TCONS_00051546 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051546
Unique NameTCONS_00051546
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length254

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051546 ID=TCONS_00051546|Name=TCONS_00051546|organism=Clytia hemisphaerica|type=transcript|length=254bp
ttttttttgtacaGAAACTTGGTAATTGAATTAAAGTGGACATCTCTAAT
GCTAAAGATGGATTCACTTACTGCTACTGGCCAAAAGCTATCAGCTCATC
CCTTGTAGAAATGGATAAAGATTGACATCAATAAAGCAACAAAAGGTTTA
GGATGAATTTTACAGTTTAccttataatattattttgcCATTTGCCTCTT
ATTATTGGCCTTCAGAAACCAATTGAAGTAAAGGTTTGTTAATTCtaaca
tttt
Run BLAST on NCBI

transcript from alignment at scaffold_202:1036006..1036558+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051546 ID=TCONS_00051546|Name=TCONS_00051546|organism=Clytia hemisphaerica|type=transcript|length=553bp|location=Sequence derived from alignment at scaffold_202:1036006..1036558+ (Clytia hemisphaerica)
ttttttttgtacaGAAACTTGGTAATTGAATTAAAGTGGACATCTCTAAT
GCTAAAGATGGATTCACTTACTGCTACTGGCCAAAAGCTATCAGGTGCAA
ATTATTCTCGTGAGGACCCTGACTTAATTTCAGTCAAAATTTGTATTTCT
TCATTGAGAAATTGGTCAAACCAAGTATAGGTAACctttctttattcaaa
ttttactttctatgttatcaaaaatacataaaCATGCCAAGATTAATGTA
ATAGCTATACTTTATGCATGAAAAGGAATGATATTCCATTTTATAGATTA
TACATAGCCTTGCATTcaatttagaataaaaaaatatattattaaTGTGG
AGTAAGAAAGTGAATCaaacttcactttttttttctccttaAGCTCATCC
CTTGTAGAAATGGATAAAGATTGACATCAATAAAGCAACAAAAGGTTTAG
GATGAATTTTACAGTTTAccttataatattattttgcCATTTGCCTCTTA
TTATTGGCCTTCAGAAACCAATTGAAGTAAAGGTTTGTTAATTCtaacat
ttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032655XLOC_032655Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051546-exon-scaffold_202-1491911889:1036006..1036099TCONS_00051546-exon-scaffold_202-1491911889:1036006..1036099Clytia hemisphaericaexon
TCONS_00051546-exon-scaffold_202-1510915933:1036006..1036099TCONS_00051546-exon-scaffold_202-1510915933:1036006..1036099Clytia hemisphaericaexon
TCONS_00051546-exon-scaffold_202-1575043694:1036006..1036099TCONS_00051546-exon-scaffold_202-1575043694:1036006..1036099Clytia hemisphaericaexon
TCONS_00051546-exon-scaffold_202-1491911889:1036399..1036558TCONS_00051546-exon-scaffold_202-1491911889:1036399..1036558Clytia hemisphaericaexon
TCONS_00051546-exon-scaffold_202-1510915933:1036399..1036558TCONS_00051546-exon-scaffold_202-1510915933:1036399..1036558Clytia hemisphaericaexon
TCONS_00051546-exon-scaffold_202-1575043694:1036399..1036558TCONS_00051546-exon-scaffold_202-1575043694:1036399..1036558Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:1036006..1036558 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.268215	0	0	0	0	0	0.000174672	0.000170125	0	0	0	2.37141	0	0	0	3.44116	0	0	2.2256	0	0.583706	1.46856	0.728013	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051546 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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