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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051482 ID=TCONS_00051482|Name=TCONS_00051482|organism=Clytia hemisphaerica|type=transcript|length=1433bp
gatgaattaTCAAAGATATTTTCTAACCTCGAACCAACGTATCATATCTA
CAAGCTTGACAAAAGATCAGGTTATAAGTCTTGGCCAATCAAGCAAACTG
CTGAGTTAAGGTCTACAACtggaaaatcaaaatgttaCCAAGGTGTTTTG
GTAATTTCTAGTAACCCAAATCTAGCTAAATCGAATTTACCACAGGAAGC
CCCAACCATTTTGAATCTACCAAAACCAACACCTAAATCGAATTTACCAC
AGGAAGCCCCAACCATTTTGAATCTACCAAAACCAACACCTAAATCGAAT
TTACCACAGAAAGCCCCAACCATTTTGAATCTACCAAAACCAACACCTAA
ATCGAATTTACCACAGGAAGCCCCAACCATTTTGAATCTACCAAAACCAA
CACCTAAATCGAATTTACCACAGAAAGCCCCAACCATTTTGAATCTACCA
AAACCAACACCTAAATCGAATTTACCACAGGAAGCCCCAACCATTTTGAA
TCTACCAAAACCAACACCTAAATCGAATTTACCACAGAAAGCCCCAACCA
TTTTGAATCTACCAAAACCAACACCTAAATCGAATTTACCACAGGAAGCC
CCAACCATTTTGAATCTACCAAAACCAACACCTAAATCGAATTTACCACA
GAAAGCCCCAACCATTTTGAATCTACCAAAACCAACACCTAAATCGAATT
TACCACAGGAAGCCCCAACCATTTTGAATCTACCAAAACCAACACCTAAA
TCGAATTTACCACAGAAAGCCCCAACCATTTTGAATCTACCAAAACCAAC
ACCTAAATCGAATTTACCacagaatacaatccataaagCTTCAGCTTTCA
AAATCAAACCGAAAACAGACACTGTTCACACGCTTTTCAATGTTTCGCTT
GAAAATCATAATGCAAACAACTTGCCTTTAATACCAGAAACACTGATCGA
CGACAACGACAACGATGACGAAAGAAGACAGATCCTAGAAAAACTCGGTT
TATGTAATTTCACATGCCATGATATGGAAGCATTCGTGAAAAGGAACAAC
CTCTCTGTAGGTTGTCTGGAGGTGGAGCCGGATATAATCCGTATGGAAAT
GATtctggcaaaatttccgggtCTGTTTACCGAACGGCCAATTTCGCCTT
TTGCCGTAAGACCTAATGTCACTGCTCAACGGATACGATCCTTGTGGGAT
AAAGCCGAAGAGTTGCCCGAGGTTTACTCCAACTTCCAAGAGCAGAACCA
AGTGGATATCGACGACTTGGATCAAATGCTAATATACGAGGTTAGCAGCA
AAGAGGATTTTTTGCTTTTCACTGCCATCATGAGGACATATAATTTGACT
CTAAGAGTGCAAATGGACAATGAGGTGACACCGGtggattttgaaaacga
atGATCCATGGTACTCtcaggttccaaataaac Run BLAST on NCBI protein sequence of TCONS_00051482-protein >TCONS_00051482-protein ID=TCONS_00051482-protein|Name=TCONS_00051482-protein|organism=Clytia hemisphaerica|type=polypeptide|length=467bp
DELSKIFSNLEPTYHIYKLDKRSGYKSWPIKQTAELRSTTGKSKCYQGVL
VISSNPNLAKSNLPQEAPTILNLPKPTPKSNLPQEAPTILNLPKPTPKSN
LPQKAPTILNLPKPTPKSNLPQEAPTILNLPKPTPKSNLPQKAPTILNLP
KPTPKSNLPQEAPTILNLPKPTPKSNLPQKAPTILNLPKPTPKSNLPQEA
PTILNLPKPTPKSNLPQKAPTILNLPKPTPKSNLPQEAPTILNLPKPTPK
SNLPQKAPTILNLPKPTPKSNLPQNTIHKASAFKIKPKTDTVHTLFNVSL
ENHNANNLPLIPETLIDDNDNDDERRQILEKLGLCNFTCHDMEAFVKRNN
LSVGCLEVEPDIIRMEMILAKFPGLFTERPISPFAVRPNVTAQRIRSLWD
KAEELPEVYSNFQEQNQVDIDDLDQMLIYEVSSKEDFLLFTAIMRTYNLT
LRVQMDNEVTPVDFENE Run BLAST on NCBI transcript from alignment at scaffold_202:55761..57826+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051482 ID=TCONS_00051482|Name=TCONS_00051482|organism=Clytia hemisphaerica|type=transcript|length=2066bp|location=Sequence derived from alignment at scaffold_202:55761..57826+ (Clytia hemisphaerica)
gatgaattaTCAAAGATATTTTCTAACCTCGAACCAACGTATCATATCTA
CAAGCTTGACAAAAGATCAGGTTATAAGTCTTGGCCAATCAAGCAAACTG
CTGAGTTAAGGTCTACAACtggaaaatcaaaatgttaCCAAGGTGTTTTG
GTAATTTCTAGTAACCCAAATCTAGCTAAATCGAATTTACCACAGGAAGC
CCCAACCATTTTGAATCTACCAAAACCAACACCTAAATCGAATTTACCAC
AGGAAGCCCCAACCATTTTGAATCTACCAAAACCAACACCTAAATCGAAT
TTACCACAGAAAGCCCCAACCATTTTGAATCTACCAAAACCAACACCTAA
ATCGAATTTACCACAGGAAGCCCCAACCATTTTGAATCTACCAAAACCAA
CACCTAAATCGAATTTACCACAGAAAGCCCCAACCATTTTGAATCTACCA
AAACCAACACCTAAATCGAATTTACCACAGGAAGCCCCAACCATTTTGAA
TCTACCAAAACCAACACCTAAATCGAATTTACCACAGAAAGCCCCAACCA
TTTTGAATCTACCAAAACCAACACCTAAATCGAATTTACCACAGGAAGCC
CCAACCATTTTGAATCTACCAAAACCAACACCTAAATCGAATTTACCACA
GAAAGCCCCAACCATTTTGAATCTACCAAAACCAACACCTAAATCGAATT
TACCACAGGAAGCCCCAACCATTTTGAATCTACCAAAACCAACACCTAAA
TCGAATTTACCACAGAAAGCCCCAACCATTTTGAATCTACCAAAACCAAC
ACCTAAATCGAATTTACCacagaatacaatccataaagCTTCAGCTTTCA
AAATCAAACCGAAAACAGACACTGTTCACACGCTTTTCAATGTTTCGCTT
GAAAATCATAATGCAAACAACTTGCCTTTAATACCAGGTAATGAATTTTT
GTTCTTTGAATAACTTACAGATATCACTTTACCAGTAGCTTTATCAATTC
CTTTTATGTCGAGGGAGTCACCCATCGATTGCACTGTAATAAGCAGAGGT
TTGATGTTTAATTGACAGACCTAACCATTCTATTCGCAGTAAtgcttttg
aaaagaaaatcaatctaATTATAATTATTGCTAGTTTCCAAACTTTCCCT
ATaaagtattaaaaagccttatcACGAAGCATTATAATCTTTActgggtg
gcagttagtgaaagctatgactagtattataaaaaattatcgGCACCTCA
ACACTTaagatttataaaaactaaAGCCTTATATATCTTGTTTTGATAAC
CTTTCTTTCGCTCTTTTATGACCTAGTGTCTCTAgaacaattcaaaaatt
gtgatGTTAGAACTTCTCTCTTCTACAGAAACACTGATCGACGACAACGA
CAACGATGACGAAAGAAGACAGATCCTAGAAAAACTCGGTTTATGTAATT
GTGagtacagaatttcaaaaatatattttaaaggaCTCTTgatcttttct
tttgttattcctgttatacttgatttacttgaagacctttttaaagtttt
tattttcaattctgtgtcatttcagaaaaatttaatttaatgcCATTAAT
TTAATGGAACTCTCTGAAAATTCACCTTCACTCATTTTATAGTCACATGC
CATGATATGGAAGCATTCGTGAAAAGGAACAACCTCTCTGTAGGTTGTCT
GGAGGTGGAGCCGGATATAATCCGTATGGAAATGATtctggcaaaatttc
cgggtCTGTTTACCGAACGGCCAATTTCGCCTTTTGCCGTAAGACCTAAT
GTCACTGCTCAACGGATACGATCCTTGTGGGATAAAGCCGAAGAGTTGCC
CGAGGTTTACTCCAACTTCCAAGAGCAGAACCAAGTGGATATCGACGACT
TGGATCAAATGCTAATATACGAGGTTAGCAGCAAAGAGGATTTTTTGCTT
TTCACTGCCATCATGAGGACATATAATTTGACTCTAAGAGTGCAAATGGA
CAATGAGGTGACACCGGtggattttgaaaacgaatGATCCATGGTACTCt
caggttccaaataaac Coding sequence (CDS) from alignment at scaffold_202:55761..57826+ >TCONS_00051482 ID=TCONS_00051482|Name=TCONS_00051482|organism=Clytia hemisphaerica|type=CDS|length=4212bp|location=Sequence derived from alignment at scaffold_202:55761..57826+ (Clytia hemisphaerica)
gatgaattaTCAAAGATATTTTCTAACCTCGAACCAACGTATCATATCTA
CAAGCTTGACAAAAGATCAGGTTATAAGTCTTGGCCAATCAAGCAAACTG
CTGAGTTAAGGTCTACAACtggaaaatcaaaatgttaCCAAGGTGTTTTG
GTAATTTCTAGTAACCCAAATCTAGCTAAATCGAATTTACCACAGGAAGC
CCCAACCATTTTGAATCTACCAAAACCAACACCTAAATCGAATTTACCAC
AGGAAGCCCCAACCATTTTGAATCTACCAAAACCAACACCTAAATCGAAT
TTACCACAGAAAGCCCCAACCATTTTGAATCTACCAAAACCAACACCTAA
ATCGAATTTACCACAGGAAGCCCCAACCATTTTGAATCTACCAAAACCAA
CACCTAAATCGAATTTACCACAGAAAGCCCCAACCATTTTGAATCTACCA
AAACCAACACCTAAATCGAATTTACCACAGGAAGCCCCAACCATTTTGAA
TCTACCAAAACCAACACCTAAATCGAATTTACCACAGAAAGCCCCAACCA
TTTTGAATCTACCAAAACCAACACCTAAATCGAATTTACCACAGGAAGCC
CCAACCATTTTGAATCTACCAAAACCAACACCTAAATCGAATTTACCACA
GAAAGCCCCAACCATTTTGAATCTACCAAAACCAACACCTAAATCGAATT
TACCACAGGAAGCCCCAACCATTTTGAATCTACCAAAACCAACACCTAAA
TCGAATTTACCACAGAAAGCCCCAACCATTTTGAATCTACCAAAACCAAC
ACCTAAATCGAATTTACCacagaatacaatccataaagCTTCAGCTTTCA
AAATCAAACCGAAAACAGACACTGTTCACACGCTTTTCAATGTTTCGCTT
GAAAATCATAATGCAAACAACTTGCCTTTAATACCAGAAACACTGATCGA
CGACAACGACAACGATGACGAAAGAAGACAGATCCTAGAAAAACTCGGTT
TATGTAATTTCACATGCCATGATATGGAAGCATTCGTGAAAAGGAACAAC
CTCTCTGTAGGTTGTCTGGAGGTGGAGCCGGATATAATCCGTATGGAAAT
GATtctggcaaaatttccgggtCTGTTTACCGAACGGCCAATTTCGCCTT
TTGCCGTAAGACCTAATGTCACTGCTCAACGGATACGATCCTTGTGGGAT
AAAGCCGAAGAGTTGCCCGAGGTTTACTCCAACTTCCAAGAGCAGAACCA
AGTGGATATCGACGACTTGGATCAAATGCTAATATACGAGGTTAGCAGCA
AAGAGGATTTTTTGCTTTTCACTGCCATCATGAGGACATATAATTTGACT
CTAAGAGTGCAAATGGACAATGAGGTGACACCGGtggattttgaaaacga
atGAgatgaattaTCAAAGATATTTTCTAACCTCGAACCAACGTATCATA
TCTACAAGCTTGACAAAAGATCAGGTTATAAGTCTTGGCCAATCAAGCAA
ACTGCTGAGTTAAGGTCTACAACtggaaaatcaaaatgttaCCAAGGTGT
TTTGGTAATTTCTAGTAACCCAAATCTAGCTAAATCGAATTTACCACAGG
AAGCCCCAACCATTTTGAATCTACCAAAACCAACACCTAAATCGAATTTA
CCACAGGAAGCCCCAACCATTTTGAATCTACCAAAACCAACACCTAAATC
GAATTTACCACAGAAAGCCCCAACCATTTTGAATCTACCAAAACCAACAC
CTAAATCGAATTTACCACAGGAAGCCCCAACCATTTTGAATCTACCAAAA
CCAACACCTAAATCGAATTTACCACAGAAAGCCCCAACCATTTTGAATCT
ACCAAAACCAACACCTAAATCGAATTTACCACAGGAAGCCCCAACCATTT
TGAATCTACCAAAACCAACACCTAAATCGAATTTACCACAGAAAGCCCCA
ACCATTTTGAATCTACCAAAACCAACACCTAAATCGAATTTACCACAGGA
AGCCCCAACCATTTTGAATCTACCAAAACCAACACCTAAATCGAATTTAC
CACAGAAAGCCCCAACCATTTTGAATCTACCAAAACCAACACCTAAATCG
AATTTACCACAGGAAGCCCCAACCATTTTGAATCTACCAAAACCAACACC
TAAATCGAATTTACCACAGAAAGCCCCAACCATTTTGAATCTACCAAAAC
CAACACCTAAATCGAATTTACCacagaatacaatccataaagCTTCAGCT
TTCAAAATCAAACCGAAAACAGACACTGTTCACACGCTTTTCAATGTTTC
GCTTGAAAATCATAATGCAAACAACTTGCCTTTAATACCAGAAACACTGA
TCGACGACAACGACAACGATGACGAAAGAAGACAGATCCTAGAAAAACTC
GGTTTATGTAATTTCACATGCCATGATATGGAAGCATTCGTGAAAAGGAA
CAACCTCTCTGTAGGTTGTCTGGAGGTGGAGCCGGATATAATCCGTATGG
AAATGATtctggcaaaatttccgggtCTGTTTACCGAACGGCCAATTTCG
CCTTTTGCCGTAAGACCTAATGTCACTGCTCAACGGATACGATCCTTGTG
GGATAAAGCCGAAGAGTTGCCCGAGGTTTACTCCAACTTCCAAGAGCAGA
ACCAAGTGGATATCGACGACTTGGATCAAATGCTAATATACGAGGTTAGC
AGCAAAGAGGATTTTTTGCTTTTCACTGCCATCATGAGGACATATAATTT
GACTCTAAGAGTGCAAATGGACAATGAGGTGACACCGGtggattttgaaa
acgaatGAgatgaattaTCAAAGATATTTTCTAACCTCGAACCAACGTAT
CATATCTACAAGCTTGACAAAAGATCAGGTTATAAGTCTTGGCCAATCAA
GCAAACTGCTGAGTTAAGGTCTACAACtggaaaatcaaaatgttaCCAAG
GTGTTTTGGTAATTTCTAGTAACCCAAATCTAGCTAAATCGAATTTACCA
CAGGAAGCCCCAACCATTTTGAATCTACCAAAACCAACACCTAAATCGAA
TTTACCACAGGAAGCCCCAACCATTTTGAATCTACCAAAACCAACACCTA
AATCGAATTTACCACAGAAAGCCCCAACCATTTTGAATCTACCAAAACCA
ACACCTAAATCGAATTTACCACAGGAAGCCCCAACCATTTTGAATCTACC
AAAACCAACACCTAAATCGAATTTACCACAGAAAGCCCCAACCATTTTGA
ATCTACCAAAACCAACACCTAAATCGAATTTACCACAGGAAGCCCCAACC
ATTTTGAATCTACCAAAACCAACACCTAAATCGAATTTACCACAGAAAGC
CCCAACCATTTTGAATCTACCAAAACCAACACCTAAATCGAATTTACCAC
AGGAAGCCCCAACCATTTTGAATCTACCAAAACCAACACCTAAATCGAAT
TTACCACAGAAAGCCCCAACCATTTTGAATCTACCAAAACCAACACCTAA
ATCGAATTTACCACAGGAAGCCCCAACCATTTTGAATCTACCAAAACCAA
CACCTAAATCGAATTTACCACAGAAAGCCCCAACCATTTTGAATCTACCA
AAACCAACACCTAAATCGAATTTACCacagaatacaatccataaagCTTC
AGCTTTCAAAATCAAACCGAAAACAGACACTGTTCACACGCTTTTCAATG
TTTCGCTTGAAAATCATAATGCAAACAACTTGCCTTTAATACCAGAAACA
CTGATCGACGACAACGACAACGATGACGAAAGAAGACAGATCCTAGAAAA
ACTCGGTTTATGTAATTTCACATGCCATGATATGGAAGCATTCGTGAAAA
GGAACAACCTCTCTGTAGGTTGTCTGGAGGTGGAGCCGGATATAATCCGT
ATGGAAATGATtctggcaaaatttccgggtCTGTTTACCGAACGGCCAAT
TTCGCCTTTTGCCGTAAGACCTAATGTCACTGCTCAACGGATACGATCCT
TGTGGGATAAAGCCGAAGAGTTGCCCGAGGTTTACTCCAACTTCCAAGAG
CAGAACCAAGTGGATATCGACGACTTGGATCAAATGCTAATATACGAGGT
TAGCAGCAAAGAGGATTTTTTGCTTTTCACTGCCATCATGAGGACATATA
ATTTGACTCTAAGAGTGCAAATGGACAATGAGGTGACACCGGtggatttt
gaaaacgaatGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051482-exon-scaffold_202-1491911889:55761..56697 | TCONS_00051482-exon-scaffold_202-1491911889:55761..56697 | Clytia hemisphaerica | exon |
| TCONS_00051482-exon-scaffold_202-1510915933:55761..56697 | TCONS_00051482-exon-scaffold_202-1510915933:55761..56697 | Clytia hemisphaerica | exon |
| TCONS_00051482-exon-scaffold_202-1575043694:55761..56697 | TCONS_00051482-exon-scaffold_202-1575043694:55761..56697 | Clytia hemisphaerica | exon |
| TCONS_00051482-exon-scaffold_202-1491911889:57139..57210 | TCONS_00051482-exon-scaffold_202-1491911889:57139..57210 | Clytia hemisphaerica | exon |
| TCONS_00051482-exon-scaffold_202-1510915933:57139..57210 | TCONS_00051482-exon-scaffold_202-1510915933:57139..57210 | Clytia hemisphaerica | exon |
| TCONS_00051482-exon-scaffold_202-1575043694:57139..57210 | TCONS_00051482-exon-scaffold_202-1575043694:57139..57210 | Clytia hemisphaerica | exon |
| TCONS_00051482-exon-scaffold_202-1491911889:57403..57826 | TCONS_00051482-exon-scaffold_202-1491911889:57403..57826 | Clytia hemisphaerica | exon |
| TCONS_00051482-exon-scaffold_202-1510915933:57403..57826 | TCONS_00051482-exon-scaffold_202-1510915933:57403..57826 | Clytia hemisphaerica | exon |
| TCONS_00051482-exon-scaffold_202-1575043694:57403..57826 | TCONS_00051482-exon-scaffold_202-1575043694:57403..57826 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:55761..57826 + |
Blast
The following BLAST results are available for this feature:
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