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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051823 ID=TCONS_00051823|Name=TCONS_00051823|organism=Clytia hemisphaerica|type=transcript|length=3762bpRun BLAST on NCBI transcript from alignment at scaffold_205:280936..299054+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051823 ID=TCONS_00051823|Name=TCONS_00051823|organism=Clytia hemisphaerica|type=transcript|length=18119bp|location=Sequence derived from alignment at scaffold_205:280936..299054+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00051823 vs. Swiss-Prot (Human)
Match: GGT1 (Glutathione hydrolase 1 proenzyme OS=Homo sapiens GN=GGT1 PE=1 SV=2) HSP 1 Score: 214.542 bits (545), Expect = 1.210e-58 Identity = 126/293 (43.00%), Postives = 174/293 (59.39%), Query Frame = 1
Query: 994 GNLSTIFLEDVNAKGGNMTAEDLKNYTV-LEKTPIKIKLTDQLTLHTSPLPGGGSVLSHILNMVKGMQLSPSDEEQISNKVLMYHKIVESFKFSYAMRPHLGDPNLVPDSEKDNFMKYSRDILSDINATNHRDKINLTSTQPNSYYDPYFVTTEDQGTTHVSVLDKDGNAVSATDTINYAFGAKFRSMKSGIIYNNELADYFTNSSYTKNEKNEVVDYPKPMVNAPLAGRRPLSSTCPSVITDQDNNVKMVVGGSGGTRITLSTAWVIIKKLWLNYTLSDAILDARPQHAFYP 1869
G+L+ ++D+ A GG +TAEDL NY L + P+ I L D + L+ P G VL+ ILN++KG S E K L YH+IVE+F+F+YA R LGDP V +E R++ S+ A R +I+ +T P SYY P F T +D GT H+SV+ +DG+AVSAT TIN FG+K RS SGI++NNE+ D F++ S T NE P P N G++PLSS CP+++ QD V+MVVG +GGT+IT +TA II LW Y + A+ + R + P
Sbjct: 231 GSLTAQIVKDIQAAGGIVTAEDLNNYRAELIEHPLNISLGD-VVLYMPSAPLSGPVLALILNILKGYNFSRESVESPEQKGLTYHRIVEAFRFAYAKRTLLGDPKFVDVTE------VVRNMTSEFFAAQLRAQISDDTTHPISYYKPEFYTPDDGGTAHLSVVAEDGSAVSATSTINLYFGSKVRSPVSGILFNNEMDD-FSSPSIT----NEFGVPPSP-ANFIQPGKQPLSSMCPTIMVGQDGQVRMVVGAAGGTQITTATALAIIYNLWFGYDVKRAVEEPRLHNQLLP 510 HSP 2 Score: 142.51 bits (358), Expect = 4.966e-35 Identity = 87/234 (37.18%), Postives = 141/234 (60.26%), Query Frame = 3
Query: 315 QTNDAFFKYGAVATDAKQCSEIGRDMLKKGGHAVDGAIAALICTGVVNSHSTGIAGGGFMIIYDKSKNESIMLDYRETGPASLTTTSFDGNTDXXXXXXXXXXXXXELRGLKKAHEKYGKLTWAELIQPSIDLAEEGTVIGKHMGKYLKSSSSTGAKVKADPGLSELFIDADGNFKSIGSMVKNVKYAESLRQIQAD-YDALNAGNLSRIFLEDVNAKGGNMTAEDXW*LINNF 1013
+ ++ + AVA DAKQCS+IGRD L+ GG AVD AIAAL+C G++N+HS GI GG F+ IY+ + ++ +++ RE P T F+ +++ ++ GG +V VPGE+RG + AH+++G+L WA L QPSI LA +G +GK + L++ + ++ P L E+F D G + + A++ + + A G+L+ ++D+ A GG +TAED +NN+
Sbjct: 32 EPDNHVYTRAAVAADAKQCSKIGRDALRDGGSAVDAAIAALLCVGLMNAHSMGIGGGLFLTIYNSTTRKAEVINAREVAPRLAFATMFN-SSEQSQKGGLSVAVPGEIRGYELAHQRHGRLPWARLFQPSIQLARQGFPVGKGLAAALENKRTV---IEQQPVLCEVFCR-DRKVLREGERLTLPQLADTYETLAIEGAQAFYNGSLTAQIVKDIQAAGGIVTAED----LNNY 256 The following BLAST results are available for this feature:
BLAST of TCONS_00051823 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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