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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051512 ID=TCONS_00051512|Name=TCONS_00051512|organism=Clytia hemisphaerica|type=transcript|length=1751bp
AGGCTGATAGCTGTCTCAGGTGGCtagcgcttttgattttagtatccccc
ggtaaaaaaaatttccacggCATGGCTATTAAAATATAGATTAAAGAAGC
CATTAAATCCTTGTCTTTTTCTGCGTGAGAAGTTAAATTTTCCTCAGAAT
CTATTAAATCAAAAAACCACAATGATTTTACAGATTGtatgtaaatatat
tttttctttttcagtttgtATCAAGTTCTTAACGAAATTCGAAAAATCCT
TATCAGATGATGACAGAAAAAGCCAAGATAAGCTGACAGATAAATTAAAG
AAAGCATGTGGGAAAGCCAAAAATAAAGATAACAGATTCTGTTACTACGT
TGGAGGAACGAAAGATGCAGCCACTTACATTCTCAAAGACATTACCAAAC
CTATTGGATTCTATAAACCAATATCTAGTATTTGTGAAGCACTAAAGAAG
AAAGATCCACAAACTTGTGAGTTGGCATATGAAAAAGAACTCGATTGGAA
AAATATTAACTTGAAGAAAATGAGAGTcaaacaattgaaaaatattttgg
caaattgGGATGAAACTTGCAGTGGATGTTTAGAAAAATCAGACTATATT
AAACGTATTGAGGAGGTCAAAAATCGACACGTTGAATTATAAGCTTCTAT
GAAGAACTTTTTGTAAACATCAACAAGACAAGTTAGAGAATCTTTTTCAT
GGAATGTTTTCACTAAAACAACATATTTATGTCCTCTTAAAGCTTTATTA
TACTGATAAATTCTTTGCCACCCAGGTTGTTTAccagaaaaaaacataaa
tggCTTTTAGGTTTGATTTGATTCGATTTGTTGAGTGTCAATAATTAAGA
AATACGTTAACAATTCTTTTTGAAgacattgtttttgtttttgtaataaA
GTTTAGTGATCAAAGATTCTTGTCAATTTTCAtaggttttttttcaattt
cactcTAGTGTTTTCAATTTAAACGTTTTTAATTGCCAGAGtgcatttaa
aaattaaatattgaaaaagatttttaaaattttgaaaaatttcggcAGGG
CTCTGCTTGGTTATAAAAGATATTgtttacacccccttctcgcagacccg
gtagaattttttcagccagtagggataaaaatcacggattgaaactcaat
gggattgatattcccatgttttttattgCTTTGGATTTGAATATCATAga
tttcaagtcagaaaattcaatggggatgTTCGCACAGTAGCAcagtattt
tgcagtgaggatttgtttatttggttattttcagtggggacaaaaattgg
agtgtaattttccactgaggacgatattttggccaattatCCCAGTGGAA
GGGATttctactgggtctgtgagaagggggtgtttgtcttattttattaa
tatctagaaatgttttggaaattttttataaactaTCTATCTGttgttat
atttaaaaaaactagatATTTTTTTCGGTTCAAGCAATGAAAAATTCTGA
CACTAATCAGAAACAAATACCTTGAACTTTGATTCTGAAGCCTGAAAATT
CTTTGAACTGAAACCTTAGAATTAAAGAATttgaatacacgggttgcagA
TATCAAATCACGCTTTagttttactcgaaatttttatgcgTTTGTTACAT
GACCTTCACTTCTGGTTGGCTGGAATTTATCAACACTAAtaaagtaacat
gggaataaaatcacttgaactttttcgagtaatcacgtgttttgactgca
c Run BLAST on NCBI protein sequence of TCONS_00051512-protein >TCONS_00051512-protein ID=TCONS_00051512-protein|Name=TCONS_00051512-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MILQIVCKYIFSFSVCIKFLTKFEKSLSDDDRKSQDKLTDKLKKACGKAK
NKDNRFCYYVGGTKDAATYILKDITKPIGFYKPISSICEALKKKDPQTCE
LAYEKELDWKNINLKKMRVKQLKNILANWDETCSGCLEKSDYIKRIEEVK
NRHVEL Run BLAST on NCBI transcript from alignment at scaffold_202:709316..711576+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051512 ID=TCONS_00051512|Name=TCONS_00051512|organism=Clytia hemisphaerica|type=transcript|length=2261bp|location=Sequence derived from alignment at scaffold_202:709316..711576+ (Clytia hemisphaerica)
AGGCTGATAGCTGTCTCAGGTGGCtagcgcttttgattttagtatccccc
ggtaaaaaaaatttccacggCATGGCTATTAAAATATAGATTAAAGAAGC
CATTAAATCCTTGTCTTTTTCTGCGTGAGAAGTTAAATTTTCCTCAGAAT
CTATTAAATCAAAAAACCACAATGATTTTACAGATTGtatgtaaatatat
tttttctttttcagtttgtATCAAGTTCTTAACGAAATTCGAAAAATCCT
TATCAGATGATGACAGAAAAAGCCAAGATAAGCTGACAGATAAATTAAAG
AAAGCATGTGGGAAAGCCAAAAATAAAGATAACAGATTCGTGAGTTAACT
TTACTTGGGTACTTTTCTTTGTCACCTAGGCCAGGGTGCTACTAGTGCTG
ATGGGAATGTCCTGCCCGACTTTCAAGCCtctgacccttagtgggactag
AATTGaggaaaaattttgtaaattttacaaCTCACTTTGGGAATAGTTTG
ttcaaatttagattttcaGGGGGCAACAAGTTGAAATGTTCCTATTTTTC
GACCCTTGGTGGCactgaaattaaattttctggtttttccaacccttaaa
GGGACTTCCAAGGCTCCTTAAAGGGTGGCACAAACCTATACCCTTCACTG
ACCTAGTCCCTCCTCCCCTGGGCATCTAGGTCAAGATTCGAGAGTAAGTC
TTAAACTATTTAACATCATTATTTCTAAGGTTTACCTAGTTCAATCTGTG
AAGATACTCGGATAGGGTGATAATATTTGTTGCATTTAGTGCATTGTAAT
TTTTAGTTATtagtatttttgttttgacgttTCTTTTTAAACTCTTTAGT
GTTACTACGTTGGAGGAACGAAAGATGCAGCCACTTACATTCTCAAAGAC
ATTACCAAACCTATTGGATTCTATAAACCAATATCTAGTATTTGTGAAGC
ACTAAAGAAGAAAGATCCACAAACTTGTGAGTTGGCATATGAAAAAGAAC
TCGATTGGAAAAATATTAACTTGAAGAAAATGAGAGTcaaacaattgaaa
aatattttggcaaattgGGATGAAACTTGCAGTGGATGTTTAGAAAAATC
AGACTATATTAAACGTATTGAGGAGGTCAAAAATCGACACGTTGAATTAT
AAGCTTCTATGAAGAACTTTTTGTAAACATCAACAAGACAAGTTAGAGAA
TCTTTTTCATGGAATGTTTTCACTAAAACAACATATTTATGTCCTCTTAA
AGCTTTATTATACTGATAAATTCTTTGCCACCCAGGTTGTTTAccagaaa
aaaacataaatggCTTTTAGGTTTGATTTGATTCGATTTGTTGAGTGTCA
ATAATTAAGAAATACGTTAACAATTCTTTTTGAAgacattgtttttgttt
ttgtaataaAGTTTAGTGATCAAAGATTCTTGTCAATTTTCAtaggtttt
ttttcaatttcactcTAGTGTTTTCAATTTAAACGTTTTTAATTGCCAGA
Gtgcatttaaaaattaaatattgaaaaagatttttaaaattttgaaaaat
ttcggcAGGGCTCTGCTTGGTTATAAAAGATATTgtttacacccccttct
cgcagacccggtagaattttttcagccagtagggataaaaatcacggatt
gaaactcaatgggattgatattcccatgttttttattgCTTTGGATTTGA
ATATCATAgatttcaagtcagaaaattcaatggggatgTTCGCACAGTAG
CAcagtattttgcagtgaggatttgtttatttggttattttcagtgggga
caaaaattggagtgtaattttccactgaggacgatattttggccaattat
CCCAGTGGAAGGGATttctactgggtctgtgagaagggggtgtttgtctt
attttattaatatctagaaatgttttggaaattttttataaactaTCTAT
CTGttgttatatttaaaaaaactagatATTTTTTTCGGTTCAAGCAATGA
AAAATTCTGACACTAATCAGAAACAAATACCTTGAACTTTGATTCTGAAG
CCTGAAAATTCTTTGAACTGAAACCTTAGAATTAAAGAATttgaatacac
gggttgcagATATCAAATCACGCTTTagttttactcgaaatttttatgcg
TTTGTTACATGACCTTCACTTCTGGTTGGCTGGAATTTATCAACACTAAt
aaagtaacatgggaataaaatcacttgaactttttcgagtaatcacgtgt
tttgactgcac Coding sequence (CDS) from alignment at scaffold_202:709316..711576+ >TCONS_00051512 ID=TCONS_00051512|Name=TCONS_00051512|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at scaffold_202:709316..711576+ (Clytia hemisphaerica)
ATGATTTTACAGATTGtatgtaaatatattttttctttttcagtttgtAT
CAAGTTCTTAACGAAATTCGAAAAATCCTTATCAGATGATGACAGAAAAA
GCCAAGATAAGCTGACAGATAAATTAAAGAAAGCATGTGGGAAAGCCAAA
AATAAAGATAACAGATTCTGTTACTACGTTGGAGGAACGAAAGATGCAGC
CACTTACATTCTCAAAGACATTACCAAACCTATTGGATTCTATAAACCAA
TATCTAGTATTTGTGAAGCACTAAAGAAGAAAGATCCACAAACTTGTGAG
TTGGCATATGAAAAAGAACTCGATTGGAAAAATATTAACTTGAAGAAAAT
GAGAGTcaaacaattgaaaaatattttggcaaattgGGATGAAACTTGCA
GTGGATGTTTAGAAAAATCAGACTATATTAAACGTATTGAGGAGGTCAAA
AATCGACACGTTGAATTATAAATGATTTTACAGATTGtatgtaaatatat
tttttctttttcagtttgtATCAAGTTCTTAACGAAATTCGAAAAATCCT
TATCAGATGATGACAGAAAAAGCCAAGATAAGCTGACAGATAAATTAAAG
AAAGCATGTGGGAAAGCCAAAAATAAAGATAACAGATTCTGTTACTACGT
TGGAGGAACGAAAGATGCAGCCACTTACATTCTCAAAGACATTACCAAAC
CTATTGGATTCTATAAACCAATATCTAGTATTTGTGAAGCACTAAAGAAG
AAAGATCCACAAACTTGTGAGTTGGCATATGAAAAAGAACTCGATTGGAA
AAATATTAACTTGAAGAAAATGAGAGTcaaacaattgaaaaatattttgg
caaattgGGATGAAACTTGCAGTGGATGTTTAGAAAAATCAGACTATATT
AAACGTATTGAGGAGGTCAAAAATCGACACGTTGAATTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051512-exon-scaffold_202-1491911889:709316..709654 | TCONS_00051512-exon-scaffold_202-1491911889:709316..709654 | Clytia hemisphaerica | exon |
| TCONS_00051512-exon-scaffold_202-1510915933:709316..709654 | TCONS_00051512-exon-scaffold_202-1510915933:709316..709654 | Clytia hemisphaerica | exon |
| TCONS_00051512-exon-scaffold_202-1575043694:709316..709654 | TCONS_00051512-exon-scaffold_202-1575043694:709316..709654 | Clytia hemisphaerica | exon |
| TCONS_00051512-exon-scaffold_202-1491911889:710165..711576 | TCONS_00051512-exon-scaffold_202-1491911889:710165..711576 | Clytia hemisphaerica | exon |
| TCONS_00051512-exon-scaffold_202-1510915933:710165..711576 | TCONS_00051512-exon-scaffold_202-1510915933:710165..711576 | Clytia hemisphaerica | exon |
| TCONS_00051512-exon-scaffold_202-1575043694:710165..711576 | TCONS_00051512-exon-scaffold_202-1575043694:710165..711576 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:709316..711576 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00051512 vs. Swiss-Prot (Human)
Match: MANF (Mesencephalic astrocyte-derived neurotrophic factor OS=Homo sapiens GN=MANF PE=1 SV=3) HSP 1 Score: 128.257 bits (321), Expect = 6.760e-34 Identity = 71/151 (47.02%), Postives = 102/151 (67.55%), Query Frame = 1
Query: 214 VCIKFLTKFEKSLSDDDRK-SQDKLTXXXXXXXXXXXXXXXRFCYYVGGTKDAATYILKDITKPIGFYKPISSICEALKKKDPQTCELAYEKELDWKNINLKKMRVKQLKNILANWDETCSGCLEKSDYIKRIEEVKNRHVEL*ASMKNFL 663
VCI +L +F + L D D S + ++L K C +A+ K+NR CYY+G T DAAT I+ +++KP+ + P+ ICE LKKKD Q CEL Y+K++D ++LKK+RVK+LK IL +W ETC GC EKSDYI++I E+ ++ AS + L
Sbjct: 32 VCISYLGRFYQDLKDRDVTFSPATIENELIKFCREARGKENRLCYYIGATDDAATKIINEVSKPLAHHIPVEKICEKLKKKDSQICELKYDKQIDLSTVDLKKLRVKELKKILDDWGETCKGCAEKSDYIRKINELMPKYAPKAASARTDL 182
The following BLAST results are available for this feature:
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