TCONS_00051565 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051565
Unique NameTCONS_00051565
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3698

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051565 ID=TCONS_00051565|Name=TCONS_00051565|organism=Clytia hemisphaerica|type=transcript|length=3698bp
AGTGAATTTATTTACGGTTCCGAAAGACATGTCAAGAGAAagtcgttctg
taaattactaatttgaaagatttttgcgtGCTAATAAAAATGGTAGCTAT
TTCCGAACTCATCACACATCTTTCAAGCTCTCTAGTATACGTGGGAGAAA
TAAGATCAAATATTAAGTTATTTTTGGAGTAATAACACAGAAGCGGTCAA
GTTATTCTGTATCACAATGCACAGACTGACAGATGGGTGCGGAAAAACAT
TGGTTGTAAACAACATCGATGGAAGTAAATCAAGTTTTGCCCACAATTTT
TATCAACGAAGATTAAAGGTTCACTCTCGACATCTTAAAGAGAAACCAGC
AAGTTAGCCAAACCCTGGCAAATCCGATCGATCAGCATGATCAAGATCCT
ACATATCAATTACTGCTACCAATGGACCAAAAATGGATTCCCTCGATCAA
AAGAGAAAACAAGAGACAAACAAGGAATTGCAAGCTAAGTATTTCTGATT
CTTCTTATTTTCGTTATATAACTGAGCGTTCTCTTGCATAGACAATATCA
ACAAAGTTTGTGTTAGGAGATATAGCTCTCTTGGAAAAACTCATAATAAC
AAAAACTCTACAgggaagatttttttttgtcatctaaATCAATCTCGAAT
GCCTTGTAGGAACTTATGTTCTTGCNTTAGGAGATATAGCTCTCTTGGAA
AAACTCATAATAACAAAAACTCTACAgggaagatttttttttgtcatcta
aATCAATCTCAAATGCCTTGTAGGAACTTATGTTCTTGCAGGAAATCAGT
CATCAGTGTTAAACTTAATGGGGATTTCTTTTATCAAAGTTGTTTTGCAT
TGTGACAAGGAAATATAATAGTGACATTTTAAATAATGATGTCAGAAATT
TATGGCCTCGTTAATAAGGAGATACAATTATTAGCAAACTGCTTTTACAC
TTCGAGCTTTTGAATTCAAATTAACAAAGGAACAGTGTGCTCTCTCGTAC
ATAGATAATATGGCATCACCAAGAATTGGTAAGGTAGAAGCAATAAGAAA
AGGTACAATATCTGGCAAACCTCGTTTACaagaaatataacttttgaGAA
TAACATGGATTGCTAGAAAGCTTAaaaggaatttaattttttttttcttc
atatttttggaaataccTAAATCACGTCATTTGTTtacagaaaatcaaat
ttattttaatgCAATGCGTACGTTGTTAGGGGAATAAGTCGAGCCGTCTG
TTTGACGTTAAAGTGTtcagaaagaaattggaaaaGTTCTTGCTTTTCTT
GATAGGAGTGTAGCCATAACTTTCTATCCATAAATGGTTTAACCAAGAGA
CAGATATcattaaaaagccatttttgaGGGAGCAAAACTATGTTTGAACT
TTCCCAAAGAAGTGAGTGAAAATGAGTTTAGagtcgatttaaaaaaaaaa
gaaaaaaaaaaaaaaaaattttaatggaATAGgctgaaaacctcaaattt
aGTCCACGAAAAACTGAACCCTTCCTGAAATCAAAAGTGATTTTacgatc
ttcaaaattttttctcgTTTGCGAAATATCAAGCTTTAAAGTCGATGTTT
TAAGGTTTATCAcagtttatcaagagttattgatttgattcttataaagt
aggtgCTTTTAATAAATCAGATATGCTGACATTGTGCACAattatttatt
aatttgatGTTCGATCACGTTAGTTTTTAGCGATATTCTTTACAATATTA
GAGAATGATTAAATGTTTATTACACCGTGTCAACCACTAAATTTTATTCC
GTACCGCCAAAGCCagtatcgtaatactttcgctaggcggcgaaattaaa
aatagaCAGATTGGACAAAAGTATATACCGAAGTAAACTCGTTGCCTTCT
AAAGAAAAGCATGTAACTTTCATTCTAATGTTTCAATTTGAATCTGGGAA
GTCCTTTCCGGTGTATGAAGCCTTACGAACTATTTATCATCCTATTTCGG
GTTACGCGATCGGGTCATTTTCAACTGTAAGGCACTATTCGAGGGTTTTT
TAATGCTCCCCGTCTTCTACCCCCAAAAGGATTAAGGGTTTAGAGgtgaa
gatttgaagaaaaattttttgaaaaattatcagTGTATATTCTCTAATAA
CCTAAatgccaaaagtttcaaagattttgcgtaaaatactttttttttct
tgattatttCCATTTTAATCTAAAGTGGTAGACGGATGTCTGACAGGGAA
GGCCATTAGGTAAATGTTGTAAGGATGTATTCTGATATCTGCCTGGTTAA
GGGGCTAGAAAGGAATCTCCAAATGGCAAAgatggaaattcttttttttt
tttctaatttttagaTGGACTACAAAATCAAAGCGTAATCAGATGTTAAG
ACGTTGAAAAATCGAAATCATACAGCTCCGTTAGAGACGACACAAAGAAA
GTGTTTGATAAAACGAGAAAAGGATGTGTTGTTCACAATTTGAGGTCAGG
TGGTGCTTCAGCTGCGGGTAATCCTGGAGTGTCGTNAagtcgttctgtaa
attactaatttgaaagatttttgcgtGCTAATAAAAATGGTAGCTATTTC
CGAACTCATCACACGTCTTTCAAGCTCTCTAGTATATTCTCTAGTATATT
TTATGCTGTGAGGGTGCAGcaagagtaatatattttatgctgTGAGGGTG
CAGCAAGAGTAATGTATTTTATGCCGTGAGGGTGCGGcaagagtaatata
ttttatgctgtgagggtgcagcaagagtaatatattttatgccgTGAGAG
TACGGcaagagtaatatattttatgccgTGAGGGTACGGCAAGAGTAATA
TNCGAGGCCCTTACGGTTTCCTCTACGACAGCCCAGCTAAAATTTGAGAC
AGCCTGGGCACCCAATTTTGACCACCGGGGTCTGGAGGTTTTTGTCCGGG
GGGACTTGATCAATCCGTTGTCTAAGTCAACAAGATAGCATGAAGATAAC
GGCTTCTATAAAAAAGCTCAAACTAAGTgaatttgatatgaaaattttaa
aagaagtgCCTAAGAGGACCTCAATTTTTTAATATCGGTTATTGCTGTAA
AGTAGGTGGTATTTATTCCATTTTGAAAGTAATATTTTAATTGGATTGAT
CCCACAGGGATTGGTAAAAGgaaagtagtttttttttttttttatcaaga
ggAAAGTAGGGTATTTTTTCTAAAGGAAAGTAGCGTTTTATATCAAAGGG
AAAGTAGTGTACTTTATCAAAATTAGGTTTATTTAGGACTTCAAGTATAT
TGACATTGATAACTGCTGTCTAACTTTTAtcgataacttcaattttgacG
GTAGGCAAAGTACCATTTTATTTCTCTATATCCCAGAGGAATTGGTGTAT
GAAAAGATGTATAATTTCGTAGAATTAGGTCGTTTTAGGACCTCGAGTAT
CGGTAATTATTGTAAAGAATATGGTGTTTATTTAAATTTGACAGTAGGCA
AAAGTAACATTTTATTTCAAAGGAAAGTAGTGTTTTTTATCAAGGTGTAT
AATTTCGTAGATTAAGTTTCGTAGAATAATTTTTCGTacagtatttattt
ttttatcgtaTTCCAGGTTGCCACGGGCCTTTTTCCCACGAGAGCCTTGA
AACGCCTAACTACTAAACTAAATAAAAGGGTACAAGCCTGTCTCAACA
Run BLAST on NCBI

transcript from alignment at scaffold_202:1102636..1106333+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051565 ID=TCONS_00051565|Name=TCONS_00051565|organism=Clytia hemisphaerica|type=transcript|length=3698bp|location=Sequence derived from alignment at scaffold_202:1102636..1106333+ (Clytia hemisphaerica)
AGTGAATTTATTTACGGTTCCGAAAGACATGTCAAGAGAAagtcgttctg
taaattactaatttgaaagatttttgcgtGCTAATAAAAATGGTAGCTAT
TTCCGAACTCATCACACATCTTTCAAGCTCTCTAGTATACGTGGGAGAAA
TAAGATCAAATATTAAGTTATTTTTGGAGTAATAACACAGAAGCGGTCAA
GTTATTCTGTATCACAATGCACAGACTGACAGATGGGTGCGGAAAAACAT
TGGTTGTAAACAACATCGATGGAAGTAAATCAAGTTTTGCCCACAATTTT
TATCAACGAAGATTAAAGGTTCACTCTCGACATCTTAAAGAGAAACCAGC
AAGTTAGCCAAACCCTGGCAAATCCGATCGATCAGCATGATCAAGATCCT
ACATATCAATTACTGCTACCAATGGACCAAAAATGGATTCCCTCGATCAA
AAGAGAAAACAAGAGACAAACAAGGAATTGCAAGCTAAGTATTTCTGATT
CTTCTTATTTTCGTTATATAACTGAGCGTTCTCTTGCATAGACAATATCA
ACAAAGTTTGTGTTAGGAGATATAGCTCTCTTGGAAAAACTCATAATAAC
AAAAACTCTACAgggaagatttttttttgtcatctaaATCAATCTCGAAT
GCCTTGTAGGAACTTATGTTCTTGCNTTAGGAGATATAGCTCTCTTGGAA
AAACTCATAATAACAAAAACTCTACAgggaagatttttttttgtcatcta
aATCAATCTCAAATGCCTTGTAGGAACTTATGTTCTTGCAGGAAATCAGT
CATCAGTGTTAAACTTAATGGGGATTTCTTTTATCAAAGTTGTTTTGCAT
TGTGACAAGGAAATATAATAGTGACATTTTAAATAATGATGTCAGAAATT
TATGGCCTCGTTAATAAGGAGATACAATTATTAGCAAACTGCTTTTACAC
TTCGAGCTTTTGAATTCAAATTAACAAAGGAACAGTGTGCTCTCTCGTAC
ATAGATAATATGGCATCACCAAGAATTGGTAAGGTAGAAGCAATAAGAAA
AGGTACAATATCTGGCAAACCTCGTTTACaagaaatataacttttgaGAA
TAACATGGATTGCTAGAAAGCTTAaaaggaatttaattttttttttcttc
atatttttggaaataccTAAATCACGTCATTTGTTtacagaaaatcaaat
ttattttaatgCAATGCGTACGTTGTTAGGGGAATAAGTCGAGCCGTCTG
TTTGACGTTAAAGTGTtcagaaagaaattggaaaaGTTCTTGCTTTTCTT
GATAGGAGTGTAGCCATAACTTTCTATCCATAAATGGTTTAACCAAGAGA
CAGATATcattaaaaagccatttttgaGGGAGCAAAACTATGTTTGAACT
TTCCCAAAGAAGTGAGTGAAAATGAGTTTAGagtcgatttaaaaaaaaaa
gaaaaaaaaaaaaaaaaattttaatggaATAGgctgaaaacctcaaattt
aGTCCACGAAAAACTGAACCCTTCCTGAAATCAAAAGTGATTTTacgatc
ttcaaaattttttctcgTTTGCGAAATATCAAGCTTTAAAGTCGATGTTT
TAAGGTTTATCAcagtttatcaagagttattgatttgattcttataaagt
aggtgCTTTTAATAAATCAGATATGCTGACATTGTGCACAattatttatt
aatttgatGTTCGATCACGTTAGTTTTTAGCGATATTCTTTACAATATTA
GAGAATGATTAAATGTTTATTACACCGTGTCAACCACTAAATTTTATTCC
GTACCGCCAAAGCCagtatcgtaatactttcgctaggcggcgaaattaaa
aatagaCAGATTGGACAAAAGTATATACCGAAGTAAACTCGTTGCCTTCT
AAAGAAAAGCATGTAACTTTCATTCTAATGTTTCAATTTGAATCTGGGAA
GTCCTTTCCGGTGTATGAAGCCTTACGAACTATTTATCATCCTATTTCGG
GTTACGCGATCGGGTCATTTTCAACTGTAAGGCACTATTCGAGGGTTTTT
TAATGCTCCCCGTCTTCTACCCCCAAAAGGATTAAGGGTTTAGAGgtgaa
gatttgaagaaaaattttttgaaaaattatcagTGTATATTCTCTAATAA
CCTAAatgccaaaagtttcaaagattttgcgtaaaatactttttttttct
tgattatttCCATTTTAATCTAAAGTGGTAGACGGATGTCTGACAGGGAA
GGCCATTAGGTAAATGTTGTAAGGATGTATTCTGATATCTGCCTGGTTAA
GGGGCTAGAAAGGAATCTCCAAATGGCAAAgatggaaattcttttttttt
tttctaatttttagaTGGACTACAAAATCAAAGCGTAATCAGATGTTAAG
ACGTTGAAAAATCGAAATCATACAGCTCCGTTAGAGACGACACAAAGAAA
GTGTTTGATAAAACGAGAAAAGGATGTGTTGTTCACAATTTGAGGTCAGG
TGGTGCTTCAGCTGCGGGTAATCCTGGAGTGTCGTNAagtcgttctgtaa
attactaatttgaaagatttttgcgtGCTAATAAAAATGGTAGCTATTTC
CGAACTCATCACACGTCTTTCAAGCTCTCTAGTATATTCTCTAGTATATT
TTATGCTGTGAGGGTGCAGcaagagtaatatattttatgctgTGAGGGTG
CAGCAAGAGTAATGTATTTTATGCCGTGAGGGTGCGGcaagagtaatata
ttttatgctgtgagggtgcagcaagagtaatatattttatgccgTGAGAG
TACGGcaagagtaatatattttatgccgTGAGGGTACGGCAAGAGTAATA
TNCGAGGCCCTTACGGTTTCCTCTACGACAGCCCAGCTAAAATTTGAGAC
AGCCTGGGCACCCAATTTTGACCACCGGGGTCTGGAGGTTTTTGTCCGGG
GGGACTTGATCAATCCGTTGTCTAAGTCAACAAGATAGCATGAAGATAAC
GGCTTCTATAAAAAAGCTCAAACTAAGTgaatttgatatgaaaattttaa
aagaagtgCCTAAGAGGACCTCAATTTTTTAATATCGGTTATTGCTGTAA
AGTAGGTGGTATTTATTCCATTTTGAAAGTAATATTTTAATTGGATTGAT
CCCACAGGGATTGGTAAAAGgaaagtagtttttttttttttttatcaaga
ggAAAGTAGGGTATTTTTTCTAAAGGAAAGTAGCGTTTTATATCAAAGGG
AAAGTAGTGTACTTTATCAAAATTAGGTTTATTTAGGACTTCAAGTATAT
TGACATTGATAACTGCTGTCTAACTTTTAtcgataacttcaattttgacG
GTAGGCAAAGTACCATTTTATTTCTCTATATCCCAGAGGAATTGGTGTAT
GAAAAGATGTATAATTTCGTAGAATTAGGTCGTTTTAGGACCTCGAGTAT
CGGTAATTATTGTAAAGAATATGGTGTTTATTTAAATTTGACAGTAGGCA
AAAGTAACATTTTATTTCAAAGGAAAGTAGTGTTTTTTATCAAGGTGTAT
AATTTCGTAGATTAAGTTTCGTAGAATAATTTTTCGTacagtatttattt
ttttatcgtaTTCCAGGTTGCCACGGGCCTTTTTCCCACGAGAGCCTTGA
AACGCCTAACTACTAAACTAAATAAAAGGGTACAAGCCTGTCTCAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032663XLOC_032663Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051565-exon-scaffold_202-1491911889:1102636..1106333TCONS_00051565-exon-scaffold_202-1491911889:1102636..1106333Clytia hemisphaericaexon
TCONS_00051565-exon-scaffold_202-1510915933:1102636..1106333TCONS_00051565-exon-scaffold_202-1510915933:1102636..1106333Clytia hemisphaericaexon
TCONS_00051565-exon-scaffold_202-1575043694:1102636..1106333TCONS_00051565-exon-scaffold_202-1575043694:1102636..1106333Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:1102636..1106333 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.1108	11.1949	5.60607	4.94215	0.776741	0.395803	1.81616	2.07717	1.48703	1.1596	2.28343	1.12864	1.13534	1.51856	4.53639	4.19015	2.66718	1.94148	0.43591	0.472403	0.670129	0.656939	5.39981	6.22798	1.47496	1.12524	1.01405	1.65605	29.6454	29.9433
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051565 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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