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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051646 ID=TCONS_00051646|Name=TCONS_00051646|organism=Clytia hemisphaerica|type=transcript|length=606bp
GCAGGCCTTACATTATTGATTTGGAATCCACTAATGGCACTTTTGTCAAC
AACAATAAAGTTGAGCCAAGGAGATATGTGGAACTCATTGAAAAGgATGT
GATAAAGTTTGGATTCAGTTCTCGGGAGTATGTCATTTTACATGAGAAGT
CACAAGCTGACCAAGATTCGGAAGATGAAACTGAAGACGAAGAAAAAGCT
GCAGGATCTGACAAAGAGTGAAATGCAGAGAGCAATACTCAATGTTATTC
TTGAATAAGACGTGAATACTGTGAATACTGGCGAGTTTGATGTGTTGAAA
ATATTGAGCTGTATCATTTTTTTATTGTCTACAACGAGCATTTCGAGGGA
TTTTCAAGACATCTTACAGTATATATTCTGTTGTGAAGTTTGGATATGAC
TGGATATGATCCAGTGATGCTTTTGAAACCATCGGAGCTTTGTGACCTCA
AATAAACACTGTTTATACTATGAatggatgaattttttttgtgtatcaaa
tatataaaaaaacgtaaagTTGACTAGATATACTTCTTTGGCAtttggaa
aaacatttttttgtaagGTAAAGGTCAGgatgaaatttcataaaaatata
aaaaat Run BLAST on NCBI transcript from alignment at scaffold_202:680660..682801- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051646 ID=TCONS_00051646|Name=TCONS_00051646|organism=Clytia hemisphaerica|type=transcript|length=2142bp|location=Sequence derived from alignment at scaffold_202:680660..682801- (Clytia hemisphaerica)
GCAGGCCTTACATTATTGATTTGGAATCCACTAATGGCACTTTTGTCAAC
AACAATAAAGTTGAGCCAAGGAGATATGTGGAACTCATTGAAAAGGTCTG
GTCTGTTACAATAGTTTTTCCATTATTGAAGAAAAATTATGACAAAATTT
ATCAATTTCCAAATTTCTACCGGGTGGATGTCTATAATTTTTACAAAACT
AGATTTTGAAAGTTTTTGTTCAAATTTTCTGGAAATAATAGAGTTAAGTC
GAATCATCTATCTTCATCATCATTTCTTCTCGAAATATTCTAATCTAATT
CTAATCAATCTATTTTTAGTTCTTTCACTCGTCAAGACAGTTTCAATATA
ACGTCTAGGTGTCCCATACCCTCCCTAGCTGGGCCAGCCTGCTTCATTTG
AACAACCCTTAATTAATTATTAATTAATTAATTAATTAACCGATCATCCA
TTCTACGCATTCTACGCTCTGCTCTAAAGGGATATGGCGAATGTGACGAT
CTGGCCTGCTTTTCAGCGAAAACAATCAAAACTGCGTTGTTTTTTGCTTG
AAAACGAAATCAAAAGCAAAAGCGACTGGATTCTAACGTTTATGATTTAA
TGTTCATTCCAAATCTGGTTGAAAAAGATCAAAGCGATGTGCCAACCTGG
TCAGATTCTCTTACGGAGCCTTGACCTTTACAGTGAAAATGTGTCATGCG
TGGAATATCAGAATCTGCTTGGAAATTAAACAACCCTTTAACTAAAAATG
CTCATTAAAACTTGATTAAAATTTGATTTATTTTAGGATGTGATAAAGTT
TGGATTCAGTTCTCGGGAGTATGTCATTTTACATGAGAAGTCACAAGCTG
ACCAAGATTCGGAAGATGAAACTGAAGACGAAGAAAAAGCTGCAGGATCT
GACAAAGAGTGAAATGCAGAGGTAGCATATCAAACCAAAATTAATTAATT
TTAGAAGAGTATTCCCTGTTAATTACTCTTTATCGATATGTTTTCTTCAG
TTACTGAAGTCAATTCAAAGGAGAGACATGGCTGCAGGATCTGACAAAGA
GTGAATATTATAACCACAAAGTGTTATTGTTTGAGGCAATTTAAAATAGC
TGGAGGATCTGGCAAAGAGTGATAATAAAGGCACCATATTACCCAAATTA
ATTAATTTTACAAGAGTATTGCCCCTTATAACTACTCTTTATGGATATGT
TCTCTTCCATAAATTGTTGTTACTGTTNCCCAAATTAATTAATTTTACAA
CAGTATTGCCCCTTATAACTACTCTTTATGGATATGTTCTCTTCAGTTAC
TGAAGTCAATTCAAAGGAGAGACATAGAAAAAATGGCTGCAAGTCCTGAC
GAAGAGTGAATATTATAACCACAAAGTGTTATTGTTTGAGGCAATTTAAA
ATAGCTGGAGGATCTGGCAAAGAGTGATAATAAAGGCACCATATTACCCA
AATTAATTAATTTTACAAGAGTATTGCCCCTTATAACTACTCTTTATGGA
TATGTTCTCTTCCATAAATTGTTGTTACTGTTATCAGTCTCTGAGGCAAT
TCAAAGGAGACATGAAGATGAAGTAGCTGAAGGATCTGTATACAAGAAAC
AAAGAAATTTAAAACCATATATCGTTTGATTATGAAAAATACTTTGACAA
TTAATGTCTTATTACTTTCTTATACGACAAATATACTATTGTATATTATA
TTTTTCATATGAAAATTGATGTTGTCATGTTACATCGAAAATCATAAATT
TTTTTTTTGGTTGCAGAGCAATACTCAATGTTATTCTTGAATAAGACGTG
AATACTGTGAATACTGGCGAGTTTGATGTGTTGAAAATATTGAGCTGTAT
CATTTTTTTATTGTCTACAACGAGCATTTCGAGGGATTTTCAAGACATCT
TACAGTATATATTCTGTTGTGAAGTTTGGATATGACTGGATATGATCCAG
TGATGCTTTTGAAACCATCGGAGCTTTGTGACCTCAAATAAACACTGTTT
ATACTATGAATGGATGAATTTTTTTTGTGTATCAAATATATAAAAAAACG
TAAAGTTGACTAGATATACTTCTTTGGCATTTGGAAAAACATTTTTTTGT
AAGGTAAAGGTCAGGATGAAATTTCATAAAAATATAAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051646-exon-scaffold_202-1575043694:682707..682801 | TCONS_00051646-exon-scaffold_202-1575043694:682707..682801 | Clytia hemisphaerica | exon |
| TCONS_00051646-exon-scaffold_202-1575043694:681881..682015 | TCONS_00051646-exon-scaffold_202-1575043694:681881..682015 | Clytia hemisphaerica | exon |
| TCONS_00051646-exon-scaffold_202-1575043694:680660..681035 | TCONS_00051646-exon-scaffold_202-1575043694:680660..681035 | Clytia hemisphaerica | exon |
| TCONS_00051646-exon-scaffold_202-1510915933:682707..682801 | TCONS_00051646-exon-scaffold_202-1510915933:682707..682801 | Clytia hemisphaerica | exon |
| TCONS_00051646-exon-scaffold_202-1510915933:681881..682015 | TCONS_00051646-exon-scaffold_202-1510915933:681881..682015 | Clytia hemisphaerica | exon |
| TCONS_00051646-exon-scaffold_202-1510915933:680660..681035 | TCONS_00051646-exon-scaffold_202-1510915933:680660..681035 | Clytia hemisphaerica | exon |
| TCONS_00051646-exon-scaffold_202-1491911889:682707..682801 | TCONS_00051646-exon-scaffold_202-1491911889:682707..682801 | Clytia hemisphaerica | exon |
| TCONS_00051646-exon-scaffold_202-1491911889:681881..682015 | TCONS_00051646-exon-scaffold_202-1491911889:681881..682015 | Clytia hemisphaerica | exon |
| TCONS_00051646-exon-scaffold_202-1491911889:680660..681035 | TCONS_00051646-exon-scaffold_202-1491911889:680660..681035 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:680660..682801 - |
Blast
BLAST of TCONS_00051646 vs. Swiss-Prot (Human)
Match: SNIP1 (Smad nuclear-interacting protein 1 OS=Homo sapiens GN=SNIP1 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 5.942e-19 Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = 3
Query: 3 RPYIIDLESTNGTFVNNNKVEPRRYVELIEKDVIKFGFSSREYVILHEKS 152
+PYIIDL S NGTF+NN ++EP+RY EL EKDV+KFGFSSREYV+LHE S
Sbjct: 325 KPYIIDLGSGNGTFLNNKRIEPQRYYELKEKDVLKFGFSSREYVLLHESS 374
The following BLAST results are available for this feature:
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