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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051827 ID=TCONS_00051827|Name=TCONS_00051827|organism=Clytia hemisphaerica|type=transcript|length=1963bpRun BLAST on NCBI protein sequence of TCONS_00051827-protein >TCONS_00051827-protein ID=TCONS_00051827-protein|Name=TCONS_00051827-protein|organism=Clytia hemisphaerica|type=polypeptide|length=523bp MADEKSSSLLKRFHTKKTSSKPPKPNKNKPGNGPSPKPLPEAEGPENEALRun BLAST on NCBI transcript from alignment at scaffold_205:312591..319125+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051827 ID=TCONS_00051827|Name=TCONS_00051827|organism=Clytia hemisphaerica|type=transcript|length=6535bp|location=Sequence derived from alignment at scaffold_205:312591..319125+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_205:312591..319125+ >TCONS_00051827 ID=TCONS_00051827|Name=TCONS_00051827|organism=Clytia hemisphaerica|type=CDS|length=18828bp|location=Sequence derived from alignment at scaffold_205:312591..319125+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051827 vs. Swiss-Prot (Human)
Match: DIAP2 (Protein diaphanous homolog 2 OS=Homo sapiens GN=DIAPH2 PE=1 SV=1) HSP 1 Score: 302.368 bits (773), Expect = 5.027e-89 Identity = 165/385 (42.86%), Postives = 245/385 (63.64%), Query Frame = 2
Query: 599 FEKMLDEMNLAEHLKKPIRQRDQQTKIGMLQQFMRREHSNKVASG---------PESPNDFLRKLGRNEFEPGELIQILQALRVNLTGKPLSWIKDFGSEGLESILNHLRFFICSSSHH--DQRVHHECVKCLKAFMNNKFGLSLMLKNIQGLTLLAQSIRADNPGMMQDVVKIMAAVSLVSHE----KALEAMTMKGEAENKARFSAVITALKGDNYPATLKVACLQMINALVATPDDLDFRLHLRNEIIREGFSDALPGLREMDQDDLNVQLDIFDEHKDDDAVEFQHRYNDIQLHMDDMQELFSVLNTVVEDTPSHGYFLSILQHLLLIRDDVFARPQYFRLIEECVSQIVLQKQGVDPDFAA-QKLSIDVDTLVEGQIDNA 1705
FEKM+++MNL E K P+R +D TK M+ Q++ S SG S +++ +L R+ +L+ L++LRV+LT P+SW+ +FG EGL +L+ L + D++ ++ ++CLKAFMNNKFGL +L + + L LLA++I P MM ++VKI++A+ +V E K L A+T E N+ RFS ++ L+ L+VAC+Q INALV +P +LDFR+HLRNE +R G LP L+E + D+L++QL +FDE+K+DD E HR NDI+ MDDM E++ +L +++DT + YFLSILQH LLIR+D + RPQY+++IEECVSQIVL G+DPDF Q+L ID+ L++ ++ A
Sbjct: 110 FEKMMEDMNLNEEKKAPLRNKDFTTKREMVVQYI----SATAKSGGLKNSKHECTLSSQEYVHEL-RSGISDEKLLNCLESLRVSLTSNPVSWVNNFGHEGLGLLLDELEKLLDKKQQENIDKKNQYKLIQCLKAFMNNKFGLQRILGDERSLLLLARAIDPKQPNMMTEIVKILSAICIVGEENILDKLLGAITTAAERNNRERFSPIVEGLENQE-ALQLQVACMQFINALVTSPYELDFRIHLRNEFLRSGLKTMLPDLKEKENDELDIQLKVFDENKEDDLTELSHRLNDIRAEMDDMNEVYHLLYNMLKDTAAENYFLSILQHFLLIRNDYYIRPQYYKIIEECVSQIVLHCSGMDPDFKYRQRLDIDLTHLIDSCVNKA 488 The following BLAST results are available for this feature:
BLAST of TCONS_00051827 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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