TCONS_00051712 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051712
Unique NameTCONS_00051712
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length795

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051712 ID=TCONS_00051712|Name=TCONS_00051712|organism=Clytia hemisphaerica|type=transcript|length=795bp
NNAATTCACATTTGATCGATTTGCCTCATATACAAACAGAAAGGTTGACT
CATTTAATTCAAAATTCTATTGTCCAGGCACCCTAGGAGTAGACAGTTTT
ACATGTGATTGGAGTAACCATTTCAATTGGCTTTGTCCACCAATATCTTT
AATAGGTGACACACTACGACATTTGAAAAGTTGCAAAGGCAAAGGTGTAT
TGTTTGTTCCGCTCTGGAGATCAGCATATTATTGGCCCTTGATAACTAAA
AAGGAGGGGACTTTCGAGAGTTTTGTGTCAGGATATCTAATTTTGCAACC
ATATTTTCTATCAAATTGTAGTTCATTATTTAAAGGATTCGCAAATTTTA
ATTCGATTGCTTTGTATCTAGATTTTTCATCTCTAGAGAAGACAtccaaa
taatttcattttcaaatgatgctagaatgattttttcctactgcCATATG
TGACCAATTTTATGTTAATGATGGGATTGAGACTAAAACTTTGCCATTTA
TCTTTCCCTGTACCAGCAGTGGCTGGGTAGTACAGAATGGATTCGGATTT
TATCTGTACCAGTAGTGGCTGGGTAGTACAGATGGTAGTAACTGTTTCCT
CATGTACCAGGAGTGACTGGGTAGTACATGGTTTAAATCTACTGTTCCTG
TACCAGCTGTGGCTGGGTAGTACAGGGCTAAATTTCGTTTTTCCTGTACC
AGTAGTGGCTGGGTAGTACAGGTGCATTGATTAGTATGCTAGAGAAAAGT
CAAGtgagattttattttgattgctTGTAGGCACAGAAGAACANN
Run BLAST on NCBI

transcript from alignment at scaffold_202:926385..927179

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051712 ID=TCONS_00051712|Name=TCONS_00051712|organism=Clytia hemisphaerica|type=transcript|length=795bp|location=Sequence derived from alignment at scaffold_202:926385..927179 (Clytia hemisphaerica)
NNTGTTCTTCTGTGCCTACAagcaatcaaaataaaatctcaCTTGACTTT
TCTCTAGCATACTAATCAATGCACCTGTACTACCCAGCCACTACTGGTAC
AGGAAAAACGAAATTTAGCCCTGTACTACCCAGCCACAGCTGGTACAGGA
ACAGTAGATTTAAACCATGTACTACCCAGTCACTCCTGGTACATGAGGAA
ACAGTTACTACCATCTGTACTACCCAGCCACTACTGGTACAGATAAAATC
CGAATCCATTCTGTACTACCCAGCCACTGCTGGTACAGGGAAAGATAAAT
GGCAAAGTTTTAGTCTCAATCCCATCATTAACATAAAATTGGTCACATAT
Ggcagtaggaaaaaatcattctagcatcatttgaaaatgaaattatttgg
aTGTCTTCTCTAGAGATGAAAAATCTAGATACAAAGCAATCGAATTAAAA
TTTGCGAATCCTTTAAATAATGAACTACAATTTGATAGAAAATATGGTTG
CAAAATTAGATATCCTGACACAAAACTCTCGAAAGTCCCCTCCTTTTTAG
TTATCAAGGGCCAATAATATGCTGATCTCCAGAGCGGAACAAACAATACA
CCTTTGCCTTTGCAACTTTTCAAATGTCGTAGTGTGTCACCTATTAAAGA
TATTGGTGGACAAAGCCAATTGAAATGGTTACTCCAATCACATGTAAAAC
TGTCTACTCCTAGGGTGCCTGGACAATAGAATTTTGAATTAAATGAGTCA
ACCTTTCTGTTTGTATATGAGGCAAATCGATCAAATGTGAATTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032743XLOC_032743Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051712-exon-scaffold_202-1491911889:926385..927179TCONS_00051712-exon-scaffold_202-1491911889:926385..927179Clytia hemisphaericaexon
TCONS_00051712-exon-scaffold_202-1510915933:926385..927179TCONS_00051712-exon-scaffold_202-1510915933:926385..927179Clytia hemisphaericaexon
TCONS_00051712-exon-scaffold_202-1575043694:926385..927179TCONS_00051712-exon-scaffold_202-1575043694:926385..927179Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:926385..927179 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
33.4435	32.2694	12.2971	10.1221	41.8254	30.3893	76.7532	74.3784	125.624	109.298	86.5852	118.096	113.629	98.4211	55.2263	51.5897	71.5962	91.2275	48.9044	36.3396	97.0376	100.74	41.5494	51.9841	92.9031	99.3164	64.9381	55.8017	30.7893	28.4271
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051712 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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