TCONS_00051620 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051620
Unique NameTCONS_00051620
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1135

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051620 ID=TCONS_00051620|Name=TCONS_00051620|organism=Clytia hemisphaerica|type=transcript|length=1135bp
TAGGACCCTTTATTAAAACACATCGTCTCCGGAtcgaaatttcattaaat
tgtaTTAAACtaaacCctcgacaaaaaaatattaaccgATTGCACTGTAG
GCGGGTGAAATGAATAttgtatttttacaaaatatttgttGATATGTGTC
GCACCCAAAAGGCAACCAGGACCACACAACAACCAGAATATGCATCCAAA
CTTCTAACATTGAACAAACACGTTTTAACGAAGCTGCTTCTAAGCTGGAC
AAAACCATGCCATATATAACTTCCCTAAAAACACTATTTTCACAACAATG
CAATATGTCTAAAATATCGATGAAAATAtgatcaatataaaaaaaaaatc
ccgACGAAAACCAAATTCACATGAACACAAATACATCTCTTATCCGTGTT
TCTGAAAACCAGGCAggatttaaaaatctgaaatatcGCTTGGATGCAag
attgtttttaaaactcACAAGTGGGAATACGGGAACTTCAGGAACTTTCT
TAAATTCAGCTAGGATTGCATAAGAAAAGAGATTAGAACGGTTGATCTTT
TTGCTGCAAAAATTCTATTCGGAAATACTATACGACCTTATCTGGAAATc
acaaccccttctcacagacccggtaggatttgtggggataaaaataaatg
actgaaactcgatggggattgatgttctcatattttttatgaccatggat
ttcaattcttttgttttcaagtcagaaaattgagtGGGGATGAGAAAAAT
AGTaagtattttgcagtgaggattggtttatttgattatttccagtgggg
acaaaaatttaaggaaaatttttcggcgaggacgatattttggttAACTT
TTCTAGTGGGAAGGGTTTGCATCGGGCTTTGAGAAGGGTGTGTGAAATCA
GAATCTAGTGAGATGAGTGATTTTATGGGGTGGATTTTGTATCCTACAAT
AAATGTGTGTCCTACAATAAATTCATTACCAAATAATGACAATGAAAACA
ATTAGAAATGTGAAAGACATCAACCATTTTGAATAAATGATCATCATCGA
GCCATTGCAGCTGTCTGTTTCACAGCATTTGtactagaaagaaaaaaata
aaattgttatatGCACAGATCTCTATTAAATACTG
Run BLAST on NCBI

transcript from alignment at scaffold_202:314610..321370-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051620 ID=TCONS_00051620|Name=TCONS_00051620|organism=Clytia hemisphaerica|type=transcript|length=6761bp|location=Sequence derived from alignment at scaffold_202:314610..321370- (Clytia hemisphaerica)
TAGGACCCTTTATTAAAACACATCGTCTCCGGATCGAAATTTCATTAAAT
TGTATTAAACTAAACCCTCGACAAAAAAATATTAACCGATTGCACTGTAG
GCGGGTGAAATGAATATTGTATTTTTACAAAATATTTGTTGATATGTGTC
GCACCCAAAAGGCAGNTAATATATAGACTCTCGACAAAAAAAATATTAAC
CGATTGCACTGTAGGCGGGTGAAATAAATATTGTATTTTTACAAAATATT
TGTTAATATGTGTCGCACCCAAAAGGCAACCAGGACCACACAACAACCAG
AATATGCATCCAAACTTCTAACATTGAACAAACACGTTTTAACGAAGCTG
CTTCTAAGCTGGACAAAACCATGCCATATATAACTTCCCTAAAAACACTA
TTTTCACAACAATGCAATATGTCTAAAATATCGATGAAAATATGATCAAT
ATAAAAAAAAAATCCCGACGAAAACCAAATTCACATGAACACAAATACAT
CTCTTATCCGTGTTTCTGAAAACCAGGCAGGATTTAAAAATCTGAAATAT
CGCTTGGATGCAAGATTGTTTTTAAAACTCACAAGTGGGAATACGGGAAC
TTCAGGAACTTTCTTAAATTCAGCTAGGATTGCATAAGAAAAGAGATTAG
AACGGTTGATCTTTTTGCTGCAAAAATTCTATTCGGAAATACTATACGAC
CTTATCTGGAAATCACAACCCCTTCTCACAGACCCGGTAGGATTTGTGGG
GATAAAAATAAATGACTGAAACTCGATGGGGATTGATGTTCTCATATTTT
TTATGACCATGGATTTCAATTCTTTTGTTTTCAAGTCAGAAAATTGAGTG
GGGATGAGAAAAATAGTAAGTATTTTGCAGTGAGGATTGGTTTATTTGAT
TATTTCCAGTGGGGACAAAAATTTAAGGAAAATTTTTCGGCGAGGACGAT
ATTTTGGTTAACTTTTCTAGTGGGAAGGGTTTGCATCGGGCTTTGAGAAG
GGTGTGTGAAATCAGAATCTAGTGAGATGAGTGATTTTATGGGGTGGATT
TTGTATCCTACAATAAATGTGTGTCCTACAATAAATTCATTACCAAATAA
TGACAATGAAAACAATTAGAAATGTGAAAGACATCAACCATTTTGAATAA
ATGATCATCATCGAGCCATTGCAGCTGTCTGTTTCACAGCATTTGTACTA
GAAAGAAAAAATGAAATTGAAAATTGTTAGATGGGCAGAATGCCTATAAA
ATACTAACTGGGTCATCTTTTAGCAGTCTTCGCAATTGAAAACTAAGTTA
TTTACACCCCCGTGTCACACACCCGCTGGAGCCCTCAGCCCACTAAAAAT
TGACCAAAAAATCGGAAGAAATTAACCACAGTGGGAAAGTGACATATCAA
TATTATCCCATCGGAAATTAAAGAGAAAAAATATTGCATCCACTCTTGAA
ACTATTGATCTCCATCGGGATTTTGAAAAAGTTAATATCCCAACAAAAAA
GTTCCATCGGGGCATTGAGAAAGGGGTGTCTGTTTCAGCGTTCATTTAAT
GTTATACTAATAGATTTCTGTAAAGCCCGGGGGCTAAGGCTAGAGGGAAT
GTTTTAAGCTTCTCCGAGCAAAAAAGGGAATATCACAAAAGGTATTGTTG
CTATTGTTTTCGAAAATCCACAAAGTCAACTAATTAGTCAAGCGGTGAAA
TTCTATTGTAGTTTTACGTGGCCTAAATAGAATGTCCTATAGTACTCTAT
CTTGTGGTTATACCCGGGGCCTATATGTTAATTAGACATTTCAATCAAAG
CACAGAGTGGAGCTGGACTGCTCTTGAAAATCAGCTAATTATGACCACGA
ATGAGATTGTCTAGGTCTGAGAAAACCAAACAAGATTATTTTCTCTTCAG
AATGTGCATCCAGTTACTCAATTCAACTCTTTCAATCAAGAATGTAAATA
ACACCCCTGTGTCACAGACCCACTGAGACCCCACCGTCACTGGAAAGTTT
GACAAAAATTTCGTCCCCGGTGTGAAAAAGCCCTGTAATTATTTCAGCCC
CACTGGGAAATTGACTTTGATTTCATCCCCATTCGAAATTCCATGTTTAG
AAATTGAACTCAAAACCATCCCACTGGATTTTTAACCTTGGATCAATAGA
ATTTCTATTCCCATTGGGATTTCAATAAGAATTTATCCCAGTTGAAGAAA
GAATTTCCACAGGGGCTGTTATTCAGGGGCGTTAAATATCTTACCAAACA
ATCTCTCTCAGCTGAACCACAAAGTTTGTCACTGTTGCATTGAGTCTTCG
GTGTACAACCTTTCATATGAAATTGCCAGGCGTTAAAAAGTTTCCATGAA
GCCTAAAAATTATGATAAAATATTATATGAAATGTAATAATTTAACGGAA
GATGATAACCTTTTTCGCACCTCATTTTTTGTCAGATTAGCATGGGCTTT
TCCAGAAAAAAACCGTAACCCCGTGTTGAGGAGGTCCATCATTTTGTGGC
TGAAATGCTGTAACCCCCCTGGAATTCCAGCTAATTTCAGGCTTAAACCC
CTCTGGAATTCTGAATTTTAGTAAGATTTAAAAGGTTACCCCCATGGAAT
TCCAGTTATTTTTGACAGATTTTTGTATCTTCCTATGAAATTCTGCCACA
TATCAAACCTTACCCCCTTGGAACGGAAATGGACCTCCTCAACAGGGGGT
ATACGGTTTTTTTCTGGAAAAGCCCAATTTCTTTTACATAATTCTACTAA
AAATTTGAGACATCTAACCCTCGTTGGCGGATCTATGACGAGTTTCAAAA
AAAAGGTTTTTGCAGTTTTCAAAAGCTTTTGGTCTAAGTTTTCTAAAACA
GAATTTTGACTGGAAATGAGTTTTATTTTCGAGCTATAACTGTTGACATT
TTTGGACATACTTCTTCAATTAACGTGTTTTTTTTAGCGTAGCATGGTAG
GTCGTAGACTTCTGTTCATCCTCTAGCGAAAAGAGTTTCTTATAGGAAAT
ATATCTATAGAGGTCTGCGTTTCACTTCAGACTAGGTAGGTCGACAAAAA
TTTGGGCATCGAATATTTTGGTGCCCCCCTATCAAGAGAAATAGTTTTGA
AAAAAAAATTATGTGAGCGAAGTGAGTACGATACTTTTGGATATATTTCC
TCTTAATGGCTAAAACTTACCACCACGCTACAGACTACTAAAGATTAAAT
ATAAAGAAACAGTTAGGAGTTTTACCTGAAAACACATTTCAGAGACATCG
CAGTGTGCTTCATATTGTTGACTTGAGCAGGTGGTCATTGATTTCTGACT
GTAGCATTGTTGGCAACGTAAACCATCAACTGTGGAGAAGAAATTTCATT
AATTTTGAGTCACCGCATTACTTCGAATAAATACCCGTTGAAAATCTTCT
CTAAAGGAGGGGCATTATTCGACGAGGAGCTTCAAGGAAGAAGTAATCGA
AGTAACAGGTTACNCATTATTCGACGAGGCGCTTCAAGGAAGAAGTAATC
GAAGTACCAGGTTATTTGTTTGTGTTGAGTTTAAAAATCACTATCAAAAC
TTTACCTGTTTTGCTCAGTTCATAAATTTCACAATTATAACAAATTGCAC
AAAAGTTGGCTATATGGTGTCTTATGTAGCAACATTGGGGTTTTAATATG
ATAGAGACAATATAAATATCTAACGAGTAATGTATTCGATCAAAGTATTT
AAGAAAGTAAATCTTACCTTTATTTGAAAATGTCATAAAAACAAAAGTCA
GAAACAGGACAAAGTTTCTCATCTTGTTGATAATGGTAAAACTCAGTCGA
AATAAAATGTAAATCACACCATCATCGAAATTTTTGTTCTTGATAGCAAG
CATTTTGTTTTGTGGTTTCTCCTTTGATCCTTCGTTTTGATAAAAATTCT
TATTCGTATATAAGTCATATCTTAAAACGAGCAAGCTTCATGGGCATGAC
ATGCCCCTTATTTATGTAAGTCCTAAAATGTCATGATAAGTTCTTTTAAT
ATGATTGATACCCAGTGTTTTAGGTGCTTGAAAATAATGTTTTGGCATTT
CGGTGTTGCAAGACATTTCAAAGTTCAAAAGAATCATGGGTAATCGTGAA
TGACTCTTATGACTTCTTCCTTCTTCCCATTGGTTGGACGCAAAAAATCT
ACGCTATAAACCTAATGAACGCAGAAGAAAGTCGTTTTAGAGCGTGTTTT
GGTCGGTGTTAAGAACATCGGAACATCCGTGTATTTTTGCTGAAAGGTCA
GCGCGAAAAAATCTATATGCTTTGTATCTCAAAGAAAACCAAGTTTGACA
CTCAGGGTACCTGCACGGTGCAGATAGTTTAGACAACTCGGTAAGTTATG
GCATGTCTCAAAAACCTGAAAATTACGATAATTTTTGAAGACCATTAGCC
AGCAGAAAATGAGCAAACAAATGATTTACTACGAAGGATACCTAATTGTT
CACGCCCTCATTTTCGCGAAAAACCGCAAAAACTAAAAATTGCTGACGTC
AGCAAAACTTGTTTTTTGAATAACTCAAGTTTGGCTAAAGGTAAAAACAC
GAAAATTGAACTAAAGTTGCACATCATTAAAAGGATCATTTTGAAGAAAA
AAAATGTTTGAAATTTTGCTGACATCAACACTTTTTTGCAAGATTTCGTA
TTTTGCTGATTTCTGCTGACGACAGCAAAATTTTGAAAAATTTGAAATGT
TTTTTTTTGCAAAATTATCCTTTTAATGATAGGGGTGTGTTGGTTGCTGT
ACTTGTACTCTCCATACCATAATCCTCATAAGGGTTTCTGAGCTCAGCAC
ATCATACTTCTGATGTTATAATAACGGCATTTAACGAATGTGATGACGGT
AATGACCTTTGGTTCGAACAATGTTTATATCCCAGAAATGGATGAAAAAC
ATTAAAGTGGGAAACTTGAGTATGTAGAGTCTCTTTGACTCAAAGTTTGA
GCATGGAGGTAATAAAGATATAGATGGAGAGAAAACGTCTCGGTAATGAT
CTAAATGGTCGTTGAAATCTTTTATAAATCTACTCAAAGCGGCTTTTCTT
TGATGTACCATCATTGGAAGCAAAAAAGATCAATTTATAACTTTATAAGA
ACAAAAAGAGACTGTTTGGTTGATTTTGAAAAACANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCACTGGGCTTAATAATTTGATTTTAACTACACCTACGTTTTGGGGGCC
CCAAACCTCCGTTTTGACAACCAGGGGTATACTGTAAAAATTTTACCAAA
AAAATTTATGCCCAAAACCCTCTAAATCGCATTTCAAAACTATGGTCAAA
ATTTTGTATTCATATCTTAAAGATATCTCGAGAAATCGCTAAAATTGCAA
ACCTCCGTTTTGGGGGCCATTAAAAGAANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNAAAAAAAATTGTAAAACCTCTTTTCCTTCTAGATTTGAGAGAAATTT
CAAATTTGATCGACGTTTTGGGGGCCACATACTGTAGAGATAAATCAAAA
ATAAATCAAAAATAAATCATAAATAAATCATAAATCAAAAATAAATCAAA
AATAAATTATTTTATCGTCACATCGAGCCATTGCAGCTGTCTGTTTCACA
GCATTTGTACTAGAAAGAAAAAAATAAAATTGTTATATGCACAGATCTCT
ATTAAATACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032682XLOC_032682Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051620-exon-scaffold_202-1575043694:321210..321370TCONS_00051620-exon-scaffold_202-1575043694:321210..321370Clytia hemisphaericaexon
TCONS_00051620-exon-scaffold_202-1575043694:320212..321095TCONS_00051620-exon-scaffold_202-1575043694:320212..321095Clytia hemisphaericaexon
TCONS_00051620-exon-scaffold_202-1575043694:314610..314699TCONS_00051620-exon-scaffold_202-1575043694:314610..314699Clytia hemisphaericaexon
TCONS_00051620-exon-scaffold_202-1510915933:321210..321370TCONS_00051620-exon-scaffold_202-1510915933:321210..321370Clytia hemisphaericaexon
TCONS_00051620-exon-scaffold_202-1510915933:320212..321095TCONS_00051620-exon-scaffold_202-1510915933:320212..321095Clytia hemisphaericaexon
TCONS_00051620-exon-scaffold_202-1510915933:314610..314699TCONS_00051620-exon-scaffold_202-1510915933:314610..314699Clytia hemisphaericaexon
TCONS_00051620-exon-scaffold_202-1491911889:321210..321370TCONS_00051620-exon-scaffold_202-1491911889:321210..321370Clytia hemisphaericaexon
TCONS_00051620-exon-scaffold_202-1491911889:320212..321095TCONS_00051620-exon-scaffold_202-1491911889:320212..321095Clytia hemisphaericaexon
TCONS_00051620-exon-scaffold_202-1491911889:314610..314699TCONS_00051620-exon-scaffold_202-1491911889:314610..314699Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:314610..321370 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0383448	0.0747222	0.0453975	0.042515	0.25855	0.144155	0.133879	0	0	0	0	0	0	0	0	0	0.0763872	0	0	0	0.295028	0.92523	0.106708	0.0883413	0.104033	0.220645	0.367789	0.224439	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051620 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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