATTCAAGCTAAGAGGTAATCCATGCGGCT
TTCAATGAATGTGGTTGCCACTCAAAACATTAGGGCGGTCATATATATAA
GTTGACTGGAGCAGACTTGCAAGTTGAATCACGTAATgcatttttagaaa
tcaatggaATCAGTGTACAATAAAAGTTCTGTCATGAAACTCCCCAGATT
TTTTTCAAGGCTTTTCTCAAAtgctttccaacttttaattttcgtttttt
gattCTACAATTGTTTTCACATCGACCTTTCATTTGTCGACATAGCTTGA
AACCGTTCTTGACTAAGTCTTCTATTTGTGTACATTTATTGAAAAGGGTA
GTGCACTTCTTCCAACACTCGTGTATCCTCCAGTGACCAGCCCGCTTGAC
GTGAAATCTGGACACTTTGGAGCACACATTCAATTTTAACATAACCACCA
ACAGTAAAATAACAATTACCTTTAATCGCATTTTTTATACTTCTA
Run BLAST on NCBI

protein sequence of TCONS_00051884-protein

>TCONS_00051884-protein ID=TCONS_00051884-protein|Name=TCONS_00051884-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MRLKVIVILLLVVMLKLNVCSKVSRFHVKRAGHWRIHECWKKCTTLFNKC
TQIEDLVKNGFKLCRQMKGRCENNCRIKKRKLKVGKHLRKALKKIWGVS
Run BLAST on NCBI

transcript from alignment at scaffold_205:286685..287479

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051884 ID=TCONS_00051884|Name=TCONS_00051884|organism=Clytia hemisphaerica|type=transcript|length=795bp|location=Sequence derived from alignment at scaffold_205:286685..287479 (Clytia hemisphaerica)
TAGAAGTATAAAAAATGCGATTAAAGGTAATTGTTATTTTACTGTTGGTG
GTTATGTTAAAATTGAATGTGTGCTCCAAAGTGTCCAGATTTCACGTCAA
GCGGGCTGGTCACTGGAGGATACACGAGTGTTGGAAGAAGTGCACTACCC
TTTTCAATAAATGTACACAAATAGAAGACTTAGTCAAGAACGGTTTCAAG
CTATGTCGACAAATGAAAGGTCGATGTGAAAACAATTGTAGaatcaaaaa
acgaaaattaaaagttggaaagcaTTTGAGAAAAGCCTTGAAAAAAATCT
GGGGAGTTTCATGACAGAACTTTTATTGTACACTGATtccattgatttct
aaaaatgcATTACGTGATTCAACTTGCAAGTCTGCTCCAGTCAACTTATA
TATATGACCGCCCTAATGTTTTGAGTGGCAACCACATTCATTGAAAGCCG
CATGGATTACCTCTTAGCTTGAATGtttgataacttttaaaatggGAAAA
TTGTAATTTGAGACCTGAAACCGACGTTTTTGTATAGAGTTACAAGCCTG
TTGAATCTTTAGCGGAAAAGTGTTTTAAGCATCTGGGTAAATGATTACGT
TTTGCAAGACATTGACATCTGACAATATTAACCTGTCAGATCAAGGGCAG
AGCACCCTcttaaagttttagaaaaataaatattacgtcaacatttttaa
agaagaaCATGTAAATAACTTTATATCTATGAATAAATTCTATGACCCTA
AATTTTCCGCCATGATTACCAAATAGGGTagcaaaacaccaaaat

Coding sequence (CDS) from alignment at scaffold_205:286685..287479

>TCONS_00051884 ID=TCONS_00051884|Name=TCONS_00051884|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at scaffold_205:286685..287479 (Clytia hemisphaerica)
ATGCGATTAAAGGTAATTGTTATTTTACTGTTGGTGGTTATGTTAAAATT
GAATGTGTGCTCCAAAGTGTCCAGATTTCACGTCAAGCGGGCTGGTCACT
GGAGGATACACGAGTGTTGGAAGAAGTGCACTACCCTTTTCAATAAATGT
ACACAAATAGAAGACTTAGTCAAGAACGGTTTCAAGCTATGTCGACAAAT
GAAAGGTCGATGTGAAAACAATTGTAGaatcaaaaaacgaaaattaaaag
ttggaaagcaTTTGAGAAAAGCCTTGAAAAAAATCTGGGGAGTTTCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032836XLOC_032836Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051884-proteinTCONS_00051884-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051884-exon-scaffold_205-1491911889:286685..287479TCONS_00051884-exon-scaffold_205-1491911889:286685..287479Clytia hemisphaericaexon
TCONS_00051884-exon-scaffold_205-1510915933:286685..287479TCONS_00051884-exon-scaffold_205-1510915933:286685..287479Clytia hemisphaericaexon
TCONS_00051884-exon-scaffold_205-1575043694:286685..287479TCONS_00051884-exon-scaffold_205-1575043694:286685..287479Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_205supercontigscaffold_205:286685..287479 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.32561	7.32074	3.42745	3.0179	0.489867	0.322583	1.63457	1.23878	1.07137	2.52775	7.60584	3.3063	0.523441	0.292707	1.13447	1.69707	0	0.0465836	0.193073	0.0673457	0.117071	0	8.05232	7.76249	0	0	0.581108	0.531578	2.21751	2.6016
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051884 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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