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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051758 ID=TCONS_00051758|Name=TCONS_00051758|organism=Clytia hemisphaerica|type=transcript|length=1174bp
CGATCATTGAAAAGTCTTCATGATTCATCTATCAAGCTGACCGATAGCCA
AATTGCAATGTACTGGATAAGCAATCACGAcaaacctttgaaaaagtggG
TTCGAAGTCGCGTCTTAGAAATCCTTCGTTTCTCGGACAAGAAAGATTGG
TACTACGTCCCAACAGATCAAAACCTTGCAGACCTTGGCACCAGAAGAGG
AGCCACATTCCAGGATATCGACCAATCATCTAATTGGATCAATGGACATC
AGTGGATGAAGCAATCACAGTCATCATTTCCCATCCAATCAGCATCTGAA
GTTACGATCTCCAACAAACAGATGGTTGAAATCAACAAAGAACATACTAT
CGTTCAAAGTTATCACATCTTATCATTCAAAGAAACATCTGAAAGGTATA
AATTCTCTCAATGCCTTCTGAACCCAAATCAACACAAGTTTTCTACAGTT
ATTCGTATCATGGCAATCGTCTTCAAGTATATTTACACTCTACTCAAACG
TACAAAAGATAAATCTCGTTCACAACTCACCATGATGAAACATTCAACCA
TTCTCATTAACGATGACGAGATCAAAACTGCCGAGACGTATTTCTACAGG
AAAGCATCACAAGAGATAATTCAATTccttccaaaatcaaaatatgaaaa
tatcacCAGACTCAACAACAATGGAATTTTGGTGTACACTGGTCGAATCC
TCGCCGATGATCAAGTATCCATAGTTGGACGTTTCACCAAATCAATGAAA
GATTTATCTTCAACATCCTTTTGCGTACCAGTTATAGACAGAAGATCACC
AATTGCATATAGTATCATCCTCGACACACATTGGAATCATCCAGAAGTCA
GTCATGCTGGGATAGAGTCCACACTTCGCTATGTCCTCAAGAAAGTTTAC
ATCCTTGAAGGTCGAATTCTTATCAAATCCATCAAAAGTTCGTGTCAACG
TTGCAAGTTTTTGGCCAAACGAACCATCGACATGGCTATGGGTCCAATCT
CCAGATGCAATATCACCATAGCTCCAGCATTCTTCTACACCCAAGTCGAC
CTATCTGGACCGTTTCAATGCTACACACCACACCACAAACGAAAGACAGT
TAAAATATGGTTGGCTGTCTTCTGCTGCTGCTCTACATCAGCTGTCAAAA
TCAAGGTTTTGGACGATTATGGAA Run BLAST on NCBI protein sequence of TCONS_00051758-protein >TCONS_00051758-protein ID=TCONS_00051758-protein|Name=TCONS_00051758-protein|organism=Clytia hemisphaerica|type=polypeptide|length=391bp
RSLKSLHDSSIKLTDSQIAMYWISNHDKPLKKWVRSRVLEILRFSDKKDW
YYVPTDQNLADLGTRRGATFQDIDQSSNWINGHQWMKQSQSSFPIQSASE
VTISNKQMVEINKEHTIVQSYHILSFKETSERYKFSQCLLNPNQHKFSTV
IRIMAIVFKYIYTLLKRTKDKSRSQLTMMKHSTILINDDEIKTAETYFYR
KASQEIIQFLPKSKYENITRLNNNGILVYTGRILADDQVSIVGRFTKSMK
DLSSTSFCVPVIDRRSPIAYSIILDTHWNHPEVSHAGIESTLRYVLKKVY
ILEGRILIKSIKSSCQRCKFLAKRTIDMAMGPISRCNITIAPAFFYTQVD
LSGPFQCYTPHHKRKTVKIWLAVFCCCSTSAVKIKVLDDYG Run BLAST on NCBI transcript from alignment at scaffold_204:108278..109539- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051758 ID=TCONS_00051758|Name=TCONS_00051758|organism=Clytia hemisphaerica|type=transcript|length=1262bp|location=Sequence derived from alignment at scaffold_204:108278..109539- (Clytia hemisphaerica)
CGATCATTGAAAAGTCTTCATGATTCATCTATCAAGCTGACCGATAGCCA
AATTGCAATGTACTGGATAAGCAATCACGACAAACCTTTGAAAAAGTGGG
TTCGAAGTCGCGTCTTAGAAATCCTTCGTTTCTCGGACAAGAAAGATTGG
TACTACGTCCCAACAGATCAAAACCTTGCAGACCTTGGCACCAGAAGAGG
AGCCACATTCCAGGATATCGACCAATCATCTAATTGGATCAATGGACATC
AGTGGATGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTCAATGGACATCAGTGGATGAAGC
AATCACAGTCATCATTTCCCATCCAATCAGCATCTGAAGTTACGATCTCC
AACAAACAGATGGTTGAAATCAACAAAGAACATACTATCGTTCAAAGTTA
TCACATCTTATCATTCAAAGAAACATCTGAAAGGTATAAATTCTCTCAAT
GCCTTCTGAACCCAAATCAACACAAGTTTTCTACAGTTATTCGTATCATG
GCAATCGTCTTCAAGTATATTTACACTCTACTCAAACGTACAAAAGATAA
ATCTCGTTCACAACTCACCATGATGAAACATTCAACCATTCTCATTAACG
ATGACGAGATCAAAACTGCCGAGACGTATTTCTACAGGAAAGCATCACAA
GAGATAATTCAATTCCTTCCAAAATCAAAATATGAAAATATCACCAGACT
CAACAACAATGGAATTTTGGTGTACACTGGTCGAATCCTCGCCGATGATC
AAGTATCCATAGTTGGACGTTTCACCAAATCAATGAAAGATTTATCTTCA
ACATCCTTTTGCGTACCAGTTATAGACAGAAGATCACCAATTGCATATAG
TATCATCCTCGACACACATTGGAATCATCCAGAAGTCAGTCATGCTGGGA
TAGAGTCCACACTTCGCTATGTCCTCAAGAAAGTTTACATCCTTGAAGGT
CGAATTCTTATCAAATCCATCAAAAGTTCGTGTCAACGTTGCAAGTTTTT
GGCCAAACGAACCATCGACATGGCTATGGGTCCAATCTCCAGATGCAATA
TCACCATAGCTCCAGCATTCTTCTACACCCAAGTCGACCTATCTGGACCG
TTTCAATGCTACACACCACACCACAAACGAAAGACAGTTAAAATATGGTT
GGCTGTCTTCTGCTGCTGCTCTACATCAGCTGTCAAAATCAAGGTTTTGG
ACGATTATGGAA Coding sequence (CDS) from alignment at scaffold_204:108278..109539- >TCONS_00051758 ID=TCONS_00051758|Name=TCONS_00051758|organism=Clytia hemisphaerica|type=CDS|length=2346bp|location=Sequence derived from alignment at scaffold_204:108278..109539- (Clytia hemisphaerica)
ATCAGTGGATGAAGCAATCACAGTCATCATTTCCCATCCAATCAGCATCT
GAAGTTACGATCTCCAACAAACAGATGGTTGAAATCAACAAAGAACATAC
TATCGTTCAAAGTTATCACATCTTATCATTCAAAGAAACATCTGAAAGGT
ATAAATTCTCTCAATGCCTTCTGAACCCAAATCAACACAAGTTTTCTACA
GTTATTCGTATCATGGCAATCGTCTTCAAGTATATTTACACTCTACTCAA
ACGTACAAAAGATAAATCTCGTTCACAACTCACCATGATGAAACATTCAA
CCATTCTCATTAACGATGACGAGATCAAAACTGCCGAGACGTATTTCTAC
AGGAAAGCATCACAAGAGATAATTCAATTCCTTCCAAAATCAAAATATGA
AAATATCACCAGACTCAACAACAATGGAATTTTGGTGTACACTGGTCGAA
TCCTCGCCGATGATCAAGTATCCATAGTTGGACGTTTCACCAAATCAATG
AAAGATTTATCTTCAACATCCTTTTGCGTACCAGTTATAGACAGAAGATC
ACCAATTGCATATAGTATCATCCTCGACACACATTGGAATCATCCAGAAG
TCAGTCATGCTGGGATAGAGTCCACACTTCGCTATGTCCTCAAGAAAGTT
TACATCCTTGAAGGTCGAATTCTTATCAAATCCATCAAAAGTTCGTGTCA
ACGTTGCAAGTTTTTGGCCAAACGAACCATCGACATGGCTATGGGTCCAA
TCTCCAGATGCAATATCACCATAGCTCCAGCATTCTTCTACACCCAAGTC
GACCTATCTGGACCGTTTCAATGCTACACACCACACCACAAACGAAAGAC
AGTTAAAATATGGTTGGCTGTCTTCTGCTGCTGCTCTACATCAGCTGTCA
AAATCAAGGTTTTGGACGATTATGGACGATCATTGAAAAGTCTTCATGAT
TCATCTATCAAGCTGACCGATAGCCAAATTGCAATGTACTGGATAAGCAA
TCACGACAAACCTTTGAAAAAGTGGGTTCGAAGTCGCGTCTTAGAAATCC
TTCGTTTCTCGGACAAGAAAGATTGGTACTACGTCCCAACAGATCAAAAC
CTTGCAGACCTTGGCACCAGAAGAGGAGCCACATTCCAGGATATCGACCA
ATCATCTAATTGGATCAATGGACATCAGTGGATGAAGCAATCACAGTCAT
CATTTCCCATCCAATCAGCATCTGAAGTTACGATCTCCAACAAACAGATG
GTTGAAATCAACAAAGAACATACTATCGTTCAAAGTTATCACATCTTATC
ATTCAAAGAAACATCTGAAAGGTATAAATTCTCTCAATGCCTTCTGAACC
CAAATCAACACAAGTTTTCTACAGTTATTCGTATCATGGCAATCGTCTTC
AAGTATATTTACACTCTACTCAAACGTACAAAAGATAAATCTCGTTCACA
ACTCACCATGATGAAACATTCAACCATTCTCATTAACGATGACGAGATCA
AAACTGCCGAGACGTATTTCTACAGGAAAGCATCACAAGAGATAATTCAA
TTCCTTCCAAAATCAAAATATGAAAATATCACCAGACTCAACAACAATGG
AATTTTGGTGTACACTGGTCGAATCCTCGCCGATGATCAAGTATCCATAG
TTGGACGTTTCACCAAATCAATGAAAGATTTATCTTCAACATCCTTTTGC
GTACCAGTTATAGACAGAAGATCACCAATTGCATATAGTATCATCCTCGA
CACACATTGGAATCATCCAGAAGTCAGTCATGCTGGGATAGAGTCCACAC
TTCGCTATGTCCTCAAGAAAGTTTACATCCTTGAAGGTCGAATTCTTATC
AAATCCATCAAAAGTTCGTGTCAACGTTGCAAGTTTTTGGCCAAACGAAC
CATCGACATGGCTATGGGTCCAATCTCCAGATGCAATATCACCATAGCTC
CAGCATTCTTCTACACCCAAGTCGACCTATCTGGACCGTTTCAATGCTAC
ACACCACACCACAAACGAAAGACAGTTAAAATATGGTTGGCTGTCTTCTG
CTGCTGCTCTACATCAGCTGTCAAAATCAAGGTTTTGGACGATTATGGAC
GATCATTGAAAAGTCTTCATGATTCATCTATCAAGCTGACCGATAGCCAA
ATTGCAATGTACTGGATAAGCAATCACGACAAACCTTTGAAAAAGTGGGT
TCGAAGTCGCGTCTTAGAAATCCTTCGTTTCTCGGACAAGAAAGATTGGT
ACTACGTCCCAACAGATCAAAACCTTGCAGACCTTGGCACCAGAAGAGGA
GCCACATTCCAGGATATCGACCAATCATCTAATTGGATCAATGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051758-exon-scaffold_204-1575043694:109293..109539 | TCONS_00051758-exon-scaffold_204-1575043694:109293..109539 | Clytia hemisphaerica | exon |
| TCONS_00051758-exon-scaffold_204-1575043694:108278..109204 | TCONS_00051758-exon-scaffold_204-1575043694:108278..109204 | Clytia hemisphaerica | exon |
| TCONS_00051758-exon-scaffold_204-1510915933:109293..109539 | TCONS_00051758-exon-scaffold_204-1510915933:109293..109539 | Clytia hemisphaerica | exon |
| TCONS_00051758-exon-scaffold_204-1510915933:108278..109204 | TCONS_00051758-exon-scaffold_204-1510915933:108278..109204 | Clytia hemisphaerica | exon |
| TCONS_00051758-exon-scaffold_204-1491911889:109293..109539 | TCONS_00051758-exon-scaffold_204-1491911889:109293..109539 | Clytia hemisphaerica | exon |
| TCONS_00051758-exon-scaffold_204-1491911889:108278..109204 | TCONS_00051758-exon-scaffold_204-1491911889:108278..109204 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_204 | supercontig | scaffold_204:108278..109539 - |
Blast
The following BLAST results are available for this feature:
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