TCONS_00051649 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051649
Unique NameTCONS_00051649
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length971

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051649 ID=TCONS_00051649|Name=TCONS_00051649|organism=Clytia hemisphaerica|type=transcript|length=971bp
AAATGACAAAGAGTAGCTTGCACTTGACTTTAAgacgaaattgaaaattt
ttcaaagaaacaatATGGTTAAACTATCAATGACTTGTTTGTTGGCTTTa
gtgattttgagcctcgttctGGTGGTAAAAGAGGCTGAAGGACTTTCAGT
TTTCGGAGCAGAGGCTGTTGGCAAGGGCAACAAATCAGTGTCGGAAAAAA
TGAGCCAATTTTGTTCTATTCATCCACACATTTGCAAAGAAATCATGATC
GGAAAAGGACGAAAACAACGAAAACAAAACTACAGACTGGTCAAAATGAT
GGCTAAAGCTTTGATCAAACGATGATAAAACTGGATTGATGATTGACAGC
ATTTGAAGTGGAAAGATGAATTGATATAAGAATCTGAAGAGCAAACGCGA
CGTCAAAACAAACGTTTTTTTAACATTCATGACATACATTCAACGTCGTA
TGAACGTTTAAATCATGACGAATTGAGATAAGAATCTGAAGAGCGACGCG
AcgtcaaaacaacatttttctaACATCCATGGCAAACAGTCAACGTCGTA
TGAACATTCATATCACGTTGCTTGCACGTTCTGTGGATTTGTTGAGTTGA
AGTGTCTTGTGACGACTGTAGAAAGAACTTCATTGCTATAGTTTGGTTTT
AAGAGATATTCTCAAAAATTACACTCAAAAAATGGGTACTAACTGTGATT
GAAAGACGAAGGGTATTTTACCCTGATAGTACATTTCAAAGAATATGGCA
TGATGCGAAAACataaactaaaaatgaaaaaacatttagaGAAGTTAAGT
GAGAATGGATTCAATCATTCGATGTGTAACGATTGCCATTGGTTATTGGC
TGAAACAATTGAGGCGGATTGACTATGGAAACTCGAAACATAGACAAAAT
ACTAAAATAAAGTCAAACATCTTAACAATACAGGCCTGGCGGAAGCGCGG
AGACTGGGCAGACTTCAGCCT
Run BLAST on NCBI

transcript from alignment at scaffold_202:883351..884599-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051649 ID=TCONS_00051649|Name=TCONS_00051649|organism=Clytia hemisphaerica|type=transcript|length=1249bp|location=Sequence derived from alignment at scaffold_202:883351..884599- (Clytia hemisphaerica)
AAATGACAAAGAGTAGCTTGCACTTGACTTTAAGACGAAATTGAAAATTT
TTCAAAGAAACAATATGGTTAAACTATCAATGACTTGTTTGTTGGCTTTA
GTGATTTTGAGCCTCGTTCTGGTGGTAAAAGAGGCTGAAGGACTTTCAGT
TTTCGGAGCAGAGGCTGTTGGCAAGGGCAACAAATCAGTGGTGAGATATA
TAGTAGCTCTTTGACGATTCTTTGTGACAGTTTTACTTTGTAATAGTTTA
ACGTGCCTCAAAAAAGGAGCCAAGAAATGAGAAAAATCTAAGAATAAACC
TTTCAGAATAATTGAATTTCGAGTGTAAATTAATAGTGAAAGTAGTAAAA
GCAGGGTATGAAAAATGAAATTTCACTTCTTCATATTTTTGAGTGATTTA
GATTTCTTCAAGAAAAATATTGTTGCAATTGACAATTTTATGACATTTTC
TCTTTTCATATTATTCAGTCGGAAAAAATGAGCCAATTTTGTTCTATTCA
TCCACACATTTGCAAAGAAATCATGATCGGAAAAGGACGAAAACAACGAA
AACAAAACTACAGACTGGTCAAAATGATGGCTAAAGCTTTGATCAAACGA
TGATAAAACTGGATTGATGATTGACAGCATTTGAAGTGGAAAGATGAATT
GATATAAGAATCTGAAGAGCAAACGCGACGTCAAAACAAACGTTTTTTTA
ACATTCATGACATACATTCAACGTCGTATGAACGTTTAAATCATGACGAA
TTGAGATAAGAATCTGAAGAGCGACGCGACGTCAAAACAACATTTTTCTA
ACATCCATGGCAAACAGTCAACGTCGTATGAACATTCATATCACGTTGCT
TGCACGTTCTGTGGATTTGTTGAGTTGAAGTGTCTTGTGACGACTGTAGA
AAGAACTTCATTGCTATAGTTTGGTTTTAAGAGATATTCTCAAAAATTAC
ACTCAAAAAATGGGTACTAACTGTGATTGAAAGACGAAGGGTATTTTACC
CTGATAGTACATTTCAAAGAATATGGCATGATGCGAAAACATAAACTAAA
AATGAAAAAACATTTAGAGAAGTTAAGTGAGAATGGATTCAATCATTCGA
TGTGTAACGATTGCCATTGGTTATTGGCTGAAACAATTGAGGCGGATTGA
CTATGGAAACTCGAAACATAGACAAAATACTAAAATAAAGTCAAACATCT
TAACAATACAGGCCTGGCGGAAGCGCGGAGACTGGGCAGACTTCAGCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032692XLOC_032692Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051649-exon-scaffold_202-1575043694:884410..884599TCONS_00051649-exon-scaffold_202-1575043694:884410..884599Clytia hemisphaericaexon
TCONS_00051649-exon-scaffold_202-1575043694:883351..884131TCONS_00051649-exon-scaffold_202-1575043694:883351..884131Clytia hemisphaericaexon
TCONS_00051649-exon-scaffold_202-1510915933:884410..884599TCONS_00051649-exon-scaffold_202-1510915933:884410..884599Clytia hemisphaericaexon
TCONS_00051649-exon-scaffold_202-1510915933:883351..884131TCONS_00051649-exon-scaffold_202-1510915933:883351..884131Clytia hemisphaericaexon
TCONS_00051649-exon-scaffold_202-1491911889:884410..884599TCONS_00051649-exon-scaffold_202-1491911889:884410..884599Clytia hemisphaericaexon
TCONS_00051649-exon-scaffold_202-1491911889:883351..884131TCONS_00051649-exon-scaffold_202-1491911889:883351..884131Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:883351..884599 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.325911	0.726433	0.158148	0.0515745	0.062787	0	0.0598586	0.112078	0.0392341	0	0	0	12.6646	14.5994	12.7958	18.782	3.14563	9.77998	1.28682	0.310745	0	0	0.533833	0.242666	0.049988	0	0	0	0.0516765	0.0526502
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051649 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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