TCONS_00051749 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051749
Unique NameTCONS_00051749
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length686

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051749 ID=TCONS_00051749|Name=TCONS_00051749|organism=Clytia hemisphaerica|type=transcript|length=686bp
GAAGAATCAGGACCCATAGATTGTTGATAATCGGGCTGGTATTTTCATCA
CATGTAACAACCGTCCGAAATACGGCGACGATCAAAAAGACGTGGAAGAT
AGGATGGAGTACATGCAGACAAAGGAAATTCCTGAGGACGAGCGTGACTC
GTTTGCAGCCACATGGATCCGTGAGCATGCGTTTGAATGCCTCCTCTGGA
TGTGCAATATGATGCGCgaaaatgatgaatttattgatGAGAAGGAACTG
TTCTTTGTGAAAACAGTTGACGACTACGTACCAGTAAAGATTAACGTGTG
TGTACCAGATGAAGAACTTCGAAAGCTCGCTGGTATTCgtgataaaaaat
caaccaacaaGACAACGCCGCCCGTGTCCAACCGAATCGATACAACAGCT
TATATAGACGATGGTCAACAACCGGGCTTTTCAAAGTGGTCAGATGAGCA
CAATCCACCCCAGTGTGATTCAACTGATTCTGAAGAAAGGACAGCTGAGA
GACTACGACGACTAAAGGAGAGAAGACGGGTACGAAAGCGTCACATTGAA
ACAACTGATGAAGACACAGAAGAAGACGAAGAAGATTTGTTATGCGGGGT
CAATGAAACAATGAATGCCTTGCTGGCTCATCTTGACTACGCTGAAGATG
GTGAACAAGTAGATTTCGTGGCTACTTTCCCCACGA
Run BLAST on NCBI

transcript from alignment at scaffold_204:39517..41278+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051749 ID=TCONS_00051749|Name=TCONS_00051749|organism=Clytia hemisphaerica|type=transcript|length=1762bp|location=Sequence derived from alignment at scaffold_204:39517..41278+ (Clytia hemisphaerica)
GAAGAATCAGGACCCATAGATTGTTGATAATCGGGCTGGTGAGTACAGTG
ATTTTGTTTAGCTTGTTTTCTTATTTGCTTTTTTTCCAATGGTTGCTTTG
AATATAGCCTTTTTCGCGTTGTGGAATAGACACCCTAAGTGACTACGATC
ATTCTTTTACGTCAGGTATTTTCATCACATGTAACAACCGTCCGAAATAC
GGCGACGATCAAAAAGACGTGGAAGATAGGATGGAGTACATGCAGACAAA
GGAAATTCCTGAGGACGAGCGTGACTCGTTTGCAGCCACATGGATCCGTG
AGCATGCGTTTGAATGCCTCCTCTGGATGTGCAATATGATGCGCgaaaat
gatgaatttattgatGAGAAGGAACTGTTCTTTGTGAAAACAGTTGACGA
CTACGTACCAGTAAAGGTAAAGTTTTATGTTGTATTTTACGTGAAGTTAT
TTAGTTTAGAGTGATGTATTTCATTTTTGAGCACTTAATTTACAGAAACA
ATTAACTTGTGGTAACTTAAACACTgtcatttttgaatttaaaaccacTA
CCGTTTCTTCTAGATTAACGTGTGTGTACCAGATGAAGAACTTCGAAAGC
TCGCTGGTATTCgtgataaaaaatcaaccaacaaGACAACGCCGCCCGTG
TCCAACCGAATCGATACAACAGCTTATATAGACGATGGTCAACAACCGGG
CTTTTCAAAGTGGTCAGATGAGCACAATCCACCCCAGTGTGATTCAACTG
ATTCTGAAGAAAGGACAGGTAAATTCTTTCACTTACTTGCTAAGTGACAC
TTGAAATTTAATGTGCATTTACAAATGCATCAAAACACCTAATAACAAGT
TGACAAAACTGTCATTTGTAAGACTTTTTTATCCTTTTCGTTTTTAGCTG
AGAGACTACGACGACTAAAGGAGAGAAGACGGGTACGAAAGCGTCACATT
GAAACAACTGATGAAGACACAGAAGAAGGTAACTCTTTAGACATTGAGAC
TCTTGGTAATCATTCATCTCTCCAGTAGATATTTTTACTTAAATACGTTC
AACACTTTGCTTTTTTAGAACAACCTCGAAAAAGAAATTCCTACGAACCC
GAGAACGAACATGAATGTCATAGATTTGAAGGTATAATCTTTTGCCCTGA
TATTGCAAGAATATATAGGCTAGAGGCTAGTGGATCAATTAGATGTGGAT
ATTTTTCTGGCCATTCAAACCATTATACACTTTACACAACCTGTAAGAGA
CGTGTTTTTTCGAAAGGATTACTTTCAAGGATGTTTGGGAAAACTTCAGA
TCTCAAGTCTAGTTGCTGAACTAAAATTTAATTTCCTTGTATTTCAGACG
AAGAAGATTTGTTATGCGGGGTCAATGAAACAATGAATGCCTTGCTGGCT
CATCTTGACTACGCTGGTGAGTAAAGACTTTCTTCTAGCTCTctagaaaa
gaaagaaacatcATCTAAAATTTCTTAGGTTTATTCATTTGAAGCTTTTA
GCCGTTATATAGATATAGATCAGAACTTTGAAACGATTTAActcatttca
ttttaaattttgaaattccatAAATGGTTTTGGGAAATTTTCCTGTTCAA
TGTTTTATAAATTNAAATTTTGAAATTCCATAAATGGTTTTGGGAAATTG
TCCTGTTCAATGTTTTATAAATTAACTTGTCAGTGATTGAACATAACAAG
GCTTCTTTTCAACTTTCTAGAAGATGGTGAACAAGTAGATTTCGTGGCTA
CTTTCCCCACGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032761XLOC_032761Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051749-exon-scaffold_204-1491911889:39517..39554TCONS_00051749-exon-scaffold_204-1491911889:39517..39554Clytia hemisphaericaexon
TCONS_00051749-exon-scaffold_204-1510915933:39517..39554TCONS_00051749-exon-scaffold_204-1510915933:39517..39554Clytia hemisphaericaexon
TCONS_00051749-exon-scaffold_204-1575043694:39517..39554TCONS_00051749-exon-scaffold_204-1575043694:39517..39554Clytia hemisphaericaexon
TCONS_00051749-exon-scaffold_204-1491911889:39682..39932TCONS_00051749-exon-scaffold_204-1491911889:39682..39932Clytia hemisphaericaexon
TCONS_00051749-exon-scaffold_204-1510915933:39682..39932TCONS_00051749-exon-scaffold_204-1510915933:39682..39932Clytia hemisphaericaexon
TCONS_00051749-exon-scaffold_204-1575043694:39682..39932TCONS_00051749-exon-scaffold_204-1575043694:39682..39932Clytia hemisphaericaexon
TCONS_00051749-exon-scaffold_204-1491911889:40080..40284TCONS_00051749-exon-scaffold_204-1491911889:40080..40284Clytia hemisphaericaexon
TCONS_00051749-exon-scaffold_204-1510915933:40080..40284TCONS_00051749-exon-scaffold_204-1510915933:40080..40284Clytia hemisphaericaexon
TCONS_00051749-exon-scaffold_204-1575043694:40080..40284TCONS_00051749-exon-scaffold_204-1575043694:40080..40284Clytia hemisphaericaexon
TCONS_00051749-exon-scaffold_204-1491911889:40414..40494TCONS_00051749-exon-scaffold_204-1491911889:40414..40494Clytia hemisphaericaexon
TCONS_00051749-exon-scaffold_204-1510915933:40414..40494TCONS_00051749-exon-scaffold_204-1510915933:40414..40494Clytia hemisphaericaexon
TCONS_00051749-exon-scaffold_204-1575043694:40414..40494TCONS_00051749-exon-scaffold_204-1575043694:40414..40494Clytia hemisphaericaexon
TCONS_00051749-exon-scaffold_204-1491911889:40864..40932TCONS_00051749-exon-scaffold_204-1491911889:40864..40932Clytia hemisphaericaexon
TCONS_00051749-exon-scaffold_204-1510915933:40864..40932TCONS_00051749-exon-scaffold_204-1510915933:40864..40932Clytia hemisphaericaexon
TCONS_00051749-exon-scaffold_204-1575043694:40864..40932TCONS_00051749-exon-scaffold_204-1575043694:40864..40932Clytia hemisphaericaexon
TCONS_00051749-exon-scaffold_204-1491911889:41237..41278TCONS_00051749-exon-scaffold_204-1491911889:41237..41278Clytia hemisphaericaexon
TCONS_00051749-exon-scaffold_204-1510915933:41237..41278TCONS_00051749-exon-scaffold_204-1510915933:41237..41278Clytia hemisphaericaexon
TCONS_00051749-exon-scaffold_204-1575043694:41237..41278TCONS_00051749-exon-scaffold_204-1575043694:41237..41278Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_204supercontigscaffold_204:39517..41278 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.68862e-06	4.71457e-09	0	0.000526619	0	0	0	0	0	0	0.000373955	0	0	1.33244e-05	0	0	0	0	0	3.16426e-06	0	0	0.0060752	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051749 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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