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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051573 ID=TCONS_00051573|Name=TCONS_00051573|organism=Clytia hemisphaerica|type=transcript|length=2268bp
ATTTTGTAATGAGGTGATTACGCTGTACCCGACTGAGTGGCCTGCGttca
ttgaaattttccttGTTCGTCTggaaaactttctttttatagGGGAAGTA
cagGTTGAAATGGCTGAAGAAGGAAAACCGCAAACAAAAAgacttgaaaa
tattgaaaataatggCTTTGGTCCATTGCCGAAAGCTCGTGGCATGCGTG
ATACTATCCTCTTCAGTTTACTAGTCCTTCTTGTGTATTTAAGCAGTGCT
GCAGTATACCGAAATTTTTACCAAGGAAAACGAGCTCTACTTTCACAAGA
TGTTGGAGATGCCTTTGTAATACTTTTTGGAATCTGTCTTGGGGAGTTGT
TGCGCTCAATTGTGCTTTACGGAGAGGAGAAGAATCACACAGTATCGCGA
TATTCAAACTCTCATTGGAGGGCTTTACAGGCTTGTGTTCCATACTCTTG
GAAGCAAATTTGTGTTTTCAAGattatttttttggTTATATCTTTTTGTG
GAACTGCTGTATACtggatttttgctgaaaaggtgtcGTTCAATGCATTC
CATTTGTTATCCATAACAGTTTTCAGTGCAATCAATCAAGTGGTTCTGTC
CAAAGCTGAAGTCTCCCATTTGAATGAAACTGAAAACAAACATGTTGCTG
ATGGCCTTGCATGGAGTTATTACTTTGGCTACCTCAAAATCATGTTGCCT
GGTATGAAAGGAATGTTGGCTTTAGCTCAAGGAGATGAGTACAAAATTGA
TGGCGAAGATATTCGTGATAAATTATCTTCAGAAAAGCTTCACATTGTGA
TTCCCAAAAATTGTTACACCTATGATTCTTTTAAAGAAGTAGATAAAAGA
ATCACTTTTAAATGCAGTATGCCACCAATCAAGAAAACCAGAGGAGGAGT
TCAAGAGCGTGTCTACAAGAATactgtttgggaggtaaaactTGAAGATG
ATGAAGAACCACTGTACGTGCTTATGGAATATGCCACACCTGTCCTATCC
ATGTATGAcatgaagaaagaagaaagtgCTCACTTCCATGGACAGGATCT
TGAAGACCAAGTTAAAGAATTTACAACCAAACTGCAGAAGATTTTggatg
aagatgaagaatgcAAAAATAAGTATGAAATTGTCTTATGCGGTGATGTC
AAATCCCAAAAACTCAGCGAGATCATGCGCAGAACCATtcaaaaggaaaa
ggaaaataaagaaaaggatAAAAACATATAAGCTAACATAATGGTagttt
tgaattgaaatatgaaatgaAGTTCCCAGGAAAAAAACCGATTCcacctt
tttttatttcagaagtGGTATATTTCCAATCACAGCTATTTTTGGACCCA
GGGATGTAATAGCGTTTGAGAATGTATATGCCGAACAGGCCACTGAACAC
TGAGCCAACTCTATAGAGAgatttgatttttgtgaaaaagtttacaaaat
cAACGAAAAAGTGTTCCTCAGAgatacaattttgaaaaaatttctaaccT
TAGAGACCTTAGAGAGATCTTTTCTTGGTttccaaaaaaggaaaaatccc
aaccttagagagacttgaattttttttctaaactccTAGTGATCGTCTGC
ACATACCCAGAActatttttgcctaaattcCTCTCCCCCGTTTTTCAGTA
ACTACTATGTTGTGAACAGTATTAAATCATTTAAGATAATAACCCACTGA
GAACTGTAGAATCTTTCCAATAAATGTGACATGAAGTCAGAAAACTGGAA
ACTTCTCAAAACTAAAGTTTGGATGGGCTATAACTATCATGACTATAGTT
TTGCGTTTTTGtgaattattaaaaaatattaaatttaagTTTTAGGGTAA
TTTGAAGGGCTAGTTTTTGTCTCGTTTGTATATACCCTTTTCAAGccatt
tttgtagattttctcaattttcCATACATCATCCCGAATCTTATTGTATA
ATTGAAAACTTTTgtctttaaattttatttttagtatCAATCTTTGTATG
GATTTATTAAACACAAAACTTATAAAAGCGACACCATTTTCACAAGTATT
TTTAACGATTATCAAGtatagaaaacaatttttaggataaaatataatgt
ttattgttgtttttgtaATGTTTTAATTCTTTTATTCCTTGTTAATGGAA
GAAATTTATTCCATAATCTTGTTGTAAAAGGTGAATGTATTAAAATAAGC
AGGTTATATTGTAAGAATTCTTTATTTGAAAGACACATATGATTGAAAAA
GTTGCGCTAATAGCTTTT Run BLAST on NCBI transcript from alignment at scaffold_202:1180556..1184920+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051573 ID=TCONS_00051573|Name=TCONS_00051573|organism=Clytia hemisphaerica|type=transcript|length=4365bp|location=Sequence derived from alignment at scaffold_202:1180556..1184920+ (Clytia hemisphaerica)
ATTTTGTAATGAGGTGATTACGCTGTACCCGACTGAGTGGCCTGCGttca
ttgaaattttccttGTTCGTCTggaaaactttctttttatagGGGAAGTA
caggtatttttttcatttctgtttATAAACACTGAAAGTTTGAGGGTGTT
AGGATCATCAGGTCTTGCAGTGCTTCCTTTCATATTGTATTGCGTTTTAT
ACAGTTTATTTCATTATTACATATTCGGATAATAAACTTCACCATTTTGA
ACATTTGAATATAACTAGGGAATCGAAAAGAATTATATTGAACTTCAATT
TGGAGGtaaaaatgtttatatttttaacaaATACCTAGATTTACTGTTTT
AATTACAGGGTGGCCAGAGCTCAGTCAGGGATATCCTTGCAATACTCCTT
TAGGAGAACGCAACAgtctatagaccttttttcaaagaggacgtcctgtt
gaataattatgtagtccagccataaaaacaatgatagtgtACTGTATcaa
gcatattgtaataattatgcatggttttatcattgtttttctgctggact
acataattattcaacagggtggcctctttgaaaaaaggtctctatcagga
ttagaaactaggctaggcTTATCTCTTTTATCTCTCCCtgccctttacaa
caatacaatgctgacaagttgacacaacacattgactaGTAATCCCTGta
gagagaagtttatattgaaatctgcgacaaaaaacgaaagtggtttcttc
tactgattgcttcctggCGCTCCTTCatagctgtttatcaaatttccacc
aatgagattgccaCATTTCACACGACCTTTCTATGTATTTTTGGAAGATA
GTATGTATTTTGAAAGATACCGGTAGTATTTTTGTTCACTGGAAAGTATT
CTTTCCataaaactaaaaatcttcaaattttgacaattttttatttttcg
atgacatcattgtttatgacgtcatttccttaatatctcctgacatattt
attttcagatataggttgtgacctttttttatcagtttttcatgctcttt
cgattgcaacaaaaacttttcaattttactactttttattttggttgcca
tagtaaccagtgacgtcagtttccatggcaacaggTGATCACACCCaacc
ccacctctcaaattttgatcttctacattcaaggaacaactTTTAGcact
taaatattttttgtagcttTAAAAACATGGCATAGCACAGTTGAGAGATA
AAGGTTGTCTGTCGACTTAAGACAAATTTACTATAAATAAGACTCAATAA
TTCCAAAAATAACACACAAATTTCTTTGACAATATGGAGGGCTCATGCAC
CAACAAAAAACATTCTAGAATTTTAGCACTAGAAAAAGGGCAAACTCAAA
CAAATAATGTATCTTGAAGCTAATCAATAACATCATAACCTGTCATCGCA
ATTAACAGAAGGTTTCTTTTGGTATTACTTATTGACTTTATTTTAACGCA
TGGTGTATTCTTATTTTGTTTGTAGGTTGAAATGGCTGAAGAAGGAAAAC
CGCAAACAAAAAgacttgaaaatattgaaaataatggCTTTGGTCCATTG
CCGAAAGCTCGTGGCATGCGTGATACTATCCTCTTCAGTTTACTAGTCCT
TCTTGTGTATTTAAGCAGTGCTGCAGTATACCGAAATTTTTACCAAGGAA
AACGAGCTCTACTTTCACAAGATGTTGGAGATGCCTTTGTAATACTTTTT
GGAATCTGTCTTGGGGAGTTGTTGCGCTCAATTGTGCTTTACGGAGAGGA
GAAGAATCACACAGTATCGCGATATTCAAACTCTCATTGGAGGGCTTTAC
AGGCTTGTGTTCCATACTCTTGGAAGCAAATTTGTGTTTTCAAGGTAAAA
TTGGTTTTTTAACATTATTGGAAGTAGTATGTTGAAGATGTCTGACTTTT
CTTAACTTACAGGGTTGATTACAAAAGacttctgaattttttttatcaac
atAGGGCTGATAAATTTTAAACTCCCTCCTCCCATGCTGTTATCAAACAA
GATTTTTCGAAACAAAGTTTTACCCTTTTTGGAAACAATTTTCCCAACCA
TGTCCATCAGCATCagaggaattttttattttttatttttttatcactgT
TTTTAAAGAGATTTAATCTGATTGATTTAAATTTTTNAGTATCGCGATAT
TCAAACTCTCATTGGAAGGCTTTACAGGCTTGTGTTCCATACTCTTGGAA
GCAAATTTGTGTTTTCAAGGTAAAATTGGTCTTTTAACATTATTGGAAAT
AGTATGTTGAAGATGTCTGACTTTTCTTAACTTACGGATTTGATTACAAa
agacttttgaattttttttatcaacatAGGGCTGATAAATTTTAAACTCC
CTCCTCCCATGCTGttatcaaacaaaatttttcgaaacaaAGTTTTACCC
TTTTTGGAAACAATTTTCCCAACCATGTCCATCAGCATCAgaggaatttt
tttattttttatttttttatcactgtttttaaagagatttaatctgatta
atttaaattttcattttagattatttttttggTTATATCTTTTTGTGGAA
CTGCTGTATACtggatttttgctgaaaaggtgtcGTTCAATGCATTCCAT
TTGTTATCCATAACAGTTTTCAGTGCAATCAATCAAGTGGTTCTGTCCAA
AGCTGAAGTCTCCCATTTGAATGAAACTGAAAACAAACATGTTGCTGATG
GCCTTGCATGGAGTTATTACTTTGGCTACCTCAAAATCATGTTGCCTGGT
ATGAAAGGAATGTTGGCTTTAGCTCAAGGAGATGAGTACAAAATTGATGG
CGAAGATATTCGTGATAAATTATCTTCAGAAAAGCTTCACATTGTGATTC
CCAAAAATTGTTACACCTATGATTCTTTTAAAGAAGTAGATAAAAGAATC
ACTTTTAAATGCAGTATGCCACCAATCAAGAAAACCAGAGGAGGAGTTCA
AGAGCGTGTCTACAAGAATactgtttgggaggtaaaactTGAAGATGATG
AAGAACCACTGTACGTGCTTATGGAATATGCCACACCTGTCCTATCCATG
TATGAcatgaagaaagaagaaagtgCTCACTTCCATGGACAGGATCTTGA
AGACCAAGTTAAAGAATTTACAACCAAACTGCAGAAGATTTTggatgaag
atgaagaatgcAAAAATAAGTATGAAATTGTCTTATGCGGTGATGTCAAA
TCCCAAAAACTCAGCGAGATCATGCGCAGAACCATtcaaaaggaaaagga
aaataaagaaaaggatAAAAACATATAAGCTAACATAATGGTagttttga
attgaaatatgaaatgaAGTTCCCAGGAAAAAAACCGATTCcaccttttt
ttatttcagaagtGGTATATTTCCAATCACAGCTATTTTTGGACCCAGGG
ATGTAATAGCGTTTGAGAATGTATATGCCGAACAGGCCACTGAACACTGA
GCCAACTCTATAGAGAgatttgatttttgtgaaaaagtttacaaaatcAA
CGAAAAAGTGTTCCTCAGAgatacaattttgaaaaaatttctaaccTTAG
AGACCTTAGAGAGATCTTTTCTTGGTttccaaaaaaggaaaaatcccaac
cttagagagacttgaattttttttctaaactccTAGTGATCGTCTGCACA
TACCCAGAActatttttgcctaaattcCTCTCCCCCGTTTTTCAGTAACT
ACTATGTTGTGAACAGTATTAAATCATTTAAGATAATAACCCACTGAGAA
CTGTAGAATCTTTCCAATAAATGTGACATGAAGTCAGAAAACTGGAAACT
TCTCAAAACTAAAGTTTGGATGGGCTATAACTATCATGACTATAGTTTTG
CGTTTTTGtgaattattaaaaaatattaaatttaagTTTTAGGGTAATTT
GAAGGGCTAGTTTTTGTCTCGTTTGTATATACCCTTTTCAAGccattttt
gtagattttctcaattttcCATACATCATCCCGAATCTTATTGTATAATT
GAAAACTTTTgtctttaaattttatttttagtatCAATCTTTGTATGGAT
TTATTAAACACAAAACTTATAAAAGCGACACCATTTTCACAAGTATTTTT
AACGATTATCAAGtatagaaaacaatttttaggataaaatataatgttta
ttgttgtttttgtaATGTTTTAATTCTTTTATTCCTTGTTAATGGAAGAA
ATTTATTCCATAATCTTGTTGTAAAAGGTGAATGTATTAAAATAAGCAGG
TTATATTGTAAGAATTCTTTATTTGAAAGACACATATGATTGAAAAAGTT
GCGCTAATAGCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051573-exon-scaffold_202-1491911889:1180556..1180658 | TCONS_00051573-exon-scaffold_202-1491911889:1180556..1180658 | Clytia hemisphaerica | exon |
| TCONS_00051573-exon-scaffold_202-1510915933:1180556..1180658 | TCONS_00051573-exon-scaffold_202-1510915933:1180556..1180658 | Clytia hemisphaerica | exon |
| TCONS_00051573-exon-scaffold_202-1575043694:1180556..1180658 | TCONS_00051573-exon-scaffold_202-1575043694:1180556..1180658 | Clytia hemisphaerica | exon |
| TCONS_00051573-exon-scaffold_202-1491911889:1182081..1182449 | TCONS_00051573-exon-scaffold_202-1491911889:1182081..1182449 | Clytia hemisphaerica | exon |
| TCONS_00051573-exon-scaffold_202-1510915933:1182081..1182449 | TCONS_00051573-exon-scaffold_202-1510915933:1182081..1182449 | Clytia hemisphaerica | exon |
| TCONS_00051573-exon-scaffold_202-1575043694:1182081..1182449 | TCONS_00051573-exon-scaffold_202-1575043694:1182081..1182449 | Clytia hemisphaerica | exon |
| TCONS_00051573-exon-scaffold_202-1491911889:1183125..1184920 | TCONS_00051573-exon-scaffold_202-1491911889:1183125..1184920 | Clytia hemisphaerica | exon |
| TCONS_00051573-exon-scaffold_202-1510915933:1183125..1184920 | TCONS_00051573-exon-scaffold_202-1510915933:1183125..1184920 | Clytia hemisphaerica | exon |
| TCONS_00051573-exon-scaffold_202-1575043694:1183125..1184920 | TCONS_00051573-exon-scaffold_202-1575043694:1183125..1184920 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:1180556..1184920 + |
Blast
BLAST of TCONS_00051573 vs. Swiss-Prot (Human)
Match: STING (Stimulator of interferon genes protein OS=Homo sapiens GN=TMEM173 PE=1 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 6.532e-30 Identity = 76/259 (29.34%), Postives = 131/259 (50.58%), Query Frame = 2
Query: 371 GEEKNHTVSRYSNSHWRALQACV--PYSWKQICVFKIIFL--VISFCGTAVYWIFAEKVSFNAFHLLSITVFSAINQVVLSKAEVSHLNETENKHVADGLAWSYYFGYLKIMLPGMKGMLALAQGDEYKIDGEDIRDKLSSEKLHIVIPKNCYTYDSFKEVDKRITFKCSMPPIKKTRGGVQERVYKNTVWEVKLEDDEEPLYVLMEYATPVLSMYDMKKEESAHFHGQDLEDQVKEFTTKLQKILDEDEECKNKYEIV 1135
EE H SRY S+WR ++AC+ P + + I F + + G W+ A A ++L + L+ AE+S + E N +VA GLAWSYY GYL+++LP ++ A+ Y ++ S++L+I++P +C D+ D I F +P G+++RVY N+++E+ LE+ + ++EYATP+ +++ M + A F +D +Q K F L+ IL + E +N ++
Sbjct: 67 AEELRHIHSRYRGSYWRTVRACLGCPLRRGALLLLSIYFYYSLPNAVGPPFTWMLALLGLSQALNIL-------LGLKGLAPAEISAVCEKGNFNVAHGLAWSYYIGYLRLILPELQ-----ARIRTYNQHYNNLLRGAVSQRLYILLPLDCGVPDNLSMADPNIRFLDKLPQQTGDHAGIKDRVYSNSIYEL-LENGQRAGTCVLEYATPLQTLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILADAPESQNNCRLI 312
The following BLAST results are available for this feature:
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