TCONS_00051490 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051490
Unique NameTCONS_00051490
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2444

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051490 ID=TCONS_00051490|Name=TCONS_00051490|organism=Clytia hemisphaerica|type=transcript|length=2444bp
cttccacgctattggtcaaaagaaaaatgaagcaactccattggcgcgat
ctgacgtaacggttgaaaaaagttgaaatgtgttcaacttttttttcgtg
cgcgcgctacatttttatgacgtaatcttttttccaaccaaaaaggattg
aagccaaaaagtgcgattgcagcgcgcgcaagtggagaccggcctttaga
gcccgaaaacctgggctcaaaacattcgaaaaagtcgcaaagtggaatag
acgttaattgcgtaaaaaaacgcgggtgacgtttAGTATAGGCTAAAGGA
GATCAAACTTGATTAAATCATttgtttggaaaatattttgcgAAACAAGT
TTCTAATAATATTTACATAGTGTTTTGAACTCTCTGAAAAATGTACattt
aatttttgcaaaatattctGTTATACAGAAAAATTATTACGCCACACACT
TTAATTTCCAAACACTAGAAAacttgggacaagctggagtttttacaagc
tcttatttgatttggttggtcgttaagatgtaatcaaagaatcttattac
tttttctaaagaacgcgtcatctctatcactttaaatgaccaattagtga
agtatcttgtaaaaactcaaaGGCATTTCGAAAACTTCCAGATtcatcac
gaacatcacttgcatCGTATtctaacaattaccatggtgattaagTCCCT
TGAGACGTTAAATGATTTTtatatgaatagaaagtagttttaataaaatc
ggCTGAGAATTAATCATCatggcaagtgatgttcgtaacgttaTTTACGC
TATGGGCAGTAGACGTGATGATTCAAAAATGTCCTTGGTCCGAAAATTTA
AAGCGTGCTGTTCAGGTTAGACTACCCAACCAAGACTTCTATTAAAAGTG
TGTCTTAATTTTGGGAATTAACCCTTAATAACATTAGAGTACCataaatt
agataaaaaatctgaaCTATAATATCATGTGTGTGAAAAAATTACGATCC
CCAAAAAATACTTTCTAAAAGTGTTTTTTCATAATAGAAATAGGGTGAAT
TCTTAGGTGCATAATGCCGATTAAATAAAAAATGGAACATCGGTATTTTC
ATAGACTAGTAGTTACCAAAAGGAACACTTAGCCTTCGCGATCCAGCGCG
AATGAGATAAAGTTTTCCGCTAGTCTATGGCTAAATtacaatgtttccaa
tttttacaCATATTATTCatctcaaaaatttgaaatacacGCGCTAATAT
TACTAAAAATGTAATACCAAAAATATTCCCTGCCCGAACAGGGAGCTTTT
Ttcaatacaaggaaaaaatcaaaacaaaatcgcaaaaacaaaatacaaac
gAACTTGTCTCGACCTGCTGGTTGCAGGTGGGGCTAAAATCAATGAAGAT
GAAATTTAATATTAGTAAACTGAAAAAAGGAATCTCAAACGAATTGCAAA
CAAAGAAACGGccaaaaaatagagaaaattaaataaaaaataagaagaTA
TGCTATAGAACTTCGACATTCTGTTGACCCAGGGCATCAACATCTTTAAA
AGAAGATATACTTTCAGAAGACGAGCTAACACCAGACTCAATGCCACTAG
ACTCTTCCCTTGCATTGGGGTTAGACTGTGACGTCAAACGTTTTCGTTTC
TGTAAACTACTCGGTTGGTTGCTATTGACACTCGAATCATCAACACTGAG
CGAATGTTTATGATGATACCTAATACCAGATTCTTTCCGTTTGTCACGTG
TGACGTCTATTGTGACATAAGGGCGGCCACGACTCTCACGCAGCAACGAT
TGCTCACATAAAGATGACCCACTTTTATAGTGAACCAGTACTCCAGAATC
ATGCTGATCTGAGCTCTCTTCGTCTGTCATGTAATCATTGtctatttgag
atttttgaagCTGAGACGTCGTCACCTTACCTAAAGGCGGAGCATCAGTT
TGCTCCCTTAAGTAACGTAGCGTGTCTCGCATCAATAGGTTCGCTTCCGG
ACAATCATCTATTTGTGTGTCGTCTTCGAAAGCGATACCACTTCGTCTCA
TTGAATGTTCTAGAAGTGGTTCTGAATCTGATAACCTTTGTACCGTATCT
ATAGCAGGTGTAAGTACGGGAGGCGTCGGTGATATCAGTTTACCGTTGCA
CCGTAATAAATAGTCTTTCGGTAGTTCAGGAACGAGACCTTCTTTGTACT
GTGATAAATGAGCATGATCGTCTGTAGGCGCGCGAGATATTTCGCGTTCT
TGTTTCCGTTTCCGTCGGCAATAACAAAACATCacgttcattgaaattgt
taatCACCATCATTTGGTTGGAGAGAGTAATCGATTTGGAAGGTCGAAGC
ATATGGTTGTCTTTGAACCATTGAATGTGTGGACGGGGATTTCCGGAAAT
GATACAGTCCAGTACGGCAACAGTTCCGGGCGGTACTCGTTTGC
Run BLAST on NCBI

transcript from alignment at scaffold_202:240402..243012+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051490 ID=TCONS_00051490|Name=TCONS_00051490|organism=Clytia hemisphaerica|type=transcript|length=2611bp|location=Sequence derived from alignment at scaffold_202:240402..243012+ (Clytia hemisphaerica)
cttccacgctattggtcaaaagaaaaatgaagcaactccattggcgcgat
ctgacgtaacggttgaaaaaagttgaaatgtgttcaacttttttttcgtg
cgcgcgctacatttttatgacgtaatcttttttccaaccaaaaaggattg
aagccaaaaagtgcgattgcagcgcgcgcaagtggagaccggcctttaga
gcccgaaaacctgggctcaaaacattcgaaaaagtcgcaaagtggaatag
acgttaattgcgtaaaaaaacgcgggtgacgtttAGTATAGGCTAAAGGA
GATCAAACTTGATTAAATCATttgtttggaaaatattttgcgAAACAAGT
TTCTAATAATATTTACATAGTGTTTTGAACTCTCTGAAAAATGTACattt
aatttttgcaaaatattctGTTATACAGAAAAATTATTACGCCACACACT
TTAATTTCCAAACACTAGAAAacttgggacaagctggagtttttacaagc
tcttatttgatttggttggtcgttaagatgtaatcaaagaatcttattac
tttttctaaagaacgcgtcatctctatcactttaaatgaccaattagtga
agtatcttgtaaaaactcaaaGGCATTTCGAAAACTTCCAGATtcatcac
gaacatcacttgcatCGTATtctaacaattaccatggtgattaagTCCCT
TGAGACGTTAAATGATTTTtatatgaatagaaagtagttttaataaaatc
ggCTGAGAATTAATCATCatggcaagtgatgttcgtaacgttaTTTACGC
TATGGGCAGTAGACGTGATGATTCAAAAATGTCCTTGGTCCGAAAATTTA
AAGCGTGCTGTTCAGGTTAGACTACCCAACCAAGACTTCTATTAAAAGTG
TGTCTTAATTTTGGGAATTAACCCTTAATAACATTAGAGTACCataaatt
agataaaaaatctgaaCTATAATATCATGTGTGTGAAAAAATTACGATCC
CCAAAAAATACTTTCTAAAAGTGTTTTTTCATAATAGAAATAGGGTGAAT
TCTTAGGTGCATAATGCCGATTAAATAAAAAATGGAACATCGGTATTTTC
ATAGACTAGTAGTTACCAAAAGGAACACTTAGCCTTCGCGATCCAGCGCG
AATGAGATAAAGTTTTCCGCTAGTCTATGGCTAAATtacaatgtttccaa
tttttacaCATATTATTCatctcaaaaatttgaaatacacGCGCTAATAT
TACTAAAAATGTAATACCAAAAATATTCCCTGCCCGAACAGGGAGCTTTT
Ttcaatacaaggaaaaaatcaaaacaaaatcgcaaaaacaaaatacaaac
gAACTTGTCTCGACCTGCTGGTTGCAGGTGGGGCTAAAATCAATGAAGAT
GAAATTTAATATTAGTAAACTGAAAAAAGGAATCTCAAACGAATTGCAAA
CAAAGAAACGGccaaaaaatagagaaaattaaataaaaaataagaagaTA
TGCTATAGAACTTCGACATTCTGTTGACCCAGGGCATCAACATCTTTAAA
AGAAGATATACTTTCAGAAGACGAGCTAACACCAGACTCAATGCCACTAG
ACTCTTCCCTTGCATTGGGGTTAGACTGTGACGTCAAACGTTTTCGTTTC
TGTAAACTACTCGGTTGGTTGCTATTGACACTCGAATCATCAACACTGAG
CGAATGTTTATGATGATACCTAATACCAGATTCTTTCCGTTTGTCACGTG
TGACGTCTATTGTGACATAAGGGCGGCCACGACTCTCACGCAGCAACGAT
TGCTCACATAAAGATGACCCACTTTTATAGTGAACCAGTACTCCAGAATC
ATGCTGATCTGAGCTCTCTTCGTCTGTCATGTAATCATTGtctatttgag
atttttgaagCTGAGACGTCGTCACCTTACCTAAAGGCGGAGCATCAGTT
TGCTCCCTTAAGTAACGTAGCGTGTCTCGCATCAATAGGTTCGCTTCCGG
ACAATCATCTATTTGTGTGTCGTCTTCGAAAGCGATACCACTTCGTCTCA
TTGAATGTTCTAGAAGTGGTTCTGAATCTGATAACCTTTGTACCGTATCT
ATAGCAGGTGTAAGTACGGGAGGCGTCGGTGATATCAGTTTACCGTTGCA
CCGTAATAAATAGTCTTTCGGTAGTTCAGGAACGAGACCTTCTTTGTACT
GTGATAAATGAGCATGATCGTCTGTAGGCGCGCGAGATATTTCGCGTTCT
TGTTTCCGTTTCCGTCGGCAATAACAAAACATCATGAACCATATGAAAGA
AGTTACTGTGAACACAATAATAACCGTCATAGCTATAATGGCAACGTTCG
GAGTAGCCTGTTCTCGTTCCGTTTGACTTAATTCTAGTCTAGCTGATTGA
GAAGCAGAGCCGAGATCATTGGATGCGTGGCATGAATAAGAACCGACATC
acgttcattgaaattgttaatCACCATCATTTGGTTGGAGAGAGTAATCG
ATTTGGAAGGTCGAAGCATATGGTTGTCTTTGAACCATTGAATGTGTGGA
CGGGGATTTCCGGAAATGATACAGTCCAGTACGGCAACAGTTCCGGGCGG
TACTCGTTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032639XLOC_032639Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051490-exon-scaffold_202-1491911889:240402..242681TCONS_00051490-exon-scaffold_202-1491911889:240402..242681Clytia hemisphaericaexon
TCONS_00051490-exon-scaffold_202-1510915933:240402..242681TCONS_00051490-exon-scaffold_202-1510915933:240402..242681Clytia hemisphaericaexon
TCONS_00051490-exon-scaffold_202-1575043694:240402..242681TCONS_00051490-exon-scaffold_202-1575043694:240402..242681Clytia hemisphaericaexon
TCONS_00051490-exon-scaffold_202-1491911889:242849..243012TCONS_00051490-exon-scaffold_202-1491911889:242849..243012Clytia hemisphaericaexon
TCONS_00051490-exon-scaffold_202-1510915933:242849..243012TCONS_00051490-exon-scaffold_202-1510915933:242849..243012Clytia hemisphaericaexon
TCONS_00051490-exon-scaffold_202-1575043694:242849..243012TCONS_00051490-exon-scaffold_202-1575043694:242849..243012Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:240402..243012 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.148222	0.364774	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.594588	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051490 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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