TCONS_00051661 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051661
Unique NameTCONS_00051661
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length962

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051661 ID=TCONS_00051661|Name=TCONS_00051661|organism=Clytia hemisphaerica|type=transcript|length=962bp
AATTAGAAtagaaaatttctttattgGAAATAAAACGTCCTGTAGTGATA
TTTACATCGATAAATGAGATATACAGTGTGTCCAGGAAAACTCACACAAC
TCAATGTTACtactcaattcaaatttttgaatagAAAATAATTAACTTTG
GAAATTTAATTCTATAGACACTCTTACCCAGATCCATTGCACCTTTTTTT
GATTTCACTGATAAACATAATACAATCCTAtcacagaatcataaaaaagc
caGCCaaaggactgggttcgagtttgtcATGATtactatacacccctgtc
tcgcagccccggtggaacttttttcctcatagtggggataaaaattcctg
ttgaaatctcaatgggggatagaaattctattgttccaaggtttaaAAAA
CCCGGTGGGGGTGGTTTTAGAGTACAATTTTTTAAACACTGAATTTCGAA
CgcgaatgaaatcaaagtcaatttcccagtggggtatATTCCggggtatt
tttccaccggggacgaaatttttgtcaaattttctagtggggctggggtc
caagtgggtctgtgacacaggggtgttactATCAACAAGAAGCCACGGGG
GTTCTAGTTTATATCAAGGTTGTGCCGCTTTTTCTGGACACACTGTTAAT
GGAAAATGTCATAATTTTCTCTTAGATACTAAAAAACTAGATAATAATTT
ACAATAATGAAATCAataatatcaaccaatcaatgaGATTCGCTATCGAT
CAACAAATGGTCACAAATTTCAATCCGAAAAATTATGCTCAAAATAACAA
TCATCATGAATAATTGGAATAAAATAACCTATCAACAATCATTCTCCGTA
TGGTTTTTCCAGTCGCGCGTGACATGTCGGTAAATGATACTCGGTGTAAT
GAGCTATGAGATCAGGTAAGCGTTCAAAGAACGGTTCATCATCTTTCaaa
tatagtttgttc
Run BLAST on NCBI

transcript from alignment at scaffold_202:1156906..1158256-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051661 ID=TCONS_00051661|Name=TCONS_00051661|organism=Clytia hemisphaerica|type=transcript|length=1351bp|location=Sequence derived from alignment at scaffold_202:1156906..1158256- (Clytia hemisphaerica)
AATTAGAATAGAAAATTTCTTTATTGGAAATAAAACGTCCTGTAGTGATA
TTTACATCGATAAATGAGATATACAGTGTGTCCAGGAAAACTCACACAAC
TCAATGTTACTACTCAATTCAAATTTTTGAATAGAAAATAATTAACTTTG
GAAATTTAATTCTATAGACACTCTTACCCAGATCCATTGCACCTTTTTTT
GATTTCACTGATAAACATAATACAATCCTATCACAGAATCATAAAAAAGC
CAGCCAAAGGACTGGGTTCGAGTTTGTCATGATTACTATACACCCCTGTC
TCGCAGCCCCGGTGGAACTTTTTTCCTCATAGTGGGGATAAAAATTCCTG
TTGAAATCTCAATGGGGGATAGAAATTCTATTGTTCCAAGGTTTAAAAAA
CCCGGTGGGGGTGGTTTTAGAGTACAATTTTTTAAACACTGAATTTCGAA
CGCGAATGAAATCAAAGTCAATTTCCCAGTGGGGTATATTCCGGGGTATT
TTTCCACCGGGGACGAAATTTTTGTCAAATTTTCTAGTGGGGCTGGGGTC
CAAGTGGGTCTGTGACACAGGGGTGTTACTATCAACAAGAAGCCACGGGG
GTTCTAGTTTATATCAAGGTTGTGCCGCTTTTTCTGGACACACTGTTAAT
GGAAAATGTCATAATTTTCTCTTAGATACTAAAAAACTAGATAATAATTT
ACAATAATGAAATCAATAATATCAACCAATCAATGAGATTCGCTATCGAT
CAACAAATGGTCACAAATTTCAATCCGAAAAATTATGGTAAGAAAATCTT
GAACACTTTTTTTAAAATATGTGAGTAAAAACCTTGGACATCGATAATGC
AGGCGAAATTGTCTTATACTTTATTGCTTTTTTGTACACCAGGGCCATTA
ATTTTCAGCCGAATGTGAATTTTGGTTTGCCATTATTCTCTTGCCAGATA
AAACTCTTTTTTCTCAAATCGGAATAACTTTGTTCACAGCGGTATTATTG
TTCGATAAAAATCAAGAAAACAAAAATTTGTTCAATTTATTGTAAAAGCT
TTTCGACTAGGTATTATTGTTCCAAATATAGGCATCTCCTGGTTATCCTT
GCCTTTCACCGCTTCAAATAGGATACTTTTTATTCTGTTCGTAACCAATA
AACACCAATCTTTTGTACATCTCCAGCTCAAAATAACAATCATCATGAAT
AATTGGAATAAAATAACCTATCAACAATCATTCTCCGTATGGTTTTTCCA
GTCGCGCGTGACATGTCGGTAAATGATACTCGGTGTAATGAGCTATGAGA
TCAGGTAAGCGTTCAAAGAACGGTTCATCATCTTTCAAATATAGTTTGTT
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032699XLOC_032699Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051661-exon-scaffold_202-1575043694:1157470..1158256TCONS_00051661-exon-scaffold_202-1575043694:1157470..1158256Clytia hemisphaericaexon
TCONS_00051661-exon-scaffold_202-1575043694:1156906..1157080TCONS_00051661-exon-scaffold_202-1575043694:1156906..1157080Clytia hemisphaericaexon
TCONS_00051661-exon-scaffold_202-1510915933:1157470..1158256TCONS_00051661-exon-scaffold_202-1510915933:1157470..1158256Clytia hemisphaericaexon
TCONS_00051661-exon-scaffold_202-1510915933:1156906..1157080TCONS_00051661-exon-scaffold_202-1510915933:1156906..1157080Clytia hemisphaericaexon
TCONS_00051661-exon-scaffold_202-1491911889:1157470..1158256TCONS_00051661-exon-scaffold_202-1491911889:1157470..1158256Clytia hemisphaericaexon
TCONS_00051661-exon-scaffold_202-1491911889:1156906..1157080TCONS_00051661-exon-scaffold_202-1491911889:1156906..1157080Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:1156906..1158256 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.590901	0.385103	0.440018	0.844734	0	0	0	0	0.0553692	0	0	0	0	0	0	0.0361801	0	0	0	0	0	0	0	0.231418	0	0	0.117801	0	0	0.0801579
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051661 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top